RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-021 4.4.0-31-generic #50-Ubuntu SMP Wed Jul 13 00:05:18 UTC 2016 ppc64le Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu2 git-build-recipe_0.3.2 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.2. Syncing the system clock with the buildd NTP service... 6 Aug 17:15:33 ntpdate[1702]: adjust time server 10.211.37.1 offset -0.004402 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-10573703', '/home/buildd/filecache-default/8c9692db9ad0609beb9d2138f14eb797fb0ebd7a'] Unpacking chroot for build PACKAGEBUILD-10573703 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-10573703'] Mounting chroot for build PACKAGEBUILD-10573703 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-10573703', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-10573703 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-10573703', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-10573703 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main ppc64el Packages [1132 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [565 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el Packages [7498 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4486 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main ppc64el Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe ppc64el Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main ppc64el Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe ppc64el Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el Packages [130 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [52.3 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe ppc64el Packages [588 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [242 kB] Fetched 15.2 MB in 6s (2381 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-6 g++-6 gcc-6 libasan3 libcap-ng0 libgcc-6-dev libpng16-16 libprocps6 libstdc++-6-dev The following packages will be upgraded: apt apt-transport-https base-files bash binutils bsdutils bzip2 cpp cpp-5 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcryptsetup4 libcurl3-gnutls libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgdbm3 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn11 libisl15 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 liblzma5 libmount1 libmpfr4 libncurses5 libncursesw5 libp11-kit0 libpcre3 libperl5.22 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.22 pkgbinarymangler policyrcd-script-zg2 procps sed systemd systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 135 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 156 MB of archives. After this operation, 438 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main ppc64el base-files ppc64el 9.6ubuntu2 [56.5 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main ppc64el debianutils ppc64el 4.8 [86.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main ppc64el bash ppc64el 4.3-15ubuntu1 [616 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main ppc64el bsdutils ppc64el 1:2.28-5ubuntu2 [54.4 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main ppc64el tar ppc64el 1.29b-1 [243 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dpkg ppc64el 1.18.9ubuntu2 [2155 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dash ppc64el 0.5.8-2.3ubuntu1 [110 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libc6-dev ppc64el 2.23-1ubuntu1 [2071 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libc-dev-bin ppc64el 2.23-1ubuntu1 [64.9 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el linux-libc-dev ppc64el 4.4.0-34.53 [824 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gcc-6-base ppc64el 6.1.1-11ubuntu12 [16.9 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgcc1 ppc64el 1:6.1.1-11ubuntu12 [27.3 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libc6 ppc64el 2.23-1ubuntu1 [2442 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main ppc64el e2fslibs ppc64el 1.43.1-1 [158 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main ppc64el e2fsprogs ppc64el 1.43.1-1 [479 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main ppc64el findutils ppc64el 4.6.0+git+20160703-2 [289 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main ppc64el grep ppc64el 2.25-6 [145 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main ppc64el hostname ppc64el 3.18 [11.1 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main ppc64el login ppc64el 1:4.2-3.1ubuntu6 [303 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsmartcols1 ppc64el 2.28-5ubuntu2 [59.6 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libaudit-common all 1:2.6.5-1ubuntu1 [4660 B] Get:22 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcap-ng0 ppc64el 0.7.7-3 [11.2 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libaudit1 ppc64el 1:2.6.5-1ubuntu1 [40.0 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libpcre3 ppc64el 2:8.39-1 [222 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libselinux1 ppc64el 2.5-3 [64.8 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsepol1 ppc64el 2.5-1 [201 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsemanage-common all 2.5-1 [6800 B] Get:28 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsemanage1 ppc64el 2.5-1 [73.9 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main ppc64el bzip2 ppc64el 1.0.6-8build1 [35.6 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libbz2-1.0 ppc64el 1.0.6-8build1 [40.4 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main ppc64el passwd ppc64el 1:4.2-3.1ubuntu6 [754 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libuuid1 ppc64el 2.28-5ubuntu2 [15.5 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libblkid1 ppc64el 2.28-5ubuntu2 [98.4 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libfdisk1 ppc64el 2.28-5ubuntu2 [128 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main ppc64el perl-modules-5.22 all 5.22.2-3 [2631 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libperl5.22 ppc64el 5.22.2-3 [3250 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main ppc64el perl ppc64el 5.22.2-3 [238 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main ppc64el perl-base ppc64el 5.22.2-3 [1195 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libdb5.3 ppc64el 5.3.28-12 [631 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgdbm3 ppc64el 1.8.3-14 [16.3 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main ppc64el zlib1g ppc64el 1:1.2.8.dfsg-2ubuntu5 [51.1 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main ppc64el init-system-helpers all 1.42 [37.5 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main ppc64el util-linux ppc64el 2.28-5ubuntu2 [862 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main ppc64el sysvinit-utils ppc64el 2.88dsf-59.8git1 [18.8 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main ppc64el mount ppc64el 2.28-5ubuntu2 [120 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main ppc64el ncurses-bin ppc64el 6.0+20160625-1ubuntu1 [139 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main ppc64el sed ppc64el 4.2.2-7.1 [147 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main ppc64el init ppc64el 1.42 [5158 B] Get:49 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libc-bin ppc64el 2.23-1ubuntu1 [588 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main ppc64el ncurses-base all 6.0+20160625-1ubuntu1 [16.6 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main ppc64el liblzma5 ppc64el 5.1.1alpha+20120614-2.1ubuntu1 [92.2 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libstdc++6 ppc64el 6.1.1-11ubuntu12 [418 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libapt-pkg5.0 ppc64el 1.3~pre3 [782 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main ppc64el ubuntu-keyring all 2016.05.13 [16.5 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main ppc64el apt ppc64el 1.3~pre3 [1061 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main ppc64el debconf all 1.5.59ubuntu1 [136 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgpg-error0 ppc64el 1.24-1 [36.2 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgcrypt20 ppc64el 1.7.2-2 [419 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libapparmor1 ppc64el 2.10.95-4ubuntu3 [32.2 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcap2 ppc64el 1:2.25-1 [14.1 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libudev1 ppc64el 231-1 [58.1 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.130-1ubuntu1 [149 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcryptsetup4 ppc64el 2:1.7.2-0ubuntu1 [73.3 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libidn11 ppc64el 1.33-1 [45.7 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libkmod2 ppc64el 22-1.1ubuntu1 [36.5 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libmount1 ppc64el 2.28-5ubuntu2 [104 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libseccomp2 ppc64el 2.3.1-2ubuntu2 [43.2 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcap2-bin ppc64el 1:2.25-1 [20.9 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsystemd0 ppc64el 231-1 [208 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main ppc64el systemd ppc64el 231-1 [2092 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main ppc64el systemd-sysv ppc64el 231-1 [16.8 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcomerr2 ppc64el 1.43.1-1 [10.1 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libdebconfclient0 ppc64el 0.213ubuntu1 [5964 B] Get:74 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libncurses5 ppc64el 6.0+20160625-1ubuntu1 [97.0 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libtinfo5 ppc64el 6.0+20160625-1ubuntu1 [79.9 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libncursesw5 ppc64el 6.0+20160625-1ubuntu1 [111 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libss2 ppc64el 1.43.1-1 [10.8 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main ppc64el lsb-base all 9.20160110ubuntu5 [13.2 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main ppc64el multiarch-support ppc64el 2.23-1ubuntu1 [6822 B] Get:80 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libusb-0.1-4 ppc64el 2:0.1.12-30 [16.1 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libprocps6 ppc64el 2:3.3.12-1ubuntu2 [30.2 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main ppc64el procps ppc64el 2:3.3.12-1ubuntu2 [226 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main ppc64el tzdata all 2016f-1 [169 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dmsetup ppc64el 2:1.02.130-1ubuntu1 [72.6 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libslang2 ppc64el 2.3.0-2.3ubuntu1 [376 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsqlite3-0 ppc64el 3.13.0-1 [434 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libssl1.0.0 ppc64el 1.0.2g-1ubuntu7 [868 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main ppc64el xz-utils ppc64el 5.1.1alpha+20120614-2.1ubuntu1 [79.0 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgmp10 ppc64el 2:6.1.1+dfsg-1 [225 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libp11-kit0 ppc64el 0.23.2-4 [104 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libtasn1-6 ppc64el 4.8-1 [42.8 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgnutls30 ppc64el 3.4.14-1ubuntu1 [480 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgssapi-krb5-2 ppc64el 1.14.2+dfsg-1ubuntu1 [110 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libkrb5-3 ppc64el 1.14.2+dfsg-1ubuntu1 [270 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libkrb5support0 ppc64el 1.14.2+dfsg-1ubuntu1 [30.9 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libk5crypto3 ppc64el 1.14.2+dfsg-1ubuntu1 [98.4 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libkeyutils1 ppc64el 1.5.9-9ubuntu1 [9462 B] Get:98 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libroken18-heimdal ppc64el 1.7~git20160703+dfsg-1 [39.3 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libasn1-8-heimdal ppc64el 1.7~git20160703+dfsg-1 [138 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libheimbase1-heimdal ppc64el 1.7~git20160703+dfsg-1 [28.6 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libhcrypto4-heimdal ppc64el 1.7~git20160703+dfsg-1 [96.9 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libwind0-heimdal ppc64el 1.7~git20160703+dfsg-1 [48.0 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libhx509-5-heimdal ppc64el 1.7~git20160703+dfsg-1 [102 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libkrb5-26-heimdal ppc64el 1.7~git20160703+dfsg-1 [190 kB] Get:105 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libheimntlm0-heimdal ppc64el 1.7~git20160703+dfsg-1 [15.6 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libgssapi3-heimdal ppc64el 1.7~git20160703+dfsg-1 [86.9 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsasl2-modules-db ppc64el 2.1.26.dfsg1-15 [14.3 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsasl2-2 ppc64el 2.1.26.dfsg1-15 [47.2 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libldap-2.4-2 ppc64el 2.4.42+dfsg-2ubuntu4 [151 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-1 [51.0 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcurl3-gnutls ppc64el 7.50.1-1ubuntu1 [178 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/main ppc64el apt-transport-https ppc64el 1.3~pre3 [31.8 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libpng16-16 ppc64el 1.6.23-1 [186 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main ppc64el openssl ppc64el 1.0.2g-1ubuntu7 [484 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main ppc64el binutils ppc64el 2.26.1-1ubuntu2 [2322 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libisl15 ppc64el 0.17.1-1 [523 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libmpfr4 ppc64el 3.1.4-2 [185 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety/main ppc64el cpp-6 ppc64el 6.1.1-11ubuntu12 [28.7 MB] Get:119 http://ftpmaster.internal/ubuntu yakkety/main ppc64el cpp ppc64el 4:6.1.1-1ubuntu2 [27.4 kB] Get:120 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgomp1 ppc64el 6.1.1-11ubuntu12 [66.9 kB] Get:121 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libitm1 ppc64el 6.1.1-11ubuntu12 [28.2 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libatomic1 ppc64el 6.1.1-11ubuntu12 [8200 B] Get:123 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libasan2 ppc64el 5.4.1-1ubuntu2 [233 kB] Get:124 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libubsan0 ppc64el 6.1.1-11ubuntu12 [104 kB] Get:125 http://ftpmaster.internal/ubuntu yakkety/main ppc64el g++-5 ppc64el 5.4.1-1ubuntu2 [8603 kB] Get:126 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gcc-5 ppc64el 5.4.1-1ubuntu2 [8586 kB] Get:127 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libstdc++-5-dev ppc64el 5.4.1-1ubuntu2 [1419 kB] Get:128 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgcc-5-dev ppc64el 5.4.1-1ubuntu2 [592 kB] Get:129 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcc1-0 ppc64el 6.1.1-11ubuntu12 [30.6 kB] Get:130 http://ftpmaster.internal/ubuntu yakkety/main ppc64el cpp-5 ppc64el 5.4.1-1ubuntu2 [7893 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gcc-5-base ppc64el 5.4.1-1ubuntu2 [17.2 kB] Get:132 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dpkg-dev all 1.18.9ubuntu2 [641 kB] Get:133 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libdpkg-perl all 1.18.9ubuntu2 [203 kB] Get:134 http://ftpmaster.internal/ubuntu yakkety/main ppc64el make ppc64el 4.1-9 [153 kB] Get:135 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libasan3 ppc64el 6.1.1-11ubuntu12 [272 kB] Get:136 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libgcc-6-dev ppc64el 6.1.1-11ubuntu12 [661 kB] Get:137 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gcc-6 ppc64el 6.1.1-11ubuntu12 [28.3 MB] Get:138 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gcc ppc64el 4:6.1.1-1ubuntu2 [5184 B] Get:139 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libstdc++-6-dev ppc64el 6.1.1-11ubuntu12 [1447 kB] Get:140 http://ftpmaster.internal/ubuntu yakkety/main ppc64el g++-6 ppc64el 6.1.1-11ubuntu12 [30.8 MB] Get:141 http://ftpmaster.internal/ubuntu yakkety/main ppc64el g++ ppc64el 4:6.1.1-1ubuntu2 [1468 B] Get:142 http://ftpmaster.internal/ubuntu yakkety/main ppc64el optipng ppc64el 0.7.6-1build1 [84.4 kB] Get:143 http://ftpmaster.internal/ubuntu yakkety/main ppc64el pkgbinarymangler all 130 [43.2 kB] Get:144 http://ftpmaster.internal/ubuntu yakkety/main ppc64el policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 156 MB in 12s (12.8 MB/s) (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12024 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.1ubuntu6_ppc64el.deb ... Unpacking passwd (1:4.2-3.1ubuntu6) over (1:4.2-3.1ubuntu5) ... Setting up passwd (1:4.2-3.1ubuntu6) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12024 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.28-5ubuntu2_ppc64el.deb ... Unpacking libfdisk1:ppc64el (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libfdisk1:ppc64el (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... 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Unpacking perl-base (5.22.2-3) over (5.22.1-9) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up perl-base (5.22.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12025 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-12_ppc64el.deb ... Unpacking libdb5.3:ppc64el (5.3.28-12) over (5.3.28-11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libdb5.3:ppc64el (5.3.28-12) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12025 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-14_ppc64el.deb ... Unpacking libgdbm3:ppc64el (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu5_ppc64el.deb ... Unpacking zlib1g:ppc64el (1:1.2.8.dfsg-2ubuntu5) over (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up zlib1g:ppc64el (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12025 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.42_all.deb ... Unpacking init-system-helpers (1.42) over (1.29ubuntu1) ... Setting up init-system-helpers (1.42) ... (Reading database ... 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Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../mount_2.28-5ubuntu2_ppc64el.deb ... Unpacking mount (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up mount (2.28-5ubuntu2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.1.1-11ubuntu12_ppc64el.deb ... Unpacking libstdc++6:ppc64el (6.1.1-11ubuntu12) over (5.3.1-14ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libstdc++6:ppc64el (6.1.1-11ubuntu12) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.3~pre3_ppc64el.deb ... Unpacking libapt-pkg5.0:ppc64el (1.3~pre3) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libapt-pkg5.0:ppc64el (1.3~pre3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... 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Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../apt_1.3~pre3_ppc64el.deb ... Unpacking apt (1.3~pre3) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up apt (1.3~pre3) ... Installing new version of config file /etc/cron.daily/apt-compat ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12031 files and directories currently installed.) Preparing to unpack .../debconf_1.5.59ubuntu1_all.deb ... Unpacking debconf (1.5.59ubuntu1) over (1.5.58ubuntu1) ... Setting up debconf (1.5.59ubuntu1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12031 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.2-2_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.7.2-2) over (1.6.5-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libgcrypt20:ppc64el (1.7.2-2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12031 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.10.95-4ubuntu3_ppc64el.deb ... Unpacking libapparmor1:ppc64el (2.10.95-4ubuntu3) over (2.10.95-0ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libapparmor1:ppc64el (2.10.95-4ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1_ppc64el.deb ... Unpacking libcap2:ppc64el (1:2.25-1) over (1:2.24-12) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcap2:ppc64el (1:2.25-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../libudev1_231-1_ppc64el.deb ... Unpacking libudev1:ppc64el (231-1) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libudev1:ppc64el (231-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.130-1ubuntu1_ppc64el.deb ... Unpacking libdevmapper1.02.1:ppc64el (2:1.02.130-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.130-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.2-0ubuntu1_ppc64el.deb ... Unpacking libcryptsetup4:ppc64el (2:1.7.2-0ubuntu1) over (2:1.6.6-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcryptsetup4:ppc64el (2:1.7.2-0ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-1_ppc64el.deb ... Unpacking libidn11:ppc64el (1.33-1) over (1.32-3ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libidn11:ppc64el (1.33-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../libkmod2_22-1.1ubuntu1_ppc64el.deb ... Unpacking libkmod2:ppc64el (22-1.1ubuntu1) over (22-1ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libkmod2:ppc64el (22-1.1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../libmount1_2.28-5ubuntu2_ppc64el.deb ... Unpacking libmount1:ppc64el (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libmount1:ppc64el (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12032 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2ubuntu2_ppc64el.deb ... Unpacking libseccomp2:ppc64el (2.3.1-2ubuntu2) over (2.2.3-3ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libseccomp2:ppc64el (2.3.1-2ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... 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Setting up libtinfo5:ppc64el (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12036 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20160625-1ubuntu1_ppc64el.deb ... Unpacking libncursesw5:ppc64el (6.0+20160625-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libncursesw5:ppc64el (6.0+20160625-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12036 files and directories currently installed.) Preparing to unpack .../libss2_1.43.1-1_ppc64el.deb ... Unpacking libss2:ppc64el (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libss2:ppc64el (1.43.1-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12036 files and directories currently installed.) Preparing to unpack .../lsb-base_9.20160110ubuntu5_all.deb ... Unpacking lsb-base (9.20160110ubuntu5) over (9.20160110) ... Setting up lsb-base (9.20160110ubuntu5) ... (Reading database ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-10573703', 'ppc64el', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=ppc64el', '--dist=yakkety-proposed', '--purge=never', '--nolog', 'ncbi-blast+_2.4.0-3.dsc'] Initiating build PACKAGEBUILD-10573703 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-31-generic #50-Ubuntu SMP Wed Jul 13 00:05:18 UTC 2016 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-ppc64el-021.buildd +==============================================================================+ | ncbi-blast+ 2.4.0-3 (ppc64el) 06 Aug 2016 17:16 | +==============================================================================+ Package: ncbi-blast+ Version: 2.4.0-3 Source Version: 2.4.0-3 Distribution: yakkety-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-99cXMX' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-10573703/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-blast+_2.4.0-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-99cXMX/resolver-cSHV7J/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-99cXMX/resolver-cSHV7J/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-99cXMX/resolver-cSHV7J/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-99cXMX/resolver-cSHV7J/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-99cXMX/resolver-cSHV7J/apt_archive ./ Sources [214 B] Get:5 copy:/build/ncbi-blast+-99cXMX/resolver-cSHV7J/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-99cXMX/resolver-cSHV7J/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-99cXMX/resolver-lZWMte/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-99cXMX/resolver-lZWMte/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-99cXMX/resolver-lZWMte/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-99cXMX/resolver-lZWMte/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-99cXMX/resolver-lZWMte/apt_archive ./ Sources [258 B] Get:5 copy:/build/ncbi-blast+-99cXMX/resolver-lZWMte/apt_archive ./ Packages [577 B] Fetched 2954 B in 0s (286 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-blast+ build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost1.61-dev libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libboost1.61-doc libboost-atomic1.61-dev libboost-chrono1.61-dev libboost-context1.61-dev libboost-coroutine1.61-dev libboost-date-time1.61-dev libboost-exception1.61-dev libboost-filesystem1.61-dev libboost-graph1.61-dev libboost-graph-parallel1.61-dev libboost-iostreams1.61-dev libboost-locale1.61-dev libboost-log1.61-dev libboost-math1.61-dev libboost-mpi1.61-dev libboost-mpi-python1.61-dev libboost-program-options1.61-dev libboost-python1.61-dev libboost-random1.61-dev libboost-regex1.61-dev libboost-serialization1.61-dev libboost-signals1.61-dev libboost-system1.61-dev libboost-thread1.61-dev libboost-timer1.61-dev libboost-wave1.61-dev libboost1.61-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost1.61-dev libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 24.7 MB of archives. After this operation, 192 MB of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-99cXMX/resolver-lZWMte/apt_archive ./ sbuild-build-depends-ncbi-blast+-dummy 0.invalid.0 [822 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main ppc64el groff-base ppc64el 1.22.3-8 [1356 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main ppc64el bsdmainutils ppc64el 9.0.6ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libpipeline1 ppc64el 1.4.1-2 [24.1 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main ppc64el man-db ppc64el 2.7.5-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libpcrecpp0v5 ppc64el 2:8.39-1 [16.1 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libunistring0 ppc64el 0.9.3-5.2ubuntu1 [269 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libmagic1 ppc64el 1:5.28-2ubuntu1 [238 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main ppc64el file ppc64el 1:5.28-2ubuntu1 [22.5 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libasprintf0v5 ppc64el 0.19.7-2ubuntu3 [6604 B] Get:11 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gettext-base ppc64el 0.19.7-2ubuntu3 [46.8 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libglib2.0-0 ppc64el 2.49.2-2 [1046 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libicu57 ppc64el 57.1-2 [7769 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-1 [613 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main ppc64el time ppc64el 1.7-25.1 [26.4 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libsigsegv2 ppc64el 2.10-5 [14.2 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main ppc64el m4 ppc64el 1.4.17-5 [198 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el autoconf all 2.69-10 [321 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el autotools-dev all 20160430.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main ppc64el automake all 1:1.15-4ubuntu1 [510 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main ppc64el autopoint all 0.19.7-2ubuntu3 [406 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libcroco3 ppc64el 0.6.11-1 [75.6 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main ppc64el gettext ppc64el 0.19.7-2ubuntu3 [1100 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main ppc64el po-debconf all 1.0.19 [234 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libarchive-zip-perl all 1.58-1 [84.0 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libfile-stripnondeterminism-perl all 0.022-1 [11.7 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dh-strip-nondeterminism all 0.022-1 [4856 B] Get:30 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libtool all 2.4.6-1 [194 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main ppc64el dh-autoreconf all 12 [15.8 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main ppc64el debhelper all 9.20160709ubuntu1 [707 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libboost1.61-dev ppc64el 1.61.0+dfsg-2.1 [6821 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el libboost-test1.61.0 ppc64el 1.61.0+dfsg-2.1 [188 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el libboost-test1.61-dev ppc64el 1.61.0+dfsg-2.1 [246 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/universe ppc64el libboost-test-dev ppc64el 1.61.0.2 [2896 B] Get:37 http://ftpmaster.internal/ubuntu yakkety/main ppc64el libbz2-dev ppc64el 1.0.6-8build1 [40.8 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libpcre16-3 ppc64el 2:8.39-1 [143 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libpcre32-3 ppc64el 2:8.39-1 [133 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety-proposed/main ppc64el libpcre3-dev ppc64el 2:8.39-1 [512 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main ppc64el zlib1g-dev ppc64el 1:1.2.8.dfsg-2ubuntu5 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.7 MB in 0s (39.1 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13020 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-8_ppc64el.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_ppc64el.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../libpipeline1_1.4.1-2_ppc64el.deb ... 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Setting up libpipeline1:ppc64el (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:ppc64el (57.1-2) ... Setting up libboost1.61-dev:ppc64el (1.61.0+dfsg-2.1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-1) ... Setting up libmagic1:ppc64el (1:5.28-2ubuntu1) ... Setting up libcroco3:ppc64el (0.6.11-1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Setting up libasprintf0v5:ppc64el (0.19.7-2ubuntu3) ... Setting up libpcrecpp0v5:ppc64el (2:8.39-1) ... Setting up libpcre32-3:ppc64el (2:8.39-1) ... Setting up libpcre16-3:ppc64el (2:8.39-1) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libboost-test1.61.0:ppc64el (1.61.0+dfsg-2.1) ... Setting up autopoint (0.19.7-2ubuntu3) ... Setting up zlib1g-dev:ppc64el (1:1.2.8.dfsg-2ubuntu5) ... Setting up libfile-stripnondeterminism-perl (0.022-1) ... Setting up libpcre3-dev:ppc64el (2:8.39-1) ... Setting up libboost-test1.61-dev:ppc64el (1.61.0+dfsg-2.1) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.28-2ubuntu1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-test-dev:ppc64el (1.61.0.2) ... Setting up libtool (2.4.6-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160709ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.022-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-31-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.26.1-1ubuntu2 dpkg-dev_1.18.9ubuntu2 g++-5_5.4.1-1ubuntu2 g++-6_6.1.1-11ubuntu12 gcc-5_5.4.1-1ubuntu2 gcc-6_6.1.1-11ubuntu12 libc6-dev_2.23-1ubuntu1 libstdc++-5-dev_5.4.1-1ubuntu2 libstdc++-6-dev_6.1.1-11ubuntu12 libstdc++6_6.1.1-11ubuntu12 linux-libc-dev_4.4.0-34.53 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~pre3 apt-transport-https_1.3~pre3 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu2 base-passwd_3.5.39 bash_4.3-15ubuntu1 binutils_2.26.1-1ubuntu2 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28-5ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-5_5.4.1-1ubuntu2 cpp-6_6.1.1-11ubuntu12 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_9.20160709ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.022-1 diffutils_1:3.3-3 dmsetup_2:1.02.130-1ubuntu1 dpkg_1.18.9ubuntu2 dpkg-dev_1.18.9ubuntu2 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.20.2-1ubuntu1 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-5_5.4.1-1ubuntu2 g++-6_6.1.1-11ubuntu12 gcc_4:6.1.1-1ubuntu2 gcc-5_5.4.1-1ubuntu2 gcc-5-base_5.4.1-1ubuntu2 gcc-6_6.1.1-11ubuntu12 gcc-6-base_6.1.1-11ubuntu12 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 init_1.42 init-system-helpers_1.42 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu3 libapt-pkg5.0_1.3~pre3 libarchive-zip-perl_1.58-1 libasan2_5.4.1-1ubuntu2 libasan3_6.1.1-11ubuntu12 libasn1-8-heimdal_1.7~git20160703+dfsg-1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-11ubuntu12 libattr1_1:2.4.47-2 libaudit-common_1:2.6.5-1ubuntu1 libaudit1_1:2.6.5-1ubuntu1 libblkid1_2.28-5ubuntu2 libboost-test-dev_1.61.0.2 libboost-test1.61-dev_1.61.0+dfsg-2.1 libboost-test1.61.0_1.61.0+dfsg-2.1 libboost1.61-dev_1.61.0+dfsg-2.1 libbz2-1.0_1.0.6-8build1 libbz2-dev_1.0.6-8build1 libc-bin_2.23-1ubuntu1 libc-dev-bin_2.23-1ubuntu1 libc6_2.23-1ubuntu1 libc6-dev_2.23-1ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-11ubuntu12 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.130-1ubuntu1 libdpkg-perl_1.18.9ubuntu2 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.28-5ubuntu2 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.022-1 libgcc-5-dev_5.4.1-1ubuntu2 libgcc-6-dev_6.1.1-11ubuntu12 libgcc1_1:6.1.1-11ubuntu12 libgcrypt20_1.7.2-2 libgdbm3_1.8.3-14 libglib2.0-0_2.49.2-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.4.14-1ubuntu1 libgomp1_6.1.1-11ubuntu12 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.2+dfsg-1ubuntu1 libgssapi3-heimdal_1.7~git20160703+dfsg-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1 libheimbase1-heimdal_1.7~git20160703+dfsg-1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1 libicu57_57.1-2 libidn11_1.33-1 libisl15_0.17.1-1 libitm1_6.1.1-11ubuntu12 libk5crypto3_1.14.2+dfsg-1ubuntu1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1 libkrb5-3_1.14.2+dfsg-1ubuntu1 libkrb5support0_1.14.2+dfsg-1ubuntu1 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2.1ubuntu1 libmagic1_1:5.28-2ubuntu1 libmount1_2.28-5ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-4 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre16-3_2:8.39-1 libpcre3_2:8.39-1 libpcre3-dev_2:8.39-1 libpcre32-3_2:8.39-1 libpcrecpp0v5_2:8.39-1 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libpng16-16_1.6.23-1 libprocps4_2:3.3.10-4ubuntu2 libprocps6_2:3.3.12-1ubuntu2 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28-5ubuntu2 libsqlite3-0_3.13.0-1 libss2_1.43.1-1 libssl1.0.0_1.0.2g-1ubuntu7 libstdc++-5-dev_5.4.1-1ubuntu2 libstdc++-6-dev_6.1.1-11ubuntu12 libstdc++6_6.1.1-11ubuntu12 libsystemd0_231-1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libubsan0_6.1.1-11ubuntu12 libudev1_231-1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5ubuntu2 libwind0-heimdal_1.7~git20160703+dfsg-1 libxml2_2.9.4+dfsg1-1 linux-libc-dev_4.4.0-34.53 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu6 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28-5ubuntu2 multiarch-support_2.23-1ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu7 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu6 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pkg-create-dbgsym_0.72 pkgbinarymangler_130 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_231-1 systemd-sysv_231-1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 time_1.7-25.1 tzdata_2016f-1 ubuntu-keyring_2016.05.13 util-linux_2.28-5ubuntu2 xz-utils_5.1.1alpha+20120614-2.1ubuntu1 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Aug 6 00:54:58 2016 UTC using RSA key ID F14A64A2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.4.0-3.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.4.0 dpkg-source: info: unpacking ncbi-blast+_2.4.0.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.4.0-3.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying fix_version_extraction dpkg-source: info: applying support_recent_boost dpkg-source: info: applying support_x32 Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0 SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.4.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ncbi-blast+-2.4.0 dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:94: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' debian/rules build-arch dh build-arch -Dc++ --with autotools_dev dh_testdir -a -O-Dc\+\+ dh_update_autotools_config -a -O-Dc\+\+ dh_autotools-dev_updateconfig -a -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-symbols CFLAGS_FOR_BUILD="-g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... 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Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether char is unsigned... yes checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 8 checking for long double... yes checking size of long double... 16 checking for long long... yes checking size of long long... 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 8 checking for wchar_t... yes checking size of wchar_t... 4 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes 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(cached) unnecessary checking whether the C compiler supports C99 restrict... __restrict__ checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for marking functions that never return... __attribute__((__noreturn__)) checking syntax for marking functions whose result should be checked... __attribute__((warn_unused_result)) checking syntax for declaring thread-local variables... __thread checking syntax for marking types as packed to save memory... __attribute__((__packed__)) checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -msse4.1... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -maes... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always... yes checking whether in-house NCBI resources are available... no checking for gethostbyname in -lnsl... yes checking for connect in -lsocket... no checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for socketpair... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... -lcrypt checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for nanosleep... yes checking for pthread_condattr_setclock... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libgmp... no checking for libgcrypt-config... no checking for libgcrypt... no checking for libhogweed... no checking for libgnutls-config... no checking for libgnutls... no checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.5... no checking for python2.6... no checking for python2.7... no checking for python3... no checking for perl... /usr/bin/perl checking for usable Perl libraries... no checking Boost version... 1_61 configure: WARNING: Untested Boost version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-boost. checking for Boost library name tag... -gcc61-mt-1_61-64 (autodetected) checking for Boost.Regex... no checking for Boost.Spirit... yes checking for Boost.System... no checking for Boost.Filesystem... no checking for Boost.Iostreams... no checking for Boost.Program-Options... no checking for Boost.Test... included-only checking for Boost.Thread... no checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for wx-config... no /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/configure: 1: ./configure.lineno: : Permission denied checking for wxWidgets... no checking for FastCGI libraries... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories... no checking for ORBacus... no checking for ICU... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for libexslt... no checking for Xerces-C++... no checking for Xalan-C++... no checking for Zorba... no checking for libsqlite3... no checking for ncbi-vdb... no checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking for libjpeg... no checking for libpng... no checking for libtiff... no checking for libungif... no checking for libgif... no checking for libXpm... no checking for freetype-config... no checking for libftgl... no checking for libmagic... no checking for libmimetic... no checking for soapcpp2... no checking for wsdl2h... no checking for libgsoapssl++... no checking for libavrocpp... no checking for USC Cereal... no checking for libsasl2... no checking for libmongoclient... no checking for libgmock... no configure: looking for configurables below /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++... configure: ...done configure: updating cache config.cache configure: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/config.status config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/bitset/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/cgi/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib/Makefile config.status: creating 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/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/html/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool/Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/./Makefile config.status: creating /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib/ncbicfg.c is updated make[2]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' gcc -c -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lm -lpthread -o run_with_lock /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f run_with_lock /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' Platform not defined for Linux ppc64le -- please fix me project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/4.1.2/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib TMPL=corelib -w all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)': /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp:2058:56: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, prompt.data(), prompt.length()); ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp:2087:50: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, thx.data(), thx.length()); ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:817:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbidiag.hpp:1803:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1767:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1830:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1855:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:3168:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:354:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/version.cpp:456:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/version.cpp:456:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc 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-I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/guard.cpp -o guard.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/test_boost.cpp -o test_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/corelib/teamcity_messages.cpp -o teamcity_messages.o /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_boost.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_boost.o teamcity_messages.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_boost.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtest_boost.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libtest_boost.so /bin/ln -f .test_boost.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[2]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[2]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util TMPL=util -w all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp: In static member function 'static void ncbi::CDictionaryUtil::Stem(const string&, std::__cxx11::string*)': /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/random_gen.cpp -o random_gen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/utf8.cpp -o utf8.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/checksum.cpp -o checksum.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/bytesrc.cpp -o bytesrc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/strbuffer.cpp -o strbuffer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/itree.cpp -o itree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/smalldns.cpp -o smalldns.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/strsearch.cpp -o strsearch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/logrotate.cpp -o logrotate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/format_guess.cpp -o format_guess.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/ascii85.cpp -o ascii85.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/md5.cpp -o md5.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/file_obsolete.cpp -o file_obsolete.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/unicode.cpp -o unicode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary.cpp -o dictionary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp -o dictionary_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/sgml_entity.cpp -o sgml_entity.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/static_set.cpp -o static_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/transmissionrw.cpp -o transmissionrw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT 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-I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/line_reader.cpp -o line_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/util_exception.cpp -o util_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/uttp.cpp -o uttp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 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-I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/file_manifest.cpp -o file_manifest.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxutil.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxutil.so /bin/ln -f .xutil.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xutil.dep make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[2]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[2]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[2]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[2]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. /usr/bin/make -f 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-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxregexp.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxregexp.so /bin/ln -f .xregexp.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/xregexp TMPL=xregexp_template_tester -w all make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp_template_tester.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp_template_tester.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxregexp -lxncbi -lpcre /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxregexp_template_tester.so /bin/ln -f .xregexp_template_tester.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xregexp_template_tester.dep make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[2]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[2]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG 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-I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -ldl -lm -lpthread -o project_tree_builder /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f project_tree_builder /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GMP GCRYPT NETTLE GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB GMOCK PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory Alternatively, cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build' /usr/bin/make -w -j --jobserver-fds=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/html' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=connect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect TMPL=connect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_connect to make__connect_common per /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/.#lock-map. /usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c: In function ‘CORE_SetLOGFILE_NAME_Ex’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c:147:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:77: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_DoLog’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:494:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(112, level, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:534:13: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(109, level, data, size, ^~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:567:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(113, level, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:575:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_InitAPI_’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:852:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Secure socket layer (SSL) has not" ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostname’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:164:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:997:13: note: in expansion of macro ‘CORE_LOG_ERRNO_EXX’ CORE_LOG_ERRNO_EXX(103, eLOG_Error, ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1006:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(104, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname_’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1139:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_getlocalhostaddress’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1179:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1205:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(155, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr_’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1336:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1370:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘x_TryLowerSockFileno’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1479:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(111, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Select_’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1604:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1733:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Poll_’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1877:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2022:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_IsConnected_’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2596:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2606:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2641:25: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Recv’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2797:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Read_’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2977:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Send’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3331:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_WritePending’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3480:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(12, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Shutdown’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3652:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3689:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3753:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Close_’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3817:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3833:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3863:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3922:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Connect_’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4022:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(131, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4039:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(142, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4058:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4084:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(23, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4128:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(24, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4143:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4154:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4174:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(129, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4215:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(25, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4259:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(26, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Create’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4351:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateOnTop’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4404:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(47, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c: In function ‘ConnNetInfo_Log’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:114:54: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1297:9: note: in expansion of macro ‘LOG_WRITE’ LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4427:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(148, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4465:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(48, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_ConnectEx’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1515:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1528:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4506:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(50, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1556:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1567:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4520:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1613:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1626:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1665:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_Connect’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1698:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(9, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1738:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4583:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(132, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4605:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4616:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4636:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4651:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateListening’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4703:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(144, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4737:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(34, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4783:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(35, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4838:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4859:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(150, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4910:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(38, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4929:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(37, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4980:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(110, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4994:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(115, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Accept’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5041:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(39, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5097:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(40, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5156:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(41, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5215:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5226:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5237:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5257:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_CloseListening’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5302:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(44, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5331:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(45, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_RecvMsg’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5419:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5467:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_SendMsg’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5502:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5518:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(88, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5527:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(89, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5577:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(90, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5623:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Create’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5666:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5676:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5688:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5698:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5717:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(116, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Close’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5779:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(117, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘LSOCK_GetOSHandleEx’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5990:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(46, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Reconnect’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6178:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(52, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6188:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(53, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6200:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(51, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Shutdown’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6230:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(54, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6237:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(55, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6245:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Wait’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6374:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(56, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6402:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(57, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6416:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(58, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6430:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(59, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6439:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(60, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6449:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(61, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6459:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(62, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetTimeout’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6552:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(63, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetTimeout’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6593:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(64, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Read’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6635:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(65, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6645:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(66, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_ReadLine’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6676:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(125, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Pushback’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6752:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(67, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Write’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6804:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(68, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6831:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(69, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6841:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(70, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Abort’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6860:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(71, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6867:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(72, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetOSHandleEx’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7018:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(73, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetCork’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7081:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(158, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7088:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(159, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7101:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_DisableOSSendDelay’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7118:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(156, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7125:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(157, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7138:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_CreateEx’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7179:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(76, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7218:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(77, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7268:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(130, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Bind’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7298:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(79, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7305:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(78, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7323:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7339:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(114, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Connect’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7368:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(82, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7375:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(81, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7394:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(83, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7407:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(84, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7436:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(85, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WaitMsg’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7464:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(96, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7471:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(95, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_RecvMsg’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7510:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(93, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7517:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(92, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SendMsg’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7554:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(87, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7561:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(86, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WipeMsg’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7593:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(98, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7600:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(97, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7620:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(99, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SetBroadcast’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7638:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(101, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7645:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(100, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7665:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(102, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetReuseAddress’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7827:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetupSSL’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:8218:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Cannot reset SSL while it is in use"); ^~~~~~~~ cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘x_ReInit’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:272:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:301:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, Close, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:305:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, ReInit, eLOG_Error, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘s_Open’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:381:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_CreateEx’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:423:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(2, Create, eLOG_Error, "NULL connector"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReInit’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:444:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:444:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetType’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:452:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:452:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Description’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:461:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:461:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetPosition’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:473:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:473:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:486:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetTimeout’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:502:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:502:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:542:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetTimeout’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:557:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:557:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:565:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(11, GetTimeout, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:580:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Wait’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:596:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:596:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:640:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Write’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:661:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:701:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(17, Write, level, "Unable to write data"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Write’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:743:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:743:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Pushback’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:778:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:778:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Flush’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:798:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:798:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:812:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(21, Flush, eLOG_Warning, "Failed to flush"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Read’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:837:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:876:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(32, Read, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:902:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(23, Read, level, "Unable to read data"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Read’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:953:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:953:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReadLine’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1002:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1002:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1050:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(35, ReadLine, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Status’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1069:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1069:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Close’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1108:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1108:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetCallback’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1128:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1128:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1134:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetSOCK’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1155:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1155:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Remove’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:42:3: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:64:13: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(34, eLOG_Error, ^~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Add’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:42:3: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(33, eLOG_Error, ^~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c:171:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(163, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Adjust’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:367:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:382:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:408:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:423:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:433:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:457:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Connect’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:560:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:700:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(20, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ConnectAndSend’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:911:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘x_ReadChunkHead’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1042:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadData’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1113:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(24, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1137:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(25, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadHeader’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1211:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(7, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1248:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, level, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1310:9: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1327:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1346:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1394:25: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1553:21: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1569:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(11, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1627:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1632:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1643:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1651:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(14, eLOG_Note, s, n, ^~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1660:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Read’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1831:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Warning, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:115: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Create’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:243:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:264:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_AttachFast’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:288:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:297:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Attach’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:326:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(34, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Find’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:422:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Alloc’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:630:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:636:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:683:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Free’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:805:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:811:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:824:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:832:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:844:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(14, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_FreeFast’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:856:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:862:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:887:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:894:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Trim’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:916:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(30, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:951:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(31, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:978:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(32, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Walk’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1000:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(28, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1014:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(26, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1017:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(27, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1029:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1116:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1131:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1149:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1160:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(24, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Walk’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1176:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Destroy’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1278:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(33, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c: In function ‘x_ServiceName’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:84:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:93:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c: In function ‘x_Open’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:319:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c: In function ‘s_Resolve’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c:198:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_OpenDispatcher’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:94:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_ParseHeader’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:169:49: warning: format ‘%n’ expects argument of type ‘int *’, but argument 7 has type ‘unsigned int *’ [-Wformat=] if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:170:51: warning: format ‘%n’ expects argument of type ‘int *’, but argument 5 has type ‘unsigned int *’ [-Wformat=] || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_Open’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:817:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:843:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:1033:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c: In function ‘s_SendRcpt’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:389:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(3, "Recipient address is too long"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:392:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:400:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(4, write_error); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:403:13: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(5, proto_error, buf); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c: In function ‘CORE_SendMailEx’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:455:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(6, "Invalid magic cookie"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:460:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(7, "At least one message recipient must be specified"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:470:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:477:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:482:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(10, "Unable to get local host name"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:487:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(11, "Write error in HELO command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:495:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(13, "Write error in MAIL command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:498:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:519:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(15, "Write error in DATA command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:552:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(32, "Write error in sending Date"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:559:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(33, "Write error in sending From"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:567:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(17, "Write error in sending Subject"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:574:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(18, "Write error in sending To"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:581:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(19, "Write error in sending Cc"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:585:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:596:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(20, "Write error in sending mailer information"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:623:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(21, "Write error while sending custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:626:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(22, "Header write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:628:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(23, "Write error while finalizing custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:636:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(24, "Write error in message body delimiter"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:662:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(25, "Write error while sending message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:665:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(26, "Body write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:668:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(27, "Write error while finalizing message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:671:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(28, "Write error while finalizing message"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:676:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:679:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(30, "Write error in QUIT command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:681:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); ^~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:50: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPCloseData’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:199:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:204:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:218:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:222:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:236:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPReply’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:283:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPCommandEx’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:359:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPLogin’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:592:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPPassive’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:950:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPXfer’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1110:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPPollCntl’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1633:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1899:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Write’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1974:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_CreateConnector’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:2284:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); ^~~~~~~~ cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringConcat’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:429:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "g_LBOS_StringConcat: No RAM. Returning NULL."); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringNConcat’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:517:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_RegGet’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:542:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "g_LBOS_RegGet: No RAM. Returning NULL."); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:555:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "g_LBOS_RegGet: Buffer " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_ComposeLBOSAddress’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:588:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ComposeLBOSAddress: " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_GetLBOSAddressEx’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:696:5: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Trace, "Getting LBOS addresses..."); ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:710:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Use of custom LBOS address was " ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:717:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Did not manage to copy custom " ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:725:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS using " ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:735:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS in " ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadRole’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:778:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("s_LBOS_ReadRole: " ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:786:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadRole: " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:811:25: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadDomain’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:866:17: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("s_LBOS_ReadDomain: " ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:874:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadDomain: " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:888:17: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:921:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("LBOS mapper: " ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:929:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadLBOSResolve: " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:943:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:954:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (s_LBOS_Lbosresolver == NULL) ^~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:957:13: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ s_LBOS_Lbosresolver = strdup(str + 7); ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConnectURL’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:993:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Parsing URL \"%s\"", url)); ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:995:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot parse URL"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:998:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Creating HTTP%s connector", ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1005:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1008:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Note, "Creating connection"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1010:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create connection"); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_UrlReadAll’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1068:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1080:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1125:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1139:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ResolveIPPort’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1175:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1235:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_FillCandidates’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1338:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1344:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Ho servers of \"%s\" found by LBOS", ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1349:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1362:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckAnnounceArgs’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1392:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1399:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1414:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, incorrect port."); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1418:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1423:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1428:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckDeannounceArgs’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1442:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1448:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1453:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1458:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_PerformRequest’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1496:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Replace0000WithIP’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1550:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1559:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1566:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConstructData’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1728:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Initialize’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1799:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1801:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1810:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Note, "LBOS is turned ON in config."); ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1812:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1828:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ParseHeader’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1876:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Reset’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1939:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘SERV_LBOS_Open’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2068:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2076:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2091:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2106:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2115:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Announce’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2207:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2240:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2248:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2254:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2264:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2274:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_AnnounceFromRegistry’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2393:53: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=] if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Deannounce’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2445:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_DeannounceAll’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2580:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "RAM error. Cancelling deannounce all."); ^~~~~~~~~~ cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: ‘s_CompoHeapIsValid’ defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_heap.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/composition_adjustment.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c:31:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c:31:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/.#lock-map. Waiting for /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect/make__connect_common.lockmake[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtables.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libtables.so /bin/ln -f .tables.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c:86:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /bin/rm -f libconnect.so .libconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lnsl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libconnect.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libconnect.so /bin/ln -f .connect.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.connect.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:205:1: warning: ‘s_DistinctAlignmentsLength’ defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:190:1: warning: ‘s_AlignmentsAreSorted’ defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/smith_waterman.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libcomposition_adjustment.so /bin/ln -f .composition_adjustment.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp: In member function ‘void ncbi::CGeneInfo::ToString(std::__cxx11::string&, bool, const string&, unsigned int) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:182:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetDescription(), " ", strDescrWords); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libcreaders.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libcreaders.so /bin/ln -f .creaders.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.creaders.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' . Acquired /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect/make__connect_common.lock for PID 23042 (make__connect_common) make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libsequtil.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libsequtil.so /bin/ln -f .sequtil.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html TMPL=html -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp: In static member function ‘static void ncbi::CGeneFileUtils::ReadGeneInfo(ncbi::CNcbiIfstream&, int, ncbi::CRef&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:166:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strBuf, "\t", strItems); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgene_info.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgene_info.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libgene_info.so /bin/ln -f .gene_info.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxhtml.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxhtml.so /bin/ln -f .xhtml.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/html' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/html' cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial TMPL=serial -w -j --jobserver-fds=3,4 all cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/typeinfo.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gene_info_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/.#lock-map. In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objectinfo.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objectiter.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectio.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objectio.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/typeref.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/stdtypes.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -lnsl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxconnect.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxconnect.so /bin/ln -f .xconnect.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/enumerated.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/tar.cpp:52: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp: In function ‘std::__cxx11::string ncbi::s_DumpSparseMap(const SHeader*, const char*, const char*, bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5269:49: warning: ‘off’ may be used uninitialized in this function [-Wmaybe-uninitialized] NStr::UInt8ToString(ret, value, flags, base); ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/tar.cpp:740:23: note: ‘off’ was declared here Uint8 off, gap; ^~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/ptrinfo.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2361:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2361:23: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/autoptrinfo.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/continfo.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/stltypes.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_TwoHit’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:489:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:496:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_OneHit’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:756:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:763:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ At top level: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_diagnostics.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c: In function ‘BLAST_PreliminarySearchEngine’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:1263:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:1389:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:1467:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ At top level: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:57:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_extend.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_filter.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_gapalign.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxcompress.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxcompress.so /bin/ln -f .xcompress.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hits.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_itree.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_kappa.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_lookup.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aalookup.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c: In function ‘BlastChooseProteinScanSubject’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:572:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:575:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:580:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; ^ At top level: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nalookup.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaChooseScanSubject’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:296:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:298:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_SmallNaChooseScanSubject’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1325:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1332:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1339:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1341:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1348:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1350:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1352:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1359:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1365:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1369:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_1Mod4; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1373:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_2Mod4; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1377:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_MBChooseScanSubject’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2583:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2585:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2587:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2589:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2597:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2599:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2601:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2606:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2608:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2610:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2612:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2618:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2621:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2624:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2627:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2638:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘BlastChooseNucleotideScanSubjectAny’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2657:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2660:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2662:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ At top level: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_message.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/classinfob.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_options.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘s_IsSeedMasked’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:489:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastNaWordFinder’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1605:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1606:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1618:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1619:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1626:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1627:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1640:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘MB_IndexedWordFinder’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1706:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1708:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastChooseNaExtend’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1778:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_MBLookup; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1782:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1785:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1787:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1791:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1795:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1801:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtend; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1805:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_NaLookup; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1809:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1812:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1814:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ At top level: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi_priv.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seg.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seqsrc.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_setup.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback.c:52:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_stat.c:52:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/member.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c: In function ‘BlastProgram2Number’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c:309:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("phiblastp", program) == 0) ^~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c:312:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ return 0; ^~~~~~ At top level: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gapinfo.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/greedy_align.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_collector.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_besthit.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_culling.c:43:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c: In function ‘s_FwdCompareHSPs’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c:138:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c:141:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (h1->query.offset < h2->query.offset) ^~ At top level: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_util.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_wrap.c:39:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/matrix_freq_ratios.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_std.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_math.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_encoding.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/pattern.c:58:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/classinfo.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_extend.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_gapalign.c:57:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_lookup.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_parameters.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_posit.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_program.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_query_info.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_tune.c:37:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_sw.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_dynarray.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/split_query.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gencode_singleton.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback_mt_priv.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream_mt_utils.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast.so /bin/ln -f .blast.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/variant.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/choice.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/choiceptr.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/choiceptr.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/aliasinfo.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistr.cpp:46: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostr.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objcopy.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objcopy.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxcgi.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxcgi.so /bin/ln -f .xcgi.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/iterator.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/serial.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/delaybuf.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/pack_string.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/pack_string.cpp:32: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/exception.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objhook.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostrasn.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostrasn.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistrasn.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostrasnb.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostrasnb.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistrasnb.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistrasnb.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostrxml.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostrxml.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistrxml.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistrxml.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostrjson.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostrjson.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistrjson.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistrjson.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/serialobject.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/rpcbase_impl.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/rpcbase.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/member.cpp -o member.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/choice.cpp -o choice.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/choiceptr.cpp -o choiceptr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistr.cpp -o objistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostr.cpp -o objostr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/serial.cpp -o serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/delaybuf.cpp -o delaybuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/pack_string.cpp -o pack_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objhook.cpp -o objhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostrxml.cpp -o objostrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistrxml.cpp -o objistrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objostrjson.cpp -o objostrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/objistrjson.cpp -o objistrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/pathhook.cpp -o pathhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxser.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxser.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxser.so /bin/ln -f .xser.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool TMPL=datatool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/statictype.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/datatool.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/enumtype.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/reftype.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/unitype.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/value.cpp -o value.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/module.cpp -o module.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/generate.cpp -o generate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/filecode.cpp -o filecode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/code.cpp -o code.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/fileutil.cpp -o fileutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time 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-D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -o datatool /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f datatool /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh pub all cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh biblio all make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh general all cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh medline all Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqcode all cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blastdb all /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh genome_collection all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -w -j --jobserver-fds=3,4 all Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode' Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux ppc64le -- please fix me make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh scoremat all cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqset all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh gencoll_client all Waiting for /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/make_asn.lockPlatform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat' Platform not defined for Linux ppc64le -- please fix me make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset' /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqedit all cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqsplit all Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh submit all /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh variation all Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blast all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation' /usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1 && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh id1 all Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast' Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' status=0 ; \ MAKE="/usr/bin/make -w -j --jobserver-fds=3,4"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../$x ; \ (cd $d && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqblock' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqblock' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqres' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqtable' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seq all make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2 && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh id2 all make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1 && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh taxon1 all Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2' /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blastxml all /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq' /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq' Platform not defined for Linux ppc64le -- please fix me /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2 && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blastxml2 all make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2 && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh entrez2 all File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml' /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux ppc64le -- please fix me make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh gbseq all Platform not defined for Linux ppc64le -- please fix me File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' Platform not defined for Linux ppc64le -- please fix me /usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh medlars all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh pubmed all Platform not defined for Linux ppc64le -- please fix me make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh mla all /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux ppc64le -- please fix me make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3 && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh taxon3 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed' Platform not defined for Linux ppc64le -- please fix me /usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux ppc64le -- please fix me make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh valid all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. Platform not defined for Linux ppc64le -- please fix me /usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh valerr all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null /usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general TMPL=general -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr' /usr/bin/make[4] (Makefile.valerr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Date_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:4:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Dbtag.cpp: In member function ‘std::__cxx11::string ncbi::objects::CDbtag::GetUrl(const string&) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Dbtag.cpp:740:69: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( taxname, " ", taxname_parts, NStr::eMergeDelims ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:9:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp: In member function ‘ncbi::CConstRef ncbi::objects::CUser_field::GetFieldRef(const string&, const string&, ncbi::NStr::ECase) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp:231:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:9:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp: In member function ‘ncbi::CRef ncbi::objects::CUser_field::SetFieldRef(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp:347:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:9:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp: In member function ‘bool ncbi::objects::CUser_field::DeleteField(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp:406:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:10:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp: In member function ‘ncbi::CConstRef ncbi::objects::CUser_object::GetFieldRef(const string&, const string&, ncbi::NStr::ECase) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp:85:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:10:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp: In member function ‘ncbi::CRef ncbi::objects::CUser_object::SetFieldRef(const string&, const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp:161:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqcode.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqcode.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqcode.so /bin/ln -f .seqcode.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset' . Acquired /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/make_asn.lock for PID 25016 (make_asn) Platform not defined for Linux ppc64le -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/uoconv.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/uoconv.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1' make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' status=0 ; \ MAKE="/usr/bin/make -w -j --jobserver-fds=3,4"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../$x ; \ (cd $d && /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqblock' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqblock' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqres' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqtable' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2' File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastxml2/BlastOutput2_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastxml2/BlastOutput2.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/BlastOutput2.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastxml.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastxml.so /bin/ln -f .blastxml.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgeneral.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libgeneral.so /bin/ln -f .general.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/gbseq/GBAltSeqData_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/gbseq/GBAltSeqData.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq/GBAltSeqData.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.so .libblastxml2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastxml2.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastxml2.so /bin/ln -f .blastxml2.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:5:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/Auth_list.cpp: In member function ‘void ncbi::objects::CAuth_list::ConvertMlToStandard()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/Auth_list.cpp:226:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*it, " ", tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:5:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/Auth_list.cpp:242:49: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(init, "", letters); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:2:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp: In member function ‘ncbi::objects::CComment_rule::TErrorList ncbi::objects::CComment_rule::IsValid(const ncbi::objects::CUser_object&) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp:290:28: warning: unused variable ‘sev’ [-Wunused-variable] CField_rule::TSeverity sev; ^~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:3:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_set.cpp: In static member function ‘static std::__cxx11::list > ncbi::objects::CComment_set::GetKeywords(const ncbi::objects::CUser_object&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_set.cpp:181:48: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(kywd, ";", keywords); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/static_set.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libentrez2.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libentrez2.so /bin/ln -f .entrez2.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/valid___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.so .libgbseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgbseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbseq__.o gbseq___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgbseq.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libgbseq.so /bin/ln -f .gbseq.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/citation_base.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.so .libvalid.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalid.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valid__.o valid___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libvalid.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libvalid.so /bin/ln -f .valid.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.valid.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2cli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lentrez2 -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libentrez2cli.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libentrez2cli.so /bin/ln -f .entrez2cli.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libbiblio.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lgeneral -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libbiblio.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libbiblio.so /bin/ln -f .biblio.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/medlars/Medlars_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/medlars/Medlars_entry.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars/Medlars_entry.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/medline/DocRef_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/medline/DocRef.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/DocRef.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/DocRef_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.so .libmedlars.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedlars.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medlars__.o medlars___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmedlars.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libmedlars.so /bin/ln -f .medlars.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.medlars.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedline.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmedline.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libmedline.so /bin/ln -f .medline.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/pubmed/Pubmed_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/pubmed/Pubmed_entry.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed/Pubmed_entry.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/pub/Pub_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/pub/Pub.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/Pub.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/Pub_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.so .libpubmed.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpubmed.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pubmed__.o pubmed___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libpubmed.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libpubmed.so /bin/ln -f .pubmed.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.pubmed.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpub.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libpub.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libpub.so /bin/ln -f .pub.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/mla/Error_val_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/mla/Error_val.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/Error_val.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/mla__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp:15:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/Linkage_evidence.cpp: In static member function ‘static bool ncbi::objects::CLinkage_evidence::GetLinkageEvidence(ncbi::objects::CLinkage_evidence::TLinkage_evidence&, const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/Linkage_evidence.cpp:64:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( linkage_evidence, ";", linkage_evidence_vec ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: ‘void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: ‘void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/Error_val_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/mla___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BioSource.cpp: In function ‘void ncbi::objects::s_GetWordListFromText(std::__cxx11::string&, ncbi::objects::TWordList&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BioSource.cpp:1335:59: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, " ", word_list, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp: In static member function ‘static const TLegalRepeatTypeSet& ncbi::objects::CGb_qual::GetSetOfLegalRepeatTypes()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] }; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp: In static member function ‘static bool ncbi::objects::CGb_qual::IsValidRptTypeValue(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:213:39: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(val, ",", rpt_types); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp: In static member function ‘static const TLegalPseudogeneSet& ncbi::objects::CGb_qual::GetSetOfLegalPseudogenes()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] }; ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In function ‘void ncbi::objects::s_ProcessInstitutionCollectionCodeLine(const ncbi::CTempString&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp:206:38: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::COrgMod::FixStrain(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp:659:38: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strain, ";", words); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:26:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp: In member function ‘void ncbi::objects::COrgName::x_ResetAttribFlag(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp:133:40: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split( attr, s_flagDelim, lVals ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:26:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp: In member function ‘bool ncbi::objects::COrgName::x_GetAttribFlag(const string&) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp:154:40: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split( attr, s_flagDelim, lVals ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function ‘static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function ‘ncbi::CTempString ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:47:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp: In member function ‘void ncbi::objects::CSeq_feat::RemoveExceptText(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp:355:60: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split(GetExcept_text(), ",", list_of_except_texts); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:47:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp: In member function ‘ncbi::AutoPtr > > > ncbi::objects::CSeq_feat::GetTempExceptionTextSet() const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp:418:27: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)’ is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2686:28: note: declared here vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static bool ncbi::objects::CSubSource::IsCollectionDateAfterTime(const string&, time_t, bool&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:351:48: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(collection_date, "/", pieces); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static void ncbi::objects::CSubSource::IsCorrectDateFormat(const string&, bool&, bool&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:404:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(date_string, "/", pieces); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:453:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(date_string, "/", pieces); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:457:14: warning: unused variable ‘first_bad’ [-Wunused-variable] bool first_bad = false; ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:458:14: warning: unused variable ‘first_future’ [-Wunused-variable] bool first_future = false; ^~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:459:14: warning: unused variable ‘second_bad’ [-Wunused-variable] bool second_bad = false; ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:460:14: warning: unused variable ‘second_future’ [-Wunused-variable] bool second_future = false; ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::GetCollectionDateProblem(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:509:10: warning: unused variable ‘bad_format’ [-Wunused-variable] bool bad_format = false; ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:510:10: warning: unused variable ‘in_future’ [-Wunused-variable] bool in_future = false; ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::vector > ncbi::objects::CSubSource::x_GetDateTokens(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:739:12: warning: unused variable ‘i’ [-Wunused-variable] size_t i; ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static void ncbi::objects::CSubSource::IsCorrectLatLonFormat(std::__cxx11::string, bool&, bool&, bool&, bool&, double&, double&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:1153:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(lat_lon, " ", pieces); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.so .libmla.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmla.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla__.o mla___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmla.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libmla.so /bin/ln -f .mla.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.mla.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::ValidateLatLonCountry(const string&, std::__cxx11::string&, bool, ncbi::objects::CSubSource::ELatLonCountryErr&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:1985:67: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(lat_lon, ",", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static bool ncbi::objects::CSubSource::IsValidSexQualifierValue(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:2336:35: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str," ,/",words); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::FixSexQualifierValue(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:2374:35: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str," ,/",words); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function ‘void ncbi::objects::s_ProcessCellLineLine(const ncbi::CTempString&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:2560:38: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CCountries::CapitalizeFirstLetterOfEveryWord(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3391:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(phrase," \t\r\n",words); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::vector > ncbi::objects::CCountries::x_Tokenize(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3523:37: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(val,",:()",tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function ‘bool ncbi::objects::s_ContainsWholeWord(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3554:74: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(test, word, 0, NPOS, NStr::eFirst, case_sense); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3560:77: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(test, word, pos + 1, NPOS, NStr::eFirst, case_sense); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In member function ‘void ncbi::objects::CLatLonCountryMap::x_InitFromDefaultList(const char* const*, int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:4637:47: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:10:0, from seqloc__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Seq_id.cpp: In static member function ‘static ncbi::SIZE_TYPE ncbi::objects::CSeq_id::ParseIDs(ncbi::objects::CBioseq_Base::TId&, const ncbi::CTempString&, ncbi::objects::CSeq_id::TParseFlags)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Seq_id.cpp:1859:60: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split(ss, "|", fasta_pieces, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/mla/mla_client_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/mla/mla_client.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client_.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.so .libmlacli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmlacli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla_client.o mla_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lmla -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmlacli.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libmlacli.so /bin/ln -f .mlacli.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqtable/BVector_data_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqtable/BVector_data.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/Align_def_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_data_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_data.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seqport_util.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seqport_util.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_tree.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_tree.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_handle.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_mapper.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_loc_mapper_base.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seqlocinfo.cpp:32: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp:1488:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ~~~~~~^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/sofa_type.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/sofa_map.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_loc_from_string.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_from_string.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseq.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libseq.so /bin/ln -f .seq.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation/variation__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/Bioseq_set.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation/variation___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastdb.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastdb.so /bin/ln -f .blastdb.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.so .libvariation.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvariation.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC variation__.o variation___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libvariation.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libvariation.so /bin/ln -f .variation.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3 TMPL=taxon3 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/gb_release_file.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/gb_release_file.cpp:32: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqset.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqset.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqset.so /bin/ln -f .seqset.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/taxon3.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgenome_collection.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgenome_collection.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libgenome_collection.so /bin/ln -f .genome_collection.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon3/cached_taxon3.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/cached_taxon3.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/cache.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/utils.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/ctreecont.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon3/cached_taxon3.cpp -o cached_taxon3.o /bin/rm -f libtaxon3.so .libtaxon3.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon3.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon3__.o taxon3___.o taxon3.o cached_taxon3.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtaxon3.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libtaxon3.so /bin/ln -f .taxon3.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.taxon3.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=3,4 all cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtaxon1.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libtaxon1.so /bin/ln -f .taxon1.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/submit/Contact_info_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/submit/Contact_info.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit/Contact_info.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit/submit__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit/Contact_info_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit/submit___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libscoremat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libscoremat.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libscoremat.so /bin/ln -f .scoremat.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1/id1__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsubmit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libsubmit.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libsubmit.so /bin/ln -f .submit.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valerr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr TMPL=valerr -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1/id1___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqedit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqedit.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqedit.so /bin/ln -f .seqedit.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/valerr/ValidErrItem.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr/ValidErrItem.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr/ValidErrItem_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqsplit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqsplit.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqsplit.so /bin/ln -f .seqsplit.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/read_util.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libid1.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libid1.so /bin/ln -f .id1.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.so .libvalerr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalerr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valerr__.o valerr___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libvalerr.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libvalerr.so /bin/ln -f .valerr.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.valerr.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/blast__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/format_guess_ex.cpp:45: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp: In function ‘ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:58:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:74:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:123:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", fields); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/blast___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/names.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/names.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2/id2__.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp: In member function ‘int ncbi::CAgpRow::FromString(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:303:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line.substr(0, pcomment), "\t", cols); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:316:55: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line.substr(0, pos), "\t", cols); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:321:43: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] else NStr::Tokenize(line, "\t", cols); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp: In member function ‘int ncbi::CAgpRow::ParseGapCols(bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:646:80: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetLinkageEvidence(), ";", raw_linkage_evidences); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp: In static member function ‘static void ncbi::CAgpErrEx::PrintLine(ncbi::CNcbiOstream&, const string&, int, const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:1218:63: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE posSpace = NStr::Find(line, " ", 0, posComment); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:1220:68: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE posTab = NStr::Find(line, "\t", 0, posComment); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:1224:64: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] posTab = NStr::Find(line, " ", posTab+1, posComment); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2/id2___.cpp:2: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_validate_reader.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/aln_reader.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/aln_reader.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libid2.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libid2.so /bin/ln -f .id2.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxnetblast.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxnetblast.so /bin/ln -f .xnetblast.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/bed_reader.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_table_setters.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_info.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp: In constructor ‘ncbi::objects::CSeqTableSetExt::CSeqTableSetExt(const ncbi::CTempString&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp:184:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(name, ".", subfields); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/objmgr_exception.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_annot_info.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_info.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/cigar.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/cigar.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/table_field.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_aln_builder.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp: In member function ‘virtual bool ncbi::objects::CFastaReader::ParseGapLine(const TStr&, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp:1279:35: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/featuredump.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/getfeature.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/getfeature.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:48, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map_switch.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_switch.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/snp_annot_info.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/snp_annot_info.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual bool ncbi::objects::CGFFReader::x_ParseStructuredComment(const TStr&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:408:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "# \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual ncbi::CRef ncbi::objects::CGFFReader::x_ParseFeatureInterval(const TStr&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:479:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", v, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:482:58: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual void ncbi::objects::CGFFReader::x_ParseV3Attributes(ncbi::objects::CGFFReader::SRecord&, const TStrVec&, ncbi::SIZE_TYPE&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:930:53: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v[i], ";", v2, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:938:45: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(values, ",", vals); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_types_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_loc_cvt.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/microarray_reader.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_selector.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/phrap.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_descr_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/feat_ci.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/feat_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/graph_ci.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/graph_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_object_index.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object_index.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_ci.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/reader_base.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info_object.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp: In function ‘ncbi::CRef ncbi::objects::{anonymous}::GetBestId(const TId&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp:146:29: warning: large integer implicitly truncated to unsigned type [-Woverflow] Uint1 best_weight = UINT_MAX; ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_info.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp: In member function ‘virtual bool ncbi::objects::CRepeatMaskerReader::ParseRecord(const string&, ncbi::objects::SRepeatRegion&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp:893:43: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] if ( NStr::Split( line, " \t", values ).size() < MIN_VALUE_COUNT ) { ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_base_info.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/wiggle_reader.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff3_sofa.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_info.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_reader.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gtf_reader.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_info.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/data_source.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/priority.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp: In static member function ‘static void ncbi::objects::CGff2Record::TokenizeGFF(std::vector&, const ncbi::CTempStringEx&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp:220:68: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(in_line, "\t", columns, NStr::fSplit_MergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2686:28: note: declared here vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/blastclient_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/blastclient.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient_.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp: In member function ‘bool ncbi::objects::CGff2Reader::x_FeatureTrimQualifiers(const ncbi::objects::CGff2Record&, ncbi::CRef)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp:829:38: warning: typedef ‘TAttrs’ locally defined but not used [-Wunused-local-typedefs] typedef CGff2Record::TAttributes TAttrs; ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxnetblastcli.so /bin/ln -f .xnetblastcli.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/prefetch_impl.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_impl.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function ‘Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:257:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] Uint4 end_value = *((int *) & end_bytes); ^ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gvf_reader.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o /bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast_unit_test_util.a /bin/ln -f .blast_unit_test_util.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.blast_unit_test_util.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blast_app_util.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blast_app_util.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o /bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqalign_util.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqalign_util.a /bin/ln -f .seqalign_util.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.seqalign_util.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/prefetch_actions.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_actions.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp: In member function ‘std::vector > ncbi::CBlastServices::GetDatabaseInfoLegacy(const string&, bool, bool*, std::vector >*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:442:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(dbname, " \n\t", dbs); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp: In member function ‘std::vector > ncbi::CBlastServices::GetDatabaseInfo(const string&, bool, bool*, std::vector >*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:487:56: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(local_db_name, " \n\t", all_db_names); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/vcf_reader.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=NETBLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast_services.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast_services.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast_services.so /bin/ln -f .blast_services.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/scope.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast_app_util.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/source_mod_parser.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta_exception.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_exception.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/heap_scope.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_converter.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp: In member function ‘void ncbi::CAgpConverter::LoadChromosomeMap(ncbi::CNcbiIstream&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp:143:44: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(line, " \t", split_line); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp: In member function ‘void ncbi::objects::CUCSCRegionReader::xSmartFieldSplit(std::vector >&, ncbi::CTempString)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp:184:62: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t.-:", fields, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/scope_impl.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/scope_info.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/tse_handle.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjread.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o message_listener.o line_error.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lcreaders -lxutil -lpub -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjread.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjread.so /bin/ln -f .xobjread.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_ci.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_annot_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_table_ci.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_handle.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_handle.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_annot_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_handle.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/align_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/align_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range_map.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/object_manager.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector_ci.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seqdesc_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_split_info.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/tse_split_info.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_chunk_info.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/tse_chunk_info.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_ci.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_type_index.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_type_index.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_loc_mapper.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_mapper.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_collector.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader_factory.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader_factory.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/mapped_feat.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/mapped_feat.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_feat_handle.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqres/Seq_graph_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqres/Seq_graph.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_graph_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_graph_handle.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_align_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_handle.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/tse_assigner.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/edit_commands_impl.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/edit_saver.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/edits_db_saver.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/edits_db_saver.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_finder.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/gc_assembly_parser.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/gc_assembly_parser.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split_parser.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_id_sort.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_id_sort.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG 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-D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjmgr.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjmgr.so /bin/ln -f .xobjmgr.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/weight.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgodustmask.so /bin/ln -f .xalgodustmask.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/sequence.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/segmask/segmask.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/segmask/segmask.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgosegmask.so /bin/ln -f .xalgosegmask.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split TMPL=id2_split -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/split_blob.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:55: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp: In function ‘bool ncbi::objects::feature::sFeatureGetChildrenOfSubtypeFaster(ncbi::objects::CMappedFeat, ncbi::objects::CSeqFeatData::ESubtype, std::vector&, ncbi::objects::feature::CFeatTree&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp:3616:22: warning: unused variable ‘ff’ [-Wunused-variable] const CSeq_feat& ff = mf.GetOriginalFeature(); ^~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp: In function ‘bool ncbi::objects::feature::sFeatureGetChildrenOfSubtype(ncbi::objects::CMappedFeat, ncbi::objects::CSeqFeatData::ESubtype, std::vector&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp:3639:22: warning: unused variable ‘ff’ [-Wunused-variable] const CSeq_feat& ff = mf.GetOriginalFeature(); ^~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/seqref.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘std::__cxx11::string ncbi::s_SeqDB_TryPaths(const string&, const string&, char, bool, ncbi::CSeqDB_FileExistence&, bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:361:79: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blast_paths, s_GetPathSplitter(), roads, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/metareg.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/seqtitle.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/MolInfo_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/MolInfo.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘const string* ncbi::s_CheckUniqueValues(const std::map, std::__cxx11::basic_string >&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2038:37: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v, ":", items); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In member function ‘void ncbi::CSeqDB_IdRemapper::AddMapping(int, int, const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2072:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘void ncbi::s_GetDetails(const string&, std::__cxx11::string&, std::__cxx11::string&, std::__cxx11::string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2248:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetFlags(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:787:45: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( clause, ";", kywds ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In function ‘bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:1051:80: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In function ‘std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:1680:61: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:1758:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/id_range.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In function ‘size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2369:68: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2370:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ~~~~^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2440:83: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2625:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/object_splitinfo.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/obj_sniff.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/obj_sniff.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp: In constructor ‘ncbi::objects::CId2ReaderBase::CId2ReaderBase()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:182:68: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(proc_param, ";", proc_list, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/asn_sizer.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/annot_piece.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/annot_piece.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/place_id.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/chunk_info.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/chunk_info.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_align_util.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/size.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libid2_split.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libid2_split.so /bin/ln -f .id2_split.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] int result(-1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable ‘found_short’ set but not used [-Wunused-but-set-variable] int found_short(-1); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader.a /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader.so /bin/ln -f .ncbi_xreader-static.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader-static.dep /bin/ln -f .ncbi_xreader.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp: In instantiation of ‘bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp:1803:81: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp:1731:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqdb.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqdb.so /bin/ln -f .seqdb.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp -o objutil.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjutil.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjutil.so /bin/ln -f .xobjutil.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_cache.a /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_cache.so /bin/ln -f .ncbi_xreader_cache-static.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/ln -f .ncbi_xreader_cache.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id1.a /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id1.so /bin/ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id2.a /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id2.so /bin/ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastdb_format.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastdb_format.so /bin/ln -f .blastdb_format.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp: In function ‘void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef ‘TAlnRngColl’ locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function ‘void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:79:18: warning: variable ‘wholeL’ set but not used [-Wunused-but-set-variable] int wholeL(0); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_blastdb.so /bin/ln -f .ncbi_xloader_blastdb.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup_utils.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static bool ncbi::objects::CCleanup::IsGeneXrefUnnecessary(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const ncbi::objects::CGene_ref&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:686:84: warning: ‘ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)’ is deprecated [-Wdeprecated-declarations] sequence::Compare(g->second->GetLocation(), gene->GetLocation(), &scope) == sequence::eSame) { ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:52:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:59: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘ncbi::SIZE_TYPE ncbi::objects::s_TitleEndsInOrganism(const string&, const string&, ncbi::SIZE_TYPE*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:1803:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] answer = NStr::FindNoCase(sTitle, sPattern, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘void ncbi::objects::s_RemoveOrgFromEndOfProtein(ncbi::objects::CBioseq&, std::__cxx11::string)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:1857:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/biblio/biblio_macros.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/misc/sequence_macros.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp: In member function ‘ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp:1467:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::GBblockBC(ncbi::objects::CGB_block&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:1099:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*it, ";", tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_ExpandThisQual(ncbi::objects::CSeq_feat_Base::TQual&, std::vector >::iterator&, ncbi::objects::CSeq_feat_Base::TQual&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:4154:45: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(valueList, ",", newValues); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_TokenizeTRnaString(const string&, std::__cxx11::list >&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:4604:86: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( tRNA_string_copy, " \t\n\v\f\r", tRNA_tokens, NStr::eMergeDelims ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_CleanupOrgModNoteEC(ncbi::objects::COrg_ref&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5268:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] org.IsSetTaxname() && NStr::Equal(org.GetTaxname(), (*it)->GetSubname()))) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_SplitDbtag(ncbi::objects::CDbtag&, std::vector >&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5788:54: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( dbt.GetTag().GetStr(), ":", tags ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_SeqFeatTRNABC(ncbi::objects::CSeq_feat&, ncbi::objects::CTrna_ext&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5855:19: warning: unused variable ‘comment’ [-Wunused-variable] const string &comment = ( FIELD_IS_SET(feat, Comment) ? GET_FIELD(feat, Comment) : kEmptyStr ); ^~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_ParsePCRComponent(std::vector >&, const string*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5891:59: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( component_copy, string(","), out_list ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_ParsePCRColonString(std::vector >&, const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:6005:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( str, ":", out_list ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::Except_textBC(std::__cxx11::string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:7099:49: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize (except_text, ",", exceptions); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘bool ncbi::objects::s_SplitGeneSyn(const string&, std::vector >&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:7346:53: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( syn, ",", pieces_split_by_comma ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:7351:77: warning: ‘static std::vector >& ncbi::NStr::TokenizePattern(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::TokenizePattern( *piece_iter, "; ", pieces_split_by_semicolon ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2705:21: note: declared here vector& TokenizePattern(const CTempString str, ^~~~~~~~~~~~~~~ cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘bool ncbi::objects::HasAuthor(const ncbi::objects::CPubdesc&, bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:11133:10: warning: unused variable ‘is_patent’ [-Wunused-variable] bool is_patent = false; ^~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In static member function ‘static bool ncbi::objects::CNewCleanup_imp::ShouldRemoveAnnot(const ncbi::objects::CSeq_annot&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:11412:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (!s_RetainEmptyAnnot(annot) && ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ (annot.IsFtable() && annot.GetData().GetFtable().empty()) || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function ‘static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ match1->m_Score > match2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp: In member function ‘void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand1 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 != eNa_strand_minus)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_CreateDenseg()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o seqdb_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqdb_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: ‘width2’ may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSeqId::test_method()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:150:47: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(string(buffer), " ", tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In constructor ‘ncbi::CWriteDB_File::CWriteDB_File(const string&, const string&, int, Uint8, bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:120:24: warning: unused variable ‘MAX_FILE_SIZE’ [-Wunused-variable] static const Uint8 MAX_FILE_SIZE = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In member function ‘int ncbi::CWriteDB_File::Write(const ncbi::CTempString&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:152:24: warning: unused variable ‘MAX_OFFSET’ [-Wunused-variable] static const Uint8 MAX_OFFSET = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seq_writer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o blastdb_format_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o gene_info_reader /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gene_info_reader /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o seqdb_demo /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqdb_demo /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.so .libxcleanup.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcleanup.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjutil -lvalid -lsubmit -ltaxon3 -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxcleanup.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxcleanup.so /bin/ln -f .xcleanup.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xcleanup.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o seqdb_perf /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqdb_perf /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp: In static member function ‘static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/seqloc__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_services_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_services_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libwritedb.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libwritedb.so /bin/ln -f .writedb.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp: In function ‘const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] unsigned long tmp; ^~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqmasks_io.so /bin/ln -f .seqmasks_io.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=3,4 all cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function ‘bool ncbi::objects::CGBDataLoader::x_CreateReaders(const string&, const TParamTree*, ncbi::objects::CGBLoaderParams::EPreopenConnection)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:636:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, ";", str_list, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function ‘void ncbi::objects::CGBDataLoader::x_CreateWriters(const string&, const TParamTree*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:660:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, ";", str_list, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/dbindex.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/general__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alntext.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgoblastdbindex.so /bin/ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_genbank.a /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_genbank.so /bin/ln -f .ncbi_xloader_genbank-static.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/ln -f .ncbi_xloader_genbank.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/score_builder_base.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalnmgr.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalnmgr.so /bin/ln -f .xalnmgr.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/simple/simple_om.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjsimple.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjsimple.so /bin/ln -f .xobjsimple.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/dustmasker TMPL=dustmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/dustmasker/main.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o makembindex /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f makembindex /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/makembindex make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static void ncbi::align_format::CAlignFormatUtil::PrintTildeSepLines(std::__cxx11::string, size_t, ncbi::CNcbiOstream&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:208:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, "~", split_line); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/align_format/align_format_util.hpp:32, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static std::__cxx11::string ncbi::align_format::CAlignFormatUtil::MapTemplate(std::__cxx11::string, std::__cxx11::string, Int8)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:2992:70: warning: ‘static std::__cxx11::string ncbi::NStr::IntToString(long int, ncbi::NStr::TNumToStringFlags, int)’ is deprecated [-Wdeprecated-declarations] NStr::Replace(inpString,tmplParam,NStr::IntToString(templParamVal),outString); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/align_format/align_format_util.hpp:32, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5063:8: note: declared here string NStr::IntToString(long value, ^~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o dustmasker /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f dustmasker /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showdefline.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o writedb_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f writedb_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/align_format/showalign.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp: In function ‘void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp:4387:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp:4387:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~ cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/accession_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/basecount_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/comment_item.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Delta_ext_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Delta_ext.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/contig_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/date_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/dbsource_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/tabular.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/defline_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:45: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_item.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_SplitCommaSeparatedStringInParens(std::vector >&, const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:873:120: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( string_to_split.substr( 1, string_to_split.length() - amount_to_chop_off_end - 1), ",", output_vec ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:1391:49: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( raw_exception, ",", exceptions ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In function ‘const string& ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:1788:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_ParseParentQual(const ncbi::objects::CGb_qual&, std::__cxx11::list >&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:3346:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(val, "(,)", vals); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddRptUnitQual(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:3777:39: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(tmp, ",", units); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/ctrl_items.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/align_format/vectorscreen.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/vectorscreen.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor ‘ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: ‘unit_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ~^~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqblock/PIR_block_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqblock/PIR_block.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp: In member function ‘void ncbi::objects::CKeywordsItem::x_AddKeyword(const string&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp:378:38: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( keyword, ";", kywds ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/seqalignfilter.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/taxFormat.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/locus_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/aln_printer.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -ltaxon1 -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libalign_format.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libalign_format.so /bin/ln -f .align_format.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp: In member function ‘void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp: In static member function ‘static void ncbi::objects::CReferenceItem::ChangeMedlineAuthorsToISO(ncbi::CRef)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp:1300:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(author_name, " ", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/segment_item.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/sequence_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqblock/GB_block_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqblock/GB_block.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/version_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/wgs_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/tsa_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp: In member function ‘virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp:37:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Int_fuzz_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Int_fuzz.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_seqloc.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/win_mask_config.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp: In static member function ‘static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(type == eAny || type >= eGenerateMasksWithDuster) ^~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ arg_desc.AddDefaultKey( "dust_level", "dust_level", ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/qualifiers.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat.cpp:32: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgowinmask.so /bin/ln -f .xalgowinmask.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/context.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_cxx.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker TMPL=winmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function ‘bool ncbi::blast::CBlastOptionsLocal::Validate() const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:383:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:391:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return true; ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_app.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp: At global scope: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp:747:13: warning: ‘bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)’ defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_setup_cxx.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqdb -lblastdb -lseqmasks_io -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o windowmasker /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f windowmasker /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/windowmasker make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o align_format_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f align_format_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_gather.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_gather.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/biblio/Cit_book_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/biblio/Cit_book.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/item_formatter.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp: In member function ‘void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:173:10: warning: unused variable ‘nearFeatsSuppress’ [-Wunused-variable] bool nearFeatsSuppress = false; ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:176:10: warning: variable ‘isNgNtNwNz’ set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:177:10: warning: variable ‘isGED’ set but not used [-Wunused-but-set-variable] bool isGED = false; ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:178:10: warning: variable ‘isTPA’ set but not used [-Wunused-but-set-variable] bool isTPA = false; ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_formatter.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/format_item_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/format_item_ostream.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/tempstr.hpp:38:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGapItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::COriginItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CContigItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CPrimaryItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CTSAItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CWGSItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDBSourceItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSequenceItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CBaseCountItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatureItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceFeatureItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatHeaderItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CCommentItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CReferenceItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSegmentItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CKeywordsItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CHtmlAnchorItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGenomeProjectItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CVersionItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CAccessionItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDeflineItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CLocusItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CEndSectionItem]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/item_ostream.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/ostream_text_ostream.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/ostream_text_ostream.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blastx_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/origin_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_gather.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_formatter.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/accession_item.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp: In function ‘void ncbi::objects::s_GBSeqStringCleanup(std::__cxx11::string&, bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:82:36: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, " \n\r\t\b", l); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘virtual void ncbi::objects::CGBSeqFormatter::FormatGenomeProject(const ncbi::objects::CGenomeProjectItem&, ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:358:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(second, ",", ids); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘void ncbi::objects::CGBSeqFormatter::x_StrOStreamToTextOStream(ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:685:70: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split((string)CNcbiOstrstreamToString(m_StrStream), "\n", l); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/alignment_item.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp: In function ‘ncbi::objects::CFlatFileConfig::TGenbankBlocks ncbi::objects::{anonymous}::x_GetGenbankBlocks(const ncbi::CArgs&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp:832:52: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blocks_arg, ",", vecOfBlockNames); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/flat_file_config.hpp:34, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/pssm_engine.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/gap_item.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gap_item.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_project_item.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/cigar_formatter.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/sam_formatter.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/cigar_formatter.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_blast.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/gather_iter.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_iter.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/html_anchor_item.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_blast.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/gene_finder.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gene_finder.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/OrgMod_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/OrgMod.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/items/flat_qual_slots.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_qual_slots.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/defline_item.cpp -o defline_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 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-I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.so .libxformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxformat.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxformat.so /bin/ln -f .xformat.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xformat.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bl2seq.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psibl2seq.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_db_adapter.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_iteration.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp: In member function ‘void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] m_Query.Reset(new CObjMgrFree_QueryFactory(query_bioseq)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp:45:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psi_pssm_input.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp:380:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux_priv.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux_priv.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function ‘void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:474:41: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef seq_fetcher(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:47:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/dust_filter.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/search_strategy.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rps_aux.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/setup_factory.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/prelim_stage.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/traceback_stage.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/uniform_search.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/scoremat/Pssm.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp: In member function ‘virtual ncbi::CRef ncbi::blast::CLocalPssmSearch::Run()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp:171:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp:55:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_results.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_search.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/query_data.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgr_query_data.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_dbindex.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_cxx.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_aux_priv.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_blk.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/winmask_filter.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpsblast_local.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp: In member function ‘void ncbi::blast::CSeedTop::x_ParsePattern()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp:66:56: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(NStr::ToUpper(m_Pattern), "-", units); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seedtop.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/cdd_pssm_input.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include 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-I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT 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-std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include 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-I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE 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-std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxblast.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastfmtutil.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp: In constructor ‘ncbi::blast::CIgAnnotationInfo::CIgAnnotationInfo(ncbi::CConstRef&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:96:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:120:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp: In member function ‘void ncbi::blast::CIgBlast::x_ScreenV(ncbi::CRef&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:142:73: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((*it)->GetAlignLength() - (*it)->GetTotalGapCount(0) < m_IgOptions->m_MinVLength){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aalookup_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f aalookup_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/aalookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:506:86: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbimisc.hpp:1193:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:789:89: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbimisc.hpp:1193:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libigblast.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libigblast.so /bin/ln -f .igblast.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.igblast.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml2_format.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdiag_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastdiag_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdiag_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aascan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f aascan_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/aascan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_args.cpp:45: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function ‘void blastengine::testBlastpPrelimSearch::test_method()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastengine_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastengine_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastengine_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastextend_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastextend_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:52:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:54:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp: In member function ‘void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:507:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ~~~~~~^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp:41:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastp_args.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/build_archive.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastn_args.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/vecscreen_run.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blasthits_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blasthits_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastfilter_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp:25: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::RemoteOptionsTest::test_method()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:145:9: note: in definition of macro ‘BOOST_CHECK_NO_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testRemoteFilterString::test_method()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1328:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1332:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1337:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1339:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1343:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1345:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1349:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1351:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1355:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1357:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1324:50: warning: typedef ‘TBlast4Opts’ locally defined but not used [-Wunused-local-typedefs] typedef ncbi::objects::CBlast4_parameters TBlast4Opts; ^~~~~~~~~~~ In file included from /usr/include/boost/test/test_tools.hpp:45:0, from /usr/include/boost/test/unit_test.hpp:18, from /usr/include/boost/test/auto_unit_test.hpp:16, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:66, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testOptionsDeepCopy::test_method()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1396:57: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp: In member function ‘void ncbi::objects::CBlast_SAM_Formatter::x_ProcessCustomSpec(const string&, const ncbi::objects::CSAM_Formatter::SProgramInfo&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp:88:48: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(custom_spec, " ", format_tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp -o sam.o /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblastformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxformat -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lalign_format -lblastxml -lblastxml2 -lxhtml -lxcgi -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxblastformat.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libxblastformat.so /bin/ln -f .xblastformat.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastx_args.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gapinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxncbi -ldl -lm -lpthread -o gapinfo_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastoptions_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastn_args.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o gencode_singleton_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_besthit_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastx_args.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_culling_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastsetup_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastsetup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/psiblast_args.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o hspstream_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f hspstream_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/hspstream_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o msa2pssm_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/msa2pssm_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastn_args.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o phiblast_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f phiblast_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntscan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntscan_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f ntscan_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie optionshandle_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o optionshandle_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/optionshandle_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastp_args.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/deltablast_args.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_iteration_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o prelimsearch_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/psibl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastinput.so /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastinput.so /bin/ln -f .blastinput.dep /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function ‘static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq(ncbi::TGi)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:495:47: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function ‘static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set(const std::vector&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:509:47: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function ‘void QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths::test_method()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:580:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/pssmcreate_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie querydata_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f querydata_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/querydata_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Std_seg_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Std_seg.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/search_strategy.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rps_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f rps_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie scoreblk_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o scoreblk_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/scoreblk_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie remote_blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie search_strategy_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp: In instantiation of ‘void CSplitQueryTestFixture::x_ParseConfigLine(const string&, std::vector&) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:685:52: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:916:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(input, ",", tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp: In instantiation of ‘void CSplitQueryTestFixture::x_ParseConfigLine(const string&, std::vector&) [with T = int; std::__cxx11::string = std::__cxx11::basic_string]’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:903:13: required from ‘void CSplitQueryTestFixture::x_ReadVectorOfVectorsForTest(const string&, const char*, std::vector >&) [with T = int; std::__cxx11::string = std::__cxx11::basic_string]’ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:405:75: required from here /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:916:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(input, ",", tokens); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o setupfactory_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/setupfactory_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j --jobserver-fds=3,4 all cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie stat_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o stat_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f stat_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/stat_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/subj_ranges_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie split_query_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o split_query_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f split_query_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/split_query_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie traceback_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f traceback_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o version_reference_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f version_reference_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o tracebacksearch_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/tracebacksearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie uniform_search_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o uniform_search_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/uniform_search_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blast_formatter -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blast_formatter.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function ‘void blast_archive::BuildArchiveWithDB::test_method()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:79:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:48:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function ‘void blast_archive::BuildArchiveWithBl2seq::test_method()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:118:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:48:0: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blastn -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I../ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blastp -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blastn_app.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blastp_app.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blast_formatter /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_formatter /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blastx -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blastx_app.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastn /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=deltablast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/deltablast.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/deltablast_app.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastp /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastp /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o blast_format_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_format_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=psiblast -w -j --jobserver-fds=3,4 all make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=rpsblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/psiblast_app.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/rpsblast_app.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastx /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastx /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=rpstblastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/rpstblastn_app.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o rpsblast /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f rpsblast /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=seedtop -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o deltablast /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f deltablast /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=tblastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/seedtop_app.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o psiblast /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psiblast /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=tblastx -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/tblastn_app.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/tblastx_app.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o rpstblastn /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f rpstblastn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdb_aliastool.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o seedtop /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seedtop /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdbcheck -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o tblastx /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f tblastx /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdbcmd -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:39: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o tblastn /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f tblastn /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp:43: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdbcp -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘int CAliasTest::DoTest(const string&, TSeen&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:720:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*line, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘virtual bool CDbTest::Test(CTestActionList&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:941:54: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(m_Db, " ", dbs, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdb_aliastool /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdb_aliastool /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=convert2blastmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcp.cpp:33: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp: In member function ‘int CBlastDBCmdApp::x_ProcessBatchEntry(const ncbi::CArgs&, ncbi::CSeqFormatter&)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp:446:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(queries.empty()) ^~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp:449:13: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ TSeqRange seq_range(TSeqRange::GetEmpty()); ^~~~~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/convert2blastmask.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcp /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdbcp /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=makeblastdb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcheck /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdbcheck /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqmasks_io -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o convert2blastmask /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f convert2blastmask /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=makeprofiledb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:42: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/masked_range_set.cpp:31: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcmd /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdbcmd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/segmasker TMPL=segmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeprofiledb.cpp:40: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/segmasker/segmasker.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp: In member function ‘void CMakeBlastDBApp::x_ProcessMaskData()’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:820:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:845:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:858:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:41: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjsimple -lseqmasks_io -lxalgosegmask -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o segmasker /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f segmasker /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o makeprofiledb /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f makeprofiledb /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o makeblastdb /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f makeblastdb /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:37: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:38: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o delta_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f delta_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/delta_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psiblast_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/psiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bl2seq_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/bl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastinput_unit_test /bin/bash /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastinput_unit_test /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build' make[2]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build' make[1]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' dh_auto_test /usr/bin/make -j1 check VERBOSE=1 make[2]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++' if test -s ""; then \ cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build' ====================================================================== make[4]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress' /bin/echo 'Warning: non-existent sub-project "diff"' Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make -C services -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "ext"' Warning: non-existent sub-project "ext" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/html' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system' /usr/bin/make -C helpers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' /usr/bin/make -f /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /bin/echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -C blastxml2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/ncbimime' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -C gbproj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbproj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbproj' /usr/bin/make -C trackmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/trackmgr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/trackmgr' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/access' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/macro' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/macro' /usr/bin/make -C genesbyloc -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genesbyloc' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genesbyloc' /usr/bin/make -C coords -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/coords' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects/coords' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/make -C edit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" /bin/echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /bin/echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" /bin/echo 'Warning: non-existent sub-project "uudutil"' Warning: non-existent sub-project "uudutil" /bin/echo 'Warning: non-existent sub-project "variation"' Warning: non-existent sub-project "variation" /bin/echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test TEST -- algo/blast/unit_tests/api/aalookup_unit_test TEST -- algo/blast/unit_tests/api/seqsrc_unit_test TEST -- algo/blast/unit_tests/api/delta_unit_test TEST -- algo/blast/unit_tests/api/ntlookup_unit_test TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test TEST -- algo/blast/unit_tests/api/setupfactory_unit_test TEST -- algo/blast/unit_tests/api/search_strategy_unit_test TEST -- algo/blast/unit_tests/api/redoalignment_unit_test TEST -- algo/blast/unit_tests/api/queryinfo_unit_test TEST -- algo/blast/unit_tests/api/querydata_unit_test TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test TEST -- algo/blast/unit_tests/api/blastsetup_unit_test TEST -- algo/blast/unit_tests/api/blastextend_unit_test TEST -- algo/blast/unit_tests/api/blastdiag_unit_test TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test TEST -- algo/blast/unit_tests/api/optionshandle_unit_test TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test TEST -- algo/blast/unit_tests/api/traceback_unit_test TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test TEST -- algo/blast/unit_tests/api/psiblast_unit_test TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test TEST -- algo/blast/unit_tests/api/phiblast_unit_test TEST -- algo/blast/unit_tests/api/split_query_unit_test TEST -- algo/blast/unit_tests/api/scoreblk_unit_test TEST -- algo/blast/unit_tests/api/hspstream_unit_test TEST -- algo/blast/unit_tests/api/rps_unit_test TEST -- algo/blast/unit_tests/api/gapinfo_unit_test TEST -- algo/blast/unit_tests/api/blasthits_unit_test TEST -- algo/blast/unit_tests/api/linkhsp_unit_test TEST -- algo/blast/unit_tests/api/blastengine_unit_test TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test TEST -- algo/blast/unit_tests/api/version_reference_unit_test TEST -- algo/blast/unit_tests/api/ntscan_unit_test TEST -- algo/blast/unit_tests/api/aascan_unit_test TEST -- algo/blast/unit_tests/api/remote_blast_unit_test TEST -- algo/blast/unit_tests/api/uniform_search_unit_test TEST -- algo/blast/unit_tests/api/blastfilter_unit_test TEST -- algo/blast/unit_tests/api/blastoptions_unit_test TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test TEST -- algo/blast/unit_tests/api/bl2seq_unit_test TEST -- algo/blast/unit_tests/api/stat_unit_test make[8]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /bin/echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" /bin/echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" /bin/echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" /bin/echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" /bin/echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" /bin/echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" /bin/echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" /bin/echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" /bin/echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" /bin/echo 'Warning: non-existent sub-project "primer"' Warning: non-existent sub-project "primer" /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo' /bin/echo 'Warning: non-existent sub-project "misc"' Warning: non-existent sub-project "misc" /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" /bin/echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" /bin/echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" /bin/echo 'Warning: non-existent sub-project "asn_cleanup"' Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /bin/echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" /bin/echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" /bin/echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" /bin/echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" /bin/echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" /bin/echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /bin/echo 'Warning: non-existent sub-project "vecscreen"' Warning: non-existent sub-project "vecscreen" /bin/echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" /bin/echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" /bin/echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" /bin/echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" /bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" /bin/echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" /bin/echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" /bin/echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" /bin/echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" /bin/echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" /bin/echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" /bin/echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" /bin/echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" /bin/echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" /bin/echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" /bin/echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" /bin/echo 'Warning: non-existent sub-project "lds2_indexer"' Warning: non-existent sub-project "lds2_indexer" /bin/echo 'Warning: non-existent sub-project "discrep_report"' Warning: non-existent sub-project "discrep_report" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "biosample_chk"' Warning: non-existent sub-project "biosample_chk" /bin/echo 'Warning: non-existent sub-project "gap_stats"' Warning: non-existent sub-project "gap_stats" /bin/echo 'Warning: non-existent sub-project "table2asn"' Warning: non-existent sub-project "table2asn" /bin/echo 'Warning: non-existent sub-project "srcchk"' Warning: non-existent sub-project "srcchk" /bin/echo 'Warning: non-existent sub-project "tableval"' Warning: non-existent sub-project "tableval" /bin/echo 'Warning: non-existent sub-project "ncbi_encrypt"' Warning: non-existent sub-project "ncbi_encrypt" /bin/echo 'Warning: non-existent sub-project "ssub_fork"' Warning: non-existent sub-project "ssub_fork" /bin/echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" /bin/echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" /bin/echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" /bin/echo 'Warning: non-existent sub-project "rmblastn"' Warning: non-existent sub-project "rmblastn" /bin/echo 'Warning: non-existent sub-project "dblb"' Warning: non-existent sub-project "dblb" /bin/echo 'Warning: non-existent sub-project "tls"' Warning: non-existent sub-project "tls" make[5]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" /bin/echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/align_format/unit_test/align_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/blastinput/unit_test/blastinput_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blast_format/blast_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blastdb/bdbloader_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/aalookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqsrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/delta_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntlookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqinfosrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/setupfactory_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/search_strategy_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/redoalignment_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/queryinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/querydata_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastsetup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastextend_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmcreate_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_iteration_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_culling_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/optionshandle_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/msa2pssm_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/tracebacksearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/traceback_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psibl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/prelimsearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/phiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/split_query_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/scoreblk_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspstream_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/rps_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gapinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blasthits_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/linkhsp_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastengine_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/subj_ranges_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/version_reference_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntscan_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/remote_blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/uniform_search_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastfilter_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastoptions_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gencode_singleton_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/bl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/stat_unit_test (unmet CHECK_REQUIRES) Done. OK -- [serial/datatool] datatool.sh (real 0.31, user 0.15, sys 0.00) SKP -- [serial/datatool] datatool_xml.sh OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.00, sys 0.00) OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.02, user 0.00, sys 0.00) ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.25, user 0.06, sys 0.05) Succeeded : 3 Timeout : 0 Failed : 1 Absent : 1 /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.meta_r:46: recipe for target 'check_r.real' failed make[3]: *** [check_r.real] Error 7 make[3]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build' Makefile:33: recipe for target 'check' failed make[2]: *** [check] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++' dh_auto_test: /usr/bin/make -j1 check VERBOSE=1 returned exit code 2 debian/rules:60: recipe for target 'override_dh_auto_test' failed make[1]: [override_dh_auto_test] Error 2 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.25, user 0.06, sys 0.05) ====================================================================== aascan_unit_test ====================================================================== 09806/000/0000/PB 1F84264E7A620F61 0001/0001 2016-08-06T17:40:06.706051 bos01-ppc64el-021 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test Running 4 test cases... 09806/000/0000/PE 1F84264E7A620F61 0002/0002 2016-08-06T17:40:06.709444 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test extra ncbi_phid=1F84264E7A620F61000000000000AD33 09806/000/0000/PE 1F84264E7A620F61 0003/0003 2016-08-06T17:40:06.801443 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#1000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0004/0004 2016-08-06T17:40:06.801487 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0005/0005 2016-08-06T17:40:06.801515 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0006/0006 2016-08-06T17:40:06.801536 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0008/0008 2016-08-06T17:40:06.804398 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#2000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0009/0009 2016-08-06T17:40:06.804422 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0010/0010 2016-08-06T17:40:06.804445 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0011/0011 2016-08-06T17:40:06.804464 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0013/0013 2016-08-06T17:40:07.817388 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#3000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0014/0014 2016-08-06T17:40:07.817496 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0015/0015 2016-08-06T17:40:07.817537 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0016/0016 2016-08-06T17:40:07.817565 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0018/0018 2016-08-06T17:40:10.325763 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#4000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0019/0019 2016-08-06T17:40:10.325852 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0020/0020 2016-08-06T17:40:10.325897 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0021/0021 2016-08-06T17:40:10.325931 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0023/0023 2016-08-06T17:40:15.080077 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#5000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0024/0024 2016-08-06T17:40:15.080141 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0025/0025 2016-08-06T17:40:15.080167 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0026/0026 2016-08-06T17:40:15.080189 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(250): last checkpoint: "ScanOffsetTest" fixture entry. 09806/000/0000/PE 1F84264E7A620F61 0030/0030 2016-08-06T17:40:15.083752 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#6000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0031/0031 2016-08-06T17:40:15.083775 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0032/0032 2016-08-06T17:40:15.083800 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0033/0033 2016-08-06T17:40:15.083825 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0035/0035 2016-08-06T17:40:15.086321 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#7000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0036/0036 2016-08-06T17:40:15.086345 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0037/0037 2016-08-06T17:40:15.086367 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0038/0038 2016-08-06T17:40:15.086385 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0040/0040 2016-08-06T17:40:16.092019 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#8000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0041/0041 2016-08-06T17:40:16.092085 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0042/0042 2016-08-06T17:40:16.092125 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0043/0043 2016-08-06T17:40:16.092157 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0045/0045 2016-08-06T17:40:18.598894 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#9000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0046/0046 2016-08-06T17:40:18.599043 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0047/0047 2016-08-06T17:40:18.599090 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0048/0048 2016-08-06T17:40:18.599126 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0050/0050 2016-08-06T17:40:23.353440 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#10000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0051/0051 2016-08-06T17:40:23.353495 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0052/0052 2016-08-06T17:40:23.353565 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0053/0053 2016-08-06T17:40:23.353599 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanMaxHitsTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(330): last checkpoint: "ScanMaxHitsTest" fixture entry. 09806/000/0000/PE 1F84264E7A620F61 0057/0057 2016-08-06T17:40:23.358261 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#11000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0058/0058 2016-08-06T17:40:23.358301 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0059/0059 2016-08-06T17:40:23.358340 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0060/0060 2016-08-06T17:40:23.358371 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0062/0062 2016-08-06T17:40:23.361276 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#12000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0063/0063 2016-08-06T17:40:23.361307 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0064/0064 2016-08-06T17:40:23.361342 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0065/0065 2016-08-06T17:40:23.361366 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0067/0067 2016-08-06T17:40:24.364964 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#13000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0068/0068 2016-08-06T17:40:24.365056 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0069/0069 2016-08-06T17:40:24.365081 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0070/0070 2016-08-06T17:40:24.365101 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0072/0072 2016-08-06T17:40:26.872309 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#14000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0073/0073 2016-08-06T17:40:26.872384 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0074/0074 2016-08-06T17:40:26.872430 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0075/0075 2016-08-06T17:40:26.872467 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0077/0077 2016-08-06T17:40:31.626659 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#15000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0078/0078 2016-08-06T17:40:31.626729 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0079/0079 2016-08-06T17:40:31.626777 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0080/0080 2016-08-06T17:40:31.626813 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/SkipMaskedRanges": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(383): last checkpoint: "SkipMaskedRanges" fixture entry. 09806/000/0000/PE 1F84264E7A620F61 0084/0084 2016-08-06T17:40:31.631101 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#16000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0085/0085 2016-08-06T17:40:31.631145 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0086/0086 2016-08-06T17:40:31.631186 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0087/0087 2016-08-06T17:40:31.631218 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0089/0089 2016-08-06T17:40:31.634363 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#17000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0090/0090 2016-08-06T17:40:31.634403 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0091/0091 2016-08-06T17:40:31.634444 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0092/0092 2016-08-06T17:40:31.634477 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0094/0094 2016-08-06T17:40:32.638116 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#18000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0095/0095 2016-08-06T17:40:32.638195 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0096/0096 2016-08-06T17:40:32.638248 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0097/0097 2016-08-06T17:40:32.638282 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0099/0099 2016-08-06T17:40:35.143139 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#19000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0100/0100 2016-08-06T17:40:35.143193 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0101/0101 2016-08-06T17:40:35.143235 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0102/0102 2016-08-06T17:40:35.143268 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09806/000/0000/PE 1F84264E7A620F61 0104/0104 2016-08-06T17:40:39.899605 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#20000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09806/000/0000/PE 1F84264E7A620F61 0105/0105 2016-08-06T17:40:39.899675 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=bos01-ppc64el-021.buildd(127.0.1.1)&platform=powerpc64le-unknown-linux-gnu] Failed to connect: Unknown 09806/000/0000/PE 1F84264E7A620F61 0106/0106 2016-08-06T17:40:39.899723 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09806/000/0000/PE 1F84264E7A620F61 0107/0107 2016-08-06T17:40:39.899761 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanCheckScores": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(433): last checkpoint: "ScanCheckScores" fixture entry. Executed 4 test cases. *** 4 failures are detected in the test module "Master Test Suite" 09806/000/0000/PE 1F84264E7A620F61 0111/0111 2016-08-06T17:40:39.904476 bos01-ppc64el-021 UNK_CLIENT 1F84264E7A620F61_0000SID aascan_unit_test stop 201 33.223215103 Command exited with non-zero status 201 real 33.25 user 0.06 sys 0.05 Start time : 08/06/2016 17:40:06 Stop time : 08/06/2016 17:40:39 Load averages: 1.93 3.33 2.58 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 201 make[1]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' fakeroot debian/rules binary-arch dh binary-arch -Dc++ --with autotools_dev dh_testroot -a -O-Dc\+\+ dh_prep -a -O-Dc\+\+ dh_installdirs -a -O-Dc\+\+ debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' # cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' debian/rules override_dh_install-arch make[1]: Entering directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool debian/ncbi-blast+/usr/bin/run_with_lock \ debian/ncbi-blast+/usr/bin/project_tree_builder for x in debian/ncbi-blast+/usr/bin/*; do \ LD_LIBRARY_PATH=c++/BUILD/lib ldd $x; \ done 2>/dev/null | awk '/BUILD/ { print $3 }' | sort -u | \ xargs cp -v -t debian/ncbi-blast+/usr/lib/ncbi-blast+ 'c++/BUILD/lib/libalign_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libalign_format.so' 'c++/BUILD/lib/libbiblio.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libbiblio.so' 'c++/BUILD/lib/libblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast.so' 'c++/BUILD/lib/libblast_services.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast_services.so' 'c++/BUILD/lib/libblastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb.so' 'c++/BUILD/lib/libblastdb_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb_format.so' 'c++/BUILD/lib/libblastinput.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastinput.so' 'c++/BUILD/lib/libblastxml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml.so' 'c++/BUILD/lib/libblastxml2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml2.so' 'c++/BUILD/lib/libcomposition_adjustment.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcomposition_adjustment.so' 'c++/BUILD/lib/libcreaders.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcreaders.so' 'c++/BUILD/lib/libgbseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgbseq.so' 'c++/BUILD/lib/libgene_info.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgene_info.so' 'c++/BUILD/lib/libgeneral.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgeneral.so' 'c++/BUILD/lib/libgenome_collection.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgenome_collection.so' 'c++/BUILD/lib/libid1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid1.so' 'c++/BUILD/lib/libid2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid2.so' 'c++/BUILD/lib/libmedlars.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedlars.so' 'c++/BUILD/lib/libmedline.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedline.so' 'c++/BUILD/lib/libmla.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmla.so' 'c++/BUILD/lib/libmlacli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmlacli.so' 'c++/BUILD/lib/libncbi_xloader_blastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so' 'c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so' 'c++/BUILD/lib/libncbi_xloader_genbank.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_genbank.so' 'c++/BUILD/lib/libncbi_xreader.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader.so' 'c++/BUILD/lib/libncbi_xreader_cache.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_cache.so' 'c++/BUILD/lib/libncbi_xreader_id1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id1.so' 'c++/BUILD/lib/libncbi_xreader_id2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id2.so' 'c++/BUILD/lib/libpub.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpub.so' 'c++/BUILD/lib/libpubmed.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpubmed.so' 'c++/BUILD/lib/libscoremat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libscoremat.so' 'c++/BUILD/lib/libseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseq.so' 'c++/BUILD/lib/libseqcode.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqcode.so' 'c++/BUILD/lib/libseqdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqdb.so' 'c++/BUILD/lib/libseqedit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqedit.so' 'c++/BUILD/lib/libseqmasks_io.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqmasks_io.so' 'c++/BUILD/lib/libseqset.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqset.so' 'c++/BUILD/lib/libseqsplit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqsplit.so' 'c++/BUILD/lib/libsequtil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsequtil.so' 'c++/BUILD/lib/libsubmit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsubmit.so' 'c++/BUILD/lib/libtables.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtables.so' 'c++/BUILD/lib/libtaxon1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon1.so' 'c++/BUILD/lib/libtaxon3.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon3.so' 'c++/BUILD/lib/libvalid.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libvalid.so' 'c++/BUILD/lib/libwritedb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libwritedb.so' 'c++/BUILD/lib/libxalgoblastdbindex.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgoblastdbindex.so' 'c++/BUILD/lib/libxalgodustmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgodustmask.so' 'c++/BUILD/lib/libxalgosegmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgosegmask.so' 'c++/BUILD/lib/libxalgowinmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgowinmask.so' 'c++/BUILD/lib/libxalnmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalnmgr.so' 'c++/BUILD/lib/libxblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblast.so' 'c++/BUILD/lib/libxblastformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblastformat.so' 'c++/BUILD/lib/libxcgi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcgi.so' 'c++/BUILD/lib/libxcleanup.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcleanup.so' 'c++/BUILD/lib/libxcompress.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcompress.so' 'c++/BUILD/lib/libxconnect.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxconnect.so' 'c++/BUILD/lib/libxformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxformat.so' 'c++/BUILD/lib/libxhtml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxhtml.so' 'c++/BUILD/lib/libxncbi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxncbi.so' 'c++/BUILD/lib/libxnetblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblast.so' 'c++/BUILD/lib/libxnetblastcli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblastcli.so' 'c++/BUILD/lib/libxobjmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjmgr.so' 'c++/BUILD/lib/libxobjread.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjread.so' 'c++/BUILD/lib/libxobjutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjutil.so' 'c++/BUILD/lib/libxregexp.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxregexp.so' 'c++/BUILD/lib/libxser.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxser.so' 'c++/BUILD/lib/libxutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxutil.so' make[1]: Leaving directory '/build/ncbi-blast+-99cXMX/ncbi-blast+-2.4.0' dh_installdocs -a -O-Dc\+\+ dh_installchangelogs -a -O-Dc\+\+ dh_installexamples -a -O-Dc\+\+ dh_installman -a -O-Dc\+\+ dh_installcatalogs -a -O-Dc\+\+ dh_installcron -a -O-Dc\+\+ dh_installdebconf -a -O-Dc\+\+ dh_installemacsen -a -O-Dc\+\+ dh_installifupdown -a -O-Dc\+\+ dh_installinfo -a -O-Dc\+\+ dh_installinit -a -O-Dc\+\+ dh_installmenu -a -O-Dc\+\+ dh_installmime -a -O-Dc\+\+ dh_installmodules -a -O-Dc\+\+ dh_installlogcheck -a -O-Dc\+\+ dh_installlogrotate -a -O-Dc\+\+ dh_installpam -a -O-Dc\+\+ dh_installppp -a -O-Dc\+\+ dh_installudev -a -O-Dc\+\+ dh_installgsettings -a -O-Dc\+\+ dh_bugfiles -a -O-Dc\+\+ dh_ucf -a -O-Dc\+\+ dh_lintian -a -O-Dc\+\+ dh_gconf -a -O-Dc\+\+ dh_icons -a -O-Dc\+\+ dh_perl -a -O-Dc\+\+ dh_usrlocal -a -O-Dc\+\+ dh_link -a -O-Dc\+\+ dh_installwm -a -O-Dc\+\+ dh_installxfonts -a -O-Dc\+\+ dh_strip_nondeterminism -a -O-Dc\+\+ dh_compress -a -O-Dc\+\+ dh_fixperms -a -O-Dc\+\+ dh_strip -a -O-Dc\+\+ dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform ppc64el: ncbi-blast+ dh_strip debug symbol extraction: packages to act on: ncbi-blast+ dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package ncbi-blast+: unused substitution variable ${perl:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a -O-Dc\+\+ dh_shlibdeps -a -O-Dc\+\+ dh_installdeb -a -O-Dc\+\+ dh_gencontrol -a -O-Dc\+\+ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform ppc64el: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: ncbi-blast+ dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package ncbi-blast+ (pkgdir debian/ncbi-blast+, ddeb package dir debian/ncbi-blast+-dbgsym) dh_gencontrol debug symbol wrapper: building ncbi-blast+-dbgsym_2.4.0-3_ppc64el.ddeb dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.4.0-3_ppc64el.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile ncbi-blast+-dbgsym_2.4.0-3_ppc64el.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O-Dc\+\+ dh_builddeb -a -O-Dc\+\+ INFO: pkgstriptranslations version 130 pkgstriptranslations: processing ncbi-blast+ (in debian/ncbi-blast+); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+/DEBIAN/control, package ncbi-blast+, directory debian/ncbi-blast+ pkgstripfiles: Truncating usr/share/doc/ncbi-blast+/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncbi-blast+ ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.4.0-3_ppc64el.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../ncbi-blast+_2.4.0-3_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build ncbi-blast+-2.4.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20160806-1746 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ncbi-blast+_2.4.0-3_ppc64el.changes: ------------------------------------ Format: 1.8 Date: Fri, 05 Aug 2016 19:47:24 -0400 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy Architecture: ppc64el Version: 2.4.0-3 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Aaron M. Ucko Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 833538 833539 833541 Changes: ncbi-blast+ (2.4.0-3) unstable; urgency=medium . * debian/rules: - Properly build (but don't install) run_with_lock. (Closes: #833538.) - Comment out nostrip check, which yielded a useless dbgsym package. * Reinstate and refresh the hurd_fixes patch, which mostly still applies. (Closes: #833539.) * Add a new support_x32 patch to avoid picking up wrong inline assembly. (Closes: #833541.) Checksums-Sha1: ddf89e0753d53393af9af123a880b1aad0a79179 105815266 ncbi-blast+-dbgsym_2.4.0-3_ppc64el.ddeb c050dc6cb3274dc1857f2c6a2fc8cf3e435faeeb 9038712 ncbi-blast+_2.4.0-3_ppc64el.deb Checksums-Sha256: ff091de9caab74ca871760df9780e2fc7d4d63fb869c2a5161f065be27445db5 105815266 ncbi-blast+-dbgsym_2.4.0-3_ppc64el.ddeb 96f77dfdcc0bce1a8b935990d4b1075ac372d9766e651a6df6f487061016ca06 9038712 ncbi-blast+_2.4.0-3_ppc64el.deb Files: 8833c75ab8c1d153847dfb42e7272a6a 105815266 science extra ncbi-blast+-dbgsym_2.4.0-3_ppc64el.ddeb 2f21436d44b19371fa232e935fdcea0f 9038712 science optional ncbi-blast+_2.4.0-3_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ncbi-blast+_2.4.0-3_ppc64el.deb ------------------------------- new debian package, version 2.0. size 9038712 bytes: control archive=3775 bytes. 1290 bytes, 25 lines control 6606 bytes, 100 lines md5sums Package: ncbi-blast+ Version: 2.4.0-3 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 47319 Depends: ncbi-data, python, perl:any, libbz2-1.0, libc6 (>= 2.22), libgcc1 (>= 1:3.4.4), libgomp1 (>= 4.9), libpcre3, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. drwxr-xr-x root/root 0 2016-08-05 23:47 ./ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/bin/ -rwxr-xr-x root/root 264608 2016-08-05 23:47 ./usr/bin/blast_formatter -rwxr-xr-x root/root 133432 2016-08-05 23:47 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 198928 2016-08-05 23:47 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 199040 2016-08-05 23:47 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 133328 2016-08-05 23:47 ./usr/bin/blastdbcp -rwxr-xr-x root/root 264600 2016-08-05 23:47 ./usr/bin/blastn -rwxr-xr-x root/root 264600 2016-08-05 23:47 ./usr/bin/blastp -rwxr-xr-x root/root 264600 2016-08-05 23:47 ./usr/bin/blastx -rwxr-xr-x root/root 133296 2016-08-05 23:47 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 264600 2016-08-05 23:47 ./usr/bin/deltablast -rwxr-xr-x root/root 67744 2016-08-05 23:47 ./usr/bin/dustmasker -rwxr-xr-x root/root 67752 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+------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 3090624 Build-Time: 1757 Distribution: yakkety-proposed Host Architecture: ppc64el Install-Time: 14 Job: ncbi-blast+_2.4.0-3.dsc Machine Architecture: ppc64el Package: ncbi-blast+ Package-Time: 1774 Source-Version: 2.4.0-3 Space: 3090624 Status: successful Version: 2.4.0-3 -------------------------------------------------------------------------------- Finished at 20160806-1746 Build needed 00:29:34, 3090624k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-10573703'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-10573703/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-10573703'] Unmounting chroot for build PACKAGEBUILD-10573703... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-10573703'] Removing build PACKAGEBUILD-10573703