RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lcy01-03 3.13.0-92-generic #139-Ubuntu SMP Tue Jun 28 20:42:26 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.7 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.26. Syncing the system clock with the buildd NTP service... 6 Aug 17:16:36 ntpdate[1662]: adjust time server 10.211.37.1 offset 0.138499 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-10573698', '/home/buildd/filecache-default/063eeb43ee0a3186cd7a3c6a3a452f2f4c9a8d95'] Unpacking chroot for build PACKAGEBUILD-10573698 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-10573698'] Mounting chroot for build PACKAGEBUILD-10573698 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-10573698', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-10573698 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-10573698', 'amd64'] Updating debian chroot for build PACKAGEBUILD-10573698 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 Packages [1180 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [565 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe amd64 Packages [7787 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4486 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main amd64 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe amd64 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main amd64 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe amd64 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 Packages [138 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [52.3 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 Packages [640 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [242 kB] Fetched 15.6 MB in 6s (2465 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-6 g++-6 gcc-6 libasan3 libcap-ng0 libgcc-6-dev libmpx2 libpng16-16 libprocps6 libstdc++-6-dev The following packages will be upgraded: apt apt-transport-https base-files bash binutils bsdutils bzip2 cpp cpp-5 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcilkrts5 libcomerr2 libcryptsetup4 libcurl3-gnutls libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgdbm3 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn11 libisl15 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 liblsan0 liblzma5 libmount1 libmpfr4 libmpx0 libncurses5 libncursesw5 libp11-kit0 libpcre3 libperl5.22 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.22 pkgbinarymangler policyrcd-script-zg2 procps sed systemd systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 140 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 169 MB of archives. After this operation, 489 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main amd64 base-files amd64 9.6ubuntu2 [56.5 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 debianutils amd64 4.8 [85.7 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 bash amd64 4.3-15ubuntu1 [593 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 bsdutils amd64 1:2.28-5ubuntu2 [54.9 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 tar amd64 1.29b-1 [230 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg amd64 1.18.9ubuntu2 [2142 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 dash amd64 0.5.8-2.3ubuntu1 [104 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc6-dev amd64 2.23-1ubuntu1 [2082 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc-dev-bin amd64 2.23-1ubuntu1 [68.8 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 linux-libc-dev amd64 4.4.0-34.53 [834 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-6-base amd64 6.1.1-11ubuntu12 [16.9 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc1 amd64 1:6.1.1-11ubuntu12 [38.6 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc6 amd64 2.23-1ubuntu1 [2580 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main amd64 e2fslibs amd64 1.43.1-1 [152 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 e2fsprogs amd64 1.43.1-1 [484 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main amd64 findutils amd64 4.6.0+git+20160703-2 [281 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main amd64 grep amd64 2.25-6 [152 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main amd64 hostname amd64 3.18 [11.0 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 login amd64 1:4.2-3.1ubuntu6 [305 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsmartcols1 amd64 2.28-5ubuntu2 [64.6 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libaudit-common all 1:2.6.5-1ubuntu1 [4660 B] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcap-ng0 amd64 0.7.7-3 [10.9 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libaudit1 amd64 1:2.6.5-1ubuntu1 [37.3 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libpcre3 amd64 2:8.39-1 [228 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 libselinux1 amd64 2.5-3 [65.3 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsepol1 amd64 2.5-1 [216 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsemanage-common all 2.5-1 [6800 B] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsemanage1 amd64 2.5-1 [80.3 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 bzip2 amd64 1.0.6-8build1 [33.5 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 libbz2-1.0 amd64 1.0.6-8build1 [30.6 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 passwd amd64 1:4.2-3.1ubuntu6 [781 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main amd64 libuuid1 amd64 2.28-5ubuntu2 [15.2 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 libblkid1 amd64 2.28-5ubuntu2 [106 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfdisk1 amd64 2.28-5ubuntu2 [138 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-modules-5.22 all 5.22.2-3 [2631 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main amd64 libperl5.22 amd64 5.22.2-3 [3397 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl amd64 5.22.2-3 [238 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-base amd64 5.22.2-3 [1299 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdb5.3 amd64 5.3.28-12 [669 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgdbm3 amd64 1.8.3-14 [16.8 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g amd64 1:1.2.8.dfsg-2ubuntu5 [51.1 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main amd64 init-system-helpers all 1.42 [37.5 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main amd64 util-linux amd64 2.28-5ubuntu2 [888 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysvinit-utils amd64 2.88dsf-59.8git1 [18.3 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main amd64 mount amd64 2.28-5ubuntu2 [123 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main amd64 ncurses-bin amd64 6.0+20160625-1ubuntu1 [136 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main amd64 sed amd64 4.2.2-7.1 [140 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main amd64 init amd64 1.42 [5158 B] Get:49 http://ftpmaster.internal/ubuntu yakkety/main amd64 libc-bin amd64 2.23-1ubuntu1 [632 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main amd64 ncurses-base all 6.0+20160625-1ubuntu1 [16.6 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblzma5 amd64 5.1.1alpha+20120614-2.1ubuntu1 [81.0 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++6 amd64 6.1.1-11ubuntu12 [400 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main amd64 libapt-pkg5.0 amd64 1.3~pre3 [745 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main amd64 ubuntu-keyring all 2016.05.13 [16.5 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt amd64 1.3~pre3 [1027 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main amd64 debconf all 1.5.59ubuntu1 [136 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgpg-error0 amd64 1.24-1 [34.0 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcrypt20 amd64 1.7.2-2 [399 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libapparmor1 amd64 2.10.95-4ubuntu3 [32.2 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcap2 amd64 1:2.25-1 [13.3 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main amd64 libudev1 amd64 231-1 [59.9 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdevmapper1.02.1 amd64 2:1.02.130-1ubuntu1 [161 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcryptsetup4 amd64 2:1.7.2-0ubuntu1 [76.0 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main amd64 libidn11 amd64 1.33-1 [45.0 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkmod2 amd64 22-1.1ubuntu1 [39.9 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmount1 amd64 2.28-5ubuntu2 [116 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main amd64 libseccomp2 amd64 2.3.1-2ubuntu2 [36.8 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcap2-bin amd64 1:2.25-1 [20.1 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsystemd0 amd64 231-1 [212 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd amd64 231-1 [2269 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd-sysv amd64 231-1 [16.8 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcomerr2 amd64 1.43.1-1 [9840 B] Get:73 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdebconfclient0 amd64 0.213ubuntu1 [6048 B] Get:74 http://ftpmaster.internal/ubuntu yakkety/main amd64 libncurses5 amd64 6.0+20160625-1ubuntu1 [93.0 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtinfo5 amd64 6.0+20160625-1ubuntu1 [77.0 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main amd64 libncursesw5 amd64 6.0+20160625-1ubuntu1 [114 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main amd64 libss2 amd64 1.43.1-1 [10.8 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main amd64 lsb-base all 9.20160110ubuntu5 [13.2 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main amd64 multiarch-support amd64 2.23-1ubuntu1 [6822 B] Get:80 http://ftpmaster.internal/ubuntu yakkety/main amd64 libusb-0.1-4 amd64 2:0.1.12-30 [17.2 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main amd64 libprocps6 amd64 2:3.3.12-1ubuntu2 [31.2 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main amd64 procps amd64 2:3.3.12-1ubuntu2 [224 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main amd64 tzdata all 2016f-1 [169 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main amd64 dmsetup amd64 2:1.02.130-1ubuntu1 [75.3 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main amd64 libslang2 amd64 2.3.0-2.3ubuntu1 [414 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsqlite3-0 amd64 3.13.0-1 [478 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu7 [1121 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main amd64 xz-utils amd64 5.1.1alpha+20120614-2.1ubuntu1 [79.6 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgmp10 amd64 2:6.1.1+dfsg-1 [240 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main amd64 libp11-kit0 amd64 0.23.2-4 [105 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtasn1-6 amd64 4.8-1 [42.5 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgnutls30 amd64 3.4.14-1ubuntu1 [562 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgssapi-krb5-2 amd64 1.14.2+dfsg-1ubuntu1 [121 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkrb5-3 amd64 1.14.2+dfsg-1ubuntu1 [274 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkrb5support0 amd64 1.14.2+dfsg-1ubuntu1 [31.4 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety/main amd64 libk5crypto3 amd64 1.14.2+dfsg-1ubuntu1 [81.2 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main amd64 libkeyutils1 amd64 1.5.9-9ubuntu1 [9512 B] Get:98 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libroken18-heimdal amd64 1.7~git20160703+dfsg-1 [41.0 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libasn1-8-heimdal amd64 1.7~git20160703+dfsg-1 [174 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimbase1-heimdal amd64 1.7~git20160703+dfsg-1 [29.2 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhcrypto4-heimdal amd64 1.7~git20160703+dfsg-1 [88.0 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libwind0-heimdal amd64 1.7~git20160703+dfsg-1 [47.9 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhx509-5-heimdal amd64 1.7~git20160703+dfsg-1 [107 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libkrb5-26-heimdal amd64 1.7~git20160703+dfsg-1 [202 kB] Get:105 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimntlm0-heimdal amd64 1.7~git20160703+dfsg-1 [15.1 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgssapi3-heimdal amd64 1.7~git20160703+dfsg-1 [96.7 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [14.5 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [48.7 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu4 [161 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcurl3-gnutls amd64 7.50.1-1ubuntu1 [186 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt-transport-https amd64 1.3~pre3 [27.1 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpng16-16 amd64 1.6.23-1 [173 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main amd64 openssl amd64 1.0.2g-1ubuntu7 [491 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main amd64 binutils amd64 2.26.1-1ubuntu2 [2421 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main amd64 libisl15 amd64 0.17.1-1 [540 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpfr4 amd64 3.1.4-2 [190 kB] Get:118 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp-6 amd64 6.1.1-11ubuntu12 [31.5 MB] Get:119 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp amd64 4:6.1.1-1ubuntu2 [27.4 kB] Get:120 http://ftpmaster.internal/ubuntu yakkety/main amd64 libquadmath0 amd64 6.1.1-11ubuntu12 [132 kB] Get:121 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgomp1 amd64 6.1.1-11ubuntu12 [74.0 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety/main amd64 libitm1 amd64 6.1.1-11ubuntu12 [27.9 kB] Get:123 http://ftpmaster.internal/ubuntu yakkety/main amd64 libatomic1 amd64 6.1.1-11ubuntu12 [9156 B] Get:124 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasan2 amd64 5.4.1-1ubuntu2 [264 kB] Get:125 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblsan0 amd64 6.1.1-11ubuntu12 [117 kB] Get:126 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtsan0 amd64 6.1.1-11ubuntu12 [260 kB] Get:127 http://ftpmaster.internal/ubuntu yakkety/main amd64 libubsan0 amd64 6.1.1-11ubuntu12 [108 kB] Get:128 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcilkrts5 amd64 6.1.1-11ubuntu12 [40.9 kB] Get:129 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpx0 amd64 5.4.1-1ubuntu2 [9736 B] Get:130 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++-5 amd64 5.4.1-1ubuntu2 [8443 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5 amd64 5.4.1-1ubuntu2 [8565 kB] Get:132 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++-5-dev amd64 5.4.1-1ubuntu2 [1426 kB] Get:133 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc-5-dev amd64 5.4.1-1ubuntu2 [2230 kB] Get:134 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcc1-0 amd64 6.1.1-11ubuntu12 [31.1 kB] Get:135 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp-5 amd64 5.4.1-1ubuntu2 [7791 kB] Get:136 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5-base amd64 5.4.1-1ubuntu2 [17.2 kB] Get:137 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg-dev all 1.18.9ubuntu2 [641 kB] Get:138 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdpkg-perl all 1.18.9ubuntu2 [203 kB] Get:139 http://ftpmaster.internal/ubuntu yakkety/main amd64 make amd64 4.1-9 [154 kB] Get:140 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasan3 amd64 6.1.1-11ubuntu12 [308 kB] Get:141 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpx2 amd64 6.1.1-11ubuntu12 [11.5 kB] Get:142 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc-6-dev amd64 6.1.1-11ubuntu12 [2309 kB] Get:143 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-6 amd64 6.1.1-11ubuntu12 [31.1 MB] Get:144 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc amd64 4:6.1.1-1ubuntu2 [5170 B] Get:145 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++-6-dev amd64 6.1.1-11ubuntu12 [1413 kB] Get:146 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++-6 amd64 6.1.1-11ubuntu12 [33.7 MB] Get:147 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++ amd64 4:6.1.1-1ubuntu2 [1478 B] Get:148 http://ftpmaster.internal/ubuntu yakkety/main amd64 optipng amd64 0.7.6-1build1 [81.9 kB] Get:149 http://ftpmaster.internal/ubuntu yakkety/main amd64 pkgbinarymangler all 130 [43.2 kB] Get:150 http://ftpmaster.internal/ubuntu yakkety/main amd64 policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 169 MB in 1min 6s (2552 kB/s) (Reading database ... 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Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12168 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-14_amd64.deb ... Unpacking libgdbm3:amd64 (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu5_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-2ubuntu5) over (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12168 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.42_all.deb ... Unpacking init-system-helpers (1.42) over (1.29ubuntu1) ... Setting up init-system-helpers (1.42) ... (Reading database ... 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Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../mount_2.28-5ubuntu2_amd64.deb ... Unpacking mount (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up mount (2.28-5ubuntu2) ... (Reading database ... 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Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12174 files and directories currently installed.) Preparing to unpack .../debconf_1.5.59ubuntu1_all.deb ... Unpacking debconf (1.5.59ubuntu1) over (1.5.58ubuntu1) ... Setting up debconf (1.5.59ubuntu1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12174 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.10.95-4ubuntu3_amd64.deb ... Unpacking libapparmor1:amd64 (2.10.95-4ubuntu3) over (2.10.95-0ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libapparmor1:amd64 (2.10.95-4ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.25-1) over (1:2.24-12) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcap2:amd64 (1:2.25-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libudev1_231-1_amd64.deb ... Unpacking libudev1:amd64 (231-1) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libudev1:amd64 (231-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.130-1ubuntu1_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.130-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.130-1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.2-0ubuntu1_amd64.deb ... Unpacking libcryptsetup4:amd64 (2:1.7.2-0ubuntu1) over (2:1.6.6-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libcryptsetup4:amd64 (2:1.7.2-0ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-1_amd64.deb ... Unpacking libidn11:amd64 (1.33-1) over (1.32-3ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libidn11:amd64 (1.33-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libkmod2_22-1.1ubuntu1_amd64.deb ... Unpacking libkmod2:amd64 (22-1.1ubuntu1) over (22-1ubuntu4) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libkmod2:amd64 (22-1.1ubuntu1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12175 files and directories currently installed.) Preparing to unpack .../libmount1_2.28-5ubuntu2_amd64.deb ... Unpacking libmount1:amd64 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Setting up libmount1:amd64 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... (Reading database ... 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Processing triggers for libc-bin (2.23-1ubuntu1) ... Processing triggers for systemd (231-1) ... Setting up libc-dev-bin (2.23-1ubuntu1) ... Setting up linux-libc-dev:amd64 (4.4.0-34.53) ... Setting up libc6-dev:amd64 (2.23-1ubuntu1) ... Setting up bzip2 (1.0.6-8build1) ... Setting up perl-modules-5.22 (5.22.2-3) ... Setting up libgdbm3:amd64 (1.8.3-14) ... Setting up libperl5.22:amd64 (5.22.2-3) ... Setting up perl (5.22.2-3) ... Setting up sysvinit-utils (2.88dsf-59.8git1) ... Setting up libncurses5:amd64 (6.0+20160625-1ubuntu1) ... Setting up libprocps6:amd64 (2:3.3.12-1ubuntu2) ... Setting up procps (2:3.3.12-1ubuntu2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Setting up tzdata (2016f-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Aug 6 17:18:43 UTC 2016. Universal Time is now: Sat Aug 6 17:18:43 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up dmsetup (2:1.02.130-1ubuntu1) ... Setting up libslang2:amd64 (2.3.0-2.3ubuntu1) ... Setting up libsqlite3-0:amd64 (3.13.0-1) ... Setting up libssl1.0.0:amd64 (1.0.2g-1ubuntu7) ... Setting up xz-utils (5.1.1alpha+20120614-2.1ubuntu1) ... Setting up libgmp10:amd64 (2:6.1.1+dfsg-1) ... Setting up libp11-kit0:amd64 (0.23.2-4) ... Setting up libtasn1-6:amd64 (4.8-1) ... Setting up libgnutls30:amd64 (3.4.14-1ubuntu1) ... Setting up libkrb5support0:amd64 (1.14.2+dfsg-1ubuntu1) ... Setting up libk5crypto3:amd64 (1.14.2+dfsg-1ubuntu1) ... Setting up libkeyutils1:amd64 (1.5.9-9ubuntu1) ... Setting up libkrb5-3:amd64 (1.14.2+dfsg-1ubuntu1) ... Setting up libgssapi-krb5-2:amd64 (1.14.2+dfsg-1ubuntu1) ... Setting up libroken18-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libasn1-8-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libheimbase1-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libhcrypto4-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libwind0-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libkrb5-26-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libheimntlm0-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up libcurl3-gnutls:amd64 (7.50.1-1ubuntu1) ... Setting up apt-transport-https (1.3~pre3) ... Setting up libpng16-16:amd64 (1.6.23-1) ... Setting up openssl (1.0.2g-1ubuntu7) ... Setting up binutils (2.26.1-1ubuntu2) ... Setting up libisl15:amd64 (0.17.1-1) ... Setting up libmpfr4:amd64 (3.1.4-2) ... Setting up cpp-6 (6.1.1-11ubuntu12) ... Setting up cpp (4:6.1.1-1ubuntu2) ... Setting up libquadmath0:amd64 (6.1.1-11ubuntu12) ... Setting up libgomp1:amd64 (6.1.1-11ubuntu12) ... Setting up libitm1:amd64 (6.1.1-11ubuntu12) ... Setting up libatomic1:amd64 (6.1.1-11ubuntu12) ... Setting up gcc-5-base:amd64 (5.4.1-1ubuntu2) ... Setting up libasan2:amd64 (5.4.1-1ubuntu2) ... Setting up liblsan0:amd64 (6.1.1-11ubuntu12) ... Setting up libtsan0:amd64 (6.1.1-11ubuntu12) ... Setting up libubsan0:amd64 (6.1.1-11ubuntu12) ... Setting up libcilkrts5:amd64 (6.1.1-11ubuntu12) ... Setting up libmpx0:amd64 (5.4.1-1ubuntu2) ... Setting up cpp-5 (5.4.1-1ubuntu2) ... Setting up libcc1-0:amd64 (6.1.1-11ubuntu12) ... Setting up libgcc-5-dev:amd64 (5.4.1-1ubuntu2) ... Setting up gcc-5 (5.4.1-1ubuntu2) ... Setting up libstdc++-5-dev:amd64 (5.4.1-1ubuntu2) ... Setting up g++-5 (5.4.1-1ubuntu2) ... Setting up libdpkg-perl (1.18.9ubuntu2) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.9ubuntu2) ... Setting up libasan3:amd64 (6.1.1-11ubuntu12) ... Setting up libmpx2:amd64 (6.1.1-11ubuntu12) ... Setting up libgcc-6-dev:amd64 (6.1.1-11ubuntu12) ... Setting up gcc-6 (6.1.1-11ubuntu12) ... Setting up gcc (4:6.1.1-1ubuntu2) ... Setting up libstdc++-6-dev:amd64 (6.1.1-11ubuntu12) ... Setting up g++-6 (6.1.1-11ubuntu12) ... Setting up g++ (4:6.1.1-1ubuntu2) ... Setting up optipng (0.7.6-1build1) ... Setting up pkgbinarymangler (130) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... Processing triggers for systemd (231-1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-10573698', 'amd64', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=yakkety-proposed', '--purge=never', '--nolog', '-A', 'ncbi-blast+_2.4.0-3.dsc'] Initiating build PACKAGEBUILD-10573698 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-92-generic #139-Ubuntu SMP Tue Jun 28 20:42:26 UTC 2016 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lcy01-03.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ ncbi-blast+ 2.4.0-3 (amd64) 06 Aug 2016 17:18 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: ncbi-blast+ Version: 2.4.0-3 Source Version: 2.4.0-3 Distribution: yakkety-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-ItPhgZ' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-10573698/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── ncbi-blast+_2.4.0-3.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-ItPhgZ/resolver-hIOsls/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-ItPhgZ/resolver-hIOsls/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-ItPhgZ/resolver-hIOsls/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-ItPhgZ/resolver-hIOsls/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-ItPhgZ/resolver-hIOsls/apt_archive ./ Sources [208 B] Get:5 copy:/build/ncbi-blast+-ItPhgZ/resolver-hIOsls/apt_archive ./ Packages [527 B] Fetched 2854 B in 0s (270 kB/s) Reading package lists... W: The repository 'copy:/build/ncbi-blast+-ItPhgZ/resolver-hIOsls/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 libstdc++-5-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/build/ncbi-blast+-ItPhgZ/resolver-hIOsls/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13264 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-ItPhgZ/resolver-tHOeYE/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-ItPhgZ/resolver-tHOeYE/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-ItPhgZ/resolver-tHOeYE/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-ItPhgZ/resolver-tHOeYE/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-ItPhgZ/resolver-tHOeYE/apt_archive ./ Sources [465 B] Get:5 copy:/build/ncbi-blast+-ItPhgZ/resolver-tHOeYE/apt_archive ./ Packages [732 B] Fetched 3316 B in 0s (0 B/s) Reading package lists... W: The repository 'copy:/build/ncbi-blast+-ItPhgZ/resolver-tHOeYE/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install ncbi-blast+ build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-5 libprocps4 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost1.61-dev libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libboost1.61-doc libboost-atomic1.61-dev libboost-chrono1.61-dev libboost-context1.61-dev libboost-coroutine1.61-dev libboost-date-time1.61-dev libboost-exception1.61-dev libboost-filesystem1.61-dev libboost-graph1.61-dev libboost-graph-parallel1.61-dev libboost-iostreams1.61-dev libboost-locale1.61-dev libboost-log1.61-dev libboost-math1.61-dev libboost-mpi1.61-dev libboost-mpi-python1.61-dev libboost-program-options1.61-dev libboost-python1.61-dev libboost-random1.61-dev libboost-regex1.61-dev libboost-serialization1.61-dev libboost-signals1.61-dev libboost-system1.61-dev libboost-thread1.61-dev libboost-timer1.61-dev libboost-wave1.61-dev libboost1.61-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libboost-test-dev libboost-test1.61-dev libboost-test1.61.0 libboost1.61-dev libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 24.6 MB of archives. After this operation, 186 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-ncbi-blast+-dummy Authentication warning overridden. Get:1 copy:/build/ncbi-blast+-ItPhgZ/resolver-tHOeYE/apt_archive ./ sbuild-build-depends-ncbi-blast+-dummy 0.invalid.0 [974 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 groff-base amd64 1.22.3-8 [1142 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libpcrecpp0v5 amd64 2:8.39-1 [15.2 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmagic1 amd64 1:5.28-2ubuntu1 [234 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 file amd64 1:5.28-2ubuntu1 [21.7 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3 [6412 B] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 gettext-base amd64 0.19.7-2ubuntu3 [47.9 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 libglib2.0-0 amd64 2.49.2-2 [1123 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main amd64 libicu57 amd64 57.1-2 [7675 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-1 [697 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 time amd64 1.7-25.1 [26.2 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsigsegv2 amd64 2.10-5 [14.1 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main amd64 m4 amd64 1.4.17-5 [195 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 autoconf all 2.69-10 [321 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 autotools-dev all 20160430.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main amd64 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main amd64 gettext amd64 0.19.7-2ubuntu3 [1076 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 po-debconf all 1.0.19 [234 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libarchive-zip-perl all 1.58-1 [84.0 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-stripnondeterminism-perl all 0.022-1 [11.7 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-strip-nondeterminism all 0.022-1 [4856 B] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtool all 2.4.6-1 [194 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-autoreconf all 12 [15.8 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main amd64 debhelper all 9.20160709ubuntu1 [707 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 libboost1.61-dev amd64 1.61.0+dfsg-2.1 [6821 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-test1.61.0 amd64 1.61.0+dfsg-2.1 [204 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-test1.61-dev amd64 1.61.0+dfsg-2.1 [245 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libboost-test-dev amd64 1.61.0.2 [2898 B] Get:37 http://ftpmaster.internal/ubuntu yakkety/main amd64 libbz2-dev amd64 1.0.6-8build1 [29.3 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libpcre16-3 amd64 2:8.39-1 [149 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libpcre32-3 amd64 2:8.39-1 [139 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libpcre3-dev amd64 2:8.39-1 [535 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu5 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.6 MB in 2s (9782 kB/s) Selecting previously unselected package groff-base. 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Setting up libboost1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-1) ... Setting up libmagic1:amd64 (1:5.28-2ubuntu1) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3) ... Setting up libpcrecpp0v5:amd64 (2:8.39-1) ... Setting up libpcre32-3:amd64 (2:8.39-1) ... Setting up libpcre16-3:amd64 (2:8.39-1) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libboost-test1.61.0:amd64 (1.61.0+dfsg-2.1) ... Setting up autopoint (0.19.7-2ubuntu3) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Setting up libfile-stripnondeterminism-perl (0.022-1) ... Setting up libpcre3-dev:amd64 (2:8.39-1) ... Setting up libboost-test1.61-dev:amd64 (1.61.0+dfsg-2.1) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.28-2ubuntu1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-test-dev:amd64 (1.61.0.2) ... Setting up libtool (2.4.6-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up dh-autoreconf (12) ... Setting up debhelper (9.20160709ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.022-1) ... Processing triggers for libc-bin (2.23-1ubuntu1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-92-generic amd64 (x86_64) Toolchain package versions: binutils_2.26.1-1ubuntu2 dpkg-dev_1.18.9ubuntu2 g++-5_5.4.1-1ubuntu2 g++-6_6.1.1-11ubuntu12 gcc-5_5.4.1-1ubuntu2 gcc-6_6.1.1-11ubuntu12 libc6-dev_2.23-1ubuntu1 libstdc++-5-dev_5.4.1-1ubuntu2 libstdc++-6-dev_6.1.1-11ubuntu12 libstdc++6_6.1.1-11ubuntu12 linux-libc-dev_4.4.0-34.53 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~pre3 apt-transport-https_1.3~pre3 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu2 base-passwd_3.5.39 bash_4.3-15ubuntu1 binutils_2.26.1-1ubuntu2 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28-5ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-5_5.4.1-1ubuntu2 cpp-6_6.1.1-11ubuntu12 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_9.20160709ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.022-1 diffutils_1:3.3-3 dmsetup_2:1.02.130-1ubuntu1 dpkg_1.18.9ubuntu2 dpkg-dev_1.18.9ubuntu2 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.20.2-1ubuntu1 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 g++_4:6.1.1-1ubuntu2 g++-5_5.4.1-1ubuntu2 g++-6_6.1.1-11ubuntu12 gcc_4:6.1.1-1ubuntu2 gcc-5_5.4.1-1ubuntu2 gcc-5-base_5.4.1-1ubuntu2 gcc-6_6.1.1-11ubuntu12 gcc-6-base_6.1.1-11ubuntu12 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.18 init_1.42 init-system-helpers_1.42 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu3 libapt-pkg5.0_1.3~pre3 libarchive-zip-perl_1.58-1 libasan2_5.4.1-1ubuntu2 libasan3_6.1.1-11ubuntu12 libasn1-8-heimdal_1.7~git20160703+dfsg-1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-11ubuntu12 libattr1_1:2.4.47-2 libaudit-common_1:2.6.5-1ubuntu1 libaudit1_1:2.6.5-1ubuntu1 libblkid1_2.28-5ubuntu2 libboost-test-dev_1.61.0.2 libboost-test1.61-dev_1.61.0+dfsg-2.1 libboost-test1.61.0_1.61.0+dfsg-2.1 libboost1.61-dev_1.61.0+dfsg-2.1 libbz2-1.0_1.0.6-8build1 libbz2-dev_1.0.6-8build1 libc-bin_2.23-1ubuntu1 libc-dev-bin_2.23-1ubuntu1 libc6_2.23-1ubuntu1 libc6-dev_2.23-1ubuntu1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-11ubuntu12 libcilkrts5_6.1.1-11ubuntu12 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.130-1ubuntu1 libdpkg-perl_1.18.9ubuntu2 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.28-5ubuntu2 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.022-1 libgcc-5-dev_5.4.1-1ubuntu2 libgcc-6-dev_6.1.1-11ubuntu12 libgcc1_1:6.1.1-11ubuntu12 libgcrypt20_1.7.2-2 libgdbm3_1.8.3-14 libglib2.0-0_2.49.2-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.4.14-1ubuntu1 libgomp1_6.1.1-11ubuntu12 libgpg-error0_1.24-1 libgssapi-krb5-2_1.14.2+dfsg-1ubuntu1 libgssapi3-heimdal_1.7~git20160703+dfsg-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1 libheimbase1-heimdal_1.7~git20160703+dfsg-1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1 libicu57_57.1-2 libidn11_1.33-1 libisl15_0.17.1-1 libitm1_6.1.1-11ubuntu12 libk5crypto3_1.14.2+dfsg-1ubuntu1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1 libkrb5-3_1.14.2+dfsg-1ubuntu1 libkrb5support0_1.14.2+dfsg-1ubuntu1 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_6.1.1-11ubuntu12 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2.1ubuntu1 libmagic1_1:5.28-2ubuntu1 libmount1_2.28-5ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libmpx0_5.4.1-1ubuntu2 libmpx2_6.1.1-11ubuntu12 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-4 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre16-3_2:8.39-1 libpcre3_2:8.39-1 libpcre3-dev_2:8.39-1 libpcre32-3_2:8.39-1 libpcrecpp0v5_2:8.39-1 libperl5.22_5.22.2-3 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libpng16-16_1.6.23-1 libprocps4_2:3.3.10-4ubuntu2 libprocps6_2:3.3.12-1ubuntu2 libquadmath0_6.1.1-11ubuntu12 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28-5ubuntu2 libsqlite3-0_3.13.0-1 libss2_1.43.1-1 libssl1.0.0_1.0.2g-1ubuntu7 libstdc++-5-dev_5.4.1-1ubuntu2 libstdc++-6-dev_6.1.1-11ubuntu12 libstdc++6_6.1.1-11ubuntu12 libsystemd0_231-1 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libtsan0_6.1.1-11ubuntu12 libubsan0_6.1.1-11ubuntu12 libudev1_231-1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5ubuntu2 libwind0-heimdal_1.7~git20160703+dfsg-1 libxml2_2.9.4+dfsg1-1 linux-libc-dev_4.4.0-34.53 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu6 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.28-5ubuntu2 multiarch-support_2.23-1ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu7 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu6 patch_2.7.5-1 perl_5.22.2-3 perl-base_5.22.2-3 perl-modules-5.22_5.22.2-3 pkg-create-dbgsym_0.72 pkgbinarymangler_130 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_231-1 systemd-sysv_231-1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 time_1.7-25.1 tzdata_2016f-1 ubuntu-keyring_2016.05.13 util-linux_2.28-5ubuntu2 xz-utils_5.1.1alpha+20120614-2.1ubuntu1 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Sat Aug 6 00:54:58 2016 UTC using RSA key ID F14A64A2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.4.0-3.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.4.0 dpkg-source: info: unpacking ncbi-blast+_2.4.0.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.4.0-3.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying fix_version_extraction dpkg-source: info: applying support_recent_boost dpkg-source: info: applying support_x32 Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0 SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.4.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ncbi-blast+-2.4.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:94: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' debian/rules build dh build -Dc++ --with autotools_dev dh_testdir -O-Dc\+\+ dh_update_autotools_config -O-Dc\+\+ dh_autotools-dev_updateconfig -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... (cached) yes checking size of size_t... 8 checking for amq... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes checking how to run the C preprocessor... gcc -E checking whether cross-directory hard links work... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iostream.h usability... no checking iostream.h presence... no checking for iostream.h... no checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking strstrea.h usability... no checking strstrea.h presence... no checking for strstrea.h... no checking for inttypes.h... 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yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/sysinfo.h usability... yes checking sys/sysinfo.h presence... yes checking for sys/sysinfo.h... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking x86intrin.h usability... yes checking x86intrin.h presence... yes checking for x86intrin.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking 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valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking whether time.h and sys/time.h may both be included... yes checking for gethostbyname_r... 6 checking for gethostbyaddr_r... 8 checking for getservbyname_r... 6 checking for getpwuid_r... 5 checking for getlogin_r... yes checking for localtime_r... yes checking for pthread_setconcurrency... yes checking for pthread_atfork... yes checking return type of localtime_r... struct checking whether pthread mutexes are available... yes checking for vprintf... yes checking for _doprnt... no checking for alarm... yes checking for asprintf... yes checking for atoll... yes checking for basename... yes checking for euidaccess... yes checking for fseeko... yes checking for fstat... yes checking for getgrouplist... yes checking for getopt... yes checking for getpagesize... yes checking for getpass... yes checking for getpassphrase... no checking for getpwuid... yes checking for getrusage... yes checking for gettimeofday... yes checking for getuid... yes checking for lchown... yes checking for lutimes... yes checking for memrchr... yes checking for putenv... yes checking for readpassphrase... no checking for readv... yes checking for select... yes checking for setenv... yes checking for statfs... yes checking for statvfs... yes checking for strcasecmp... yes checking for strdup... yes checking for strlcat... no checking for strlcpy... no checking for strndup... yes checking for strsep... yes checking for strtok_r... yes checking for sysmp... no checking for timegm... yes checking for usleep... yes checking for utimes... yes checking for vasprintf... yes checking for vsnprintf... yes checking for writev... yes checking return type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether char is unsigned... no checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 8 checking for long double... yes checking size of long double... 16 checking for long long... yes checking size of long long... 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 8 checking for wchar_t... yes checking size of wchar_t... 4 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes checking for struct tm.__tm_zone... no checking whether function prototypes can use throw(...)... yes checking for obsolete string::compare() syntax... no checking whether the auto_ptr template class works... yes checking for min/max templates... yes checking whether new C++ streams have ios_base::... yes checking for ios(_base)::register_callback... yes checking for std::char_traits::... yes checking for SysV semaphores... yes checking for union semun... no checking which way the stack grows... down checking whether the preprocessor supports C99-style variadic macros... yes checking whether the preprocessor supports GNU-style variadic macros... yes checking syntax for marking deprecated functions... __attribute__((__deprecated__)) checking how to force inlining... inline __attribute__((always_inline)) checking whether the C compiler supports __attribute__((destructor))... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary checking whether the C compiler supports C99 restrict... __restrict__ checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for marking functions that never return... __attribute__((__noreturn__)) checking syntax for marking functions whose result should be checked... __attribute__((warn_unused_result)) checking syntax for declaring thread-local variables... __thread checking syntax for marking types as packed to save memory... __attribute__((__packed__)) checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -msse4.1... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -maes... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always... yes checking whether in-house NCBI resources are available... no checking for gethostbyname in -lnsl... yes checking for connect in -lsocket... no checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for socketpair... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... -lcrypt checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for nanosleep... yes checking for pthread_condattr_setclock... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libgmp... no checking for libgcrypt-config... no checking for libgcrypt... no checking for libhogweed... no checking for libgnutls-config... no checking for libgnutls... no checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.5... no checking for python2.6... no checking for python2.7... no checking for python3... no checking for perl... /usr/bin/perl checking for usable Perl libraries... no checking Boost version... 1_61 configure: WARNING: Untested Boost version; may prove incompatible. configure: WARNING: If so, please re-run this script with the flag --without-boost. checking for Boost library name tag... -gcc61-mt-1_61-64 (autodetected) checking for Boost.Regex... no checking for Boost.Spirit... yes checking for Boost.System... no checking for Boost.Filesystem... no checking for Boost.Iostreams... no checking for Boost.Program-Options... no checking for Boost.Test... included-only checking for Boost.Thread... no checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for wx-config... no /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/configure: 1: ./configure.lineno: : Permission denied checking for wxWidgets... no checking for FastCGI libraries... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories... no checking for ORBacus... no checking for ICU... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for libexslt... no checking for Xerces-C++... no checking for Xalan-C++... no checking for Zorba... no checking for libsqlite3... no checking for ncbi-vdb... no checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking for libjpeg... no checking for libpng... no checking for libtiff... no checking for libungif... no checking for libgif... no checking for libXpm... no checking for freetype-config... no checking for libftgl... no checking for libmagic... no checking for libmimetic... no checking for soapcpp2... no checking for wsdl2h... no checking for libgsoapssl++... no checking for libavrocpp... no checking for USC Cereal... no checking for libsasl2... no checking for libmongoclient... no checking for libgmock... no configure: looking for configurables below /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++... configure: ...done configure: updating cache config.cache configure: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/config.status config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/cgi/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/bitset/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/access/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biotree/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genesbyloc/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/macro/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbproj/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/omssa/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2/Makefile config.status: creating 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/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib/Makefile.precompile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib/Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/./Makefile config.status: creating /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib/ncbicfg.c is updated make[2]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' gcc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lm -lpthread -o run_with_lock /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f run_with_lock /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/Linux64/4.1.2/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib TMPL=corelib -w all make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)': /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp:2058:56: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, prompt.data(), prompt.length()); ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp:2087:50: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, thx.data(), thx.length()); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include ncbicfg.c -o ncbicfg.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:817:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbidiag.hpp:1803:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1767:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1830:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1855:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:947:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:3168:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:354:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc 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-I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/obj_store.cpp -o obj_store.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/version.cpp:456:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/version.cpp:456:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include 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-I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc 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-I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc 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-I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/guard.cpp -o guard.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/test_boost.cpp -o test_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/corelib/teamcity_messages.cpp -o teamcity_messages.o /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_boost.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_boost.o teamcity_messages.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_boost.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtest_boost.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libtest_boost.so /bin/ln -f .test_boost.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[2]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[2]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util TMPL=util -w all make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/random_gen.cpp -o random_gen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/utf8.cpp -o utf8.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/checksum.cpp -o checksum.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/bytesrc.cpp -o bytesrc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/strbuffer.cpp -o strbuffer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/itree.cpp -o itree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/smalldns.cpp -o smalldns.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/strsearch.cpp -o strsearch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/logrotate.cpp -o logrotate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/format_guess.cpp -o format_guess.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/ascii85.cpp -o ascii85.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/md5.cpp -o md5.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/file_obsolete.cpp -o file_obsolete.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/unicode.cpp -o unicode.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp: In static member function 'static void ncbi::CDictionaryUtil::Stem(const string&, std::__cxx11::string*)': /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include 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/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/sgml_entity.cpp -o sgml_entity.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/static_set.cpp -o static_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/transmissionrw.cpp -o transmissionrw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/miscmath.c -o miscmath.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/mutex_pool.cpp -o mutex_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/line_reader.cpp -o line_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/util_exception.cpp -o util_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/uttp.cpp -o uttp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/multi_writer.cpp -o multi_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/itransaction.cpp -o itransaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/thread_pool.cpp -o thread_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/scheduler.cpp -o scheduler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/distribution.cpp -o distribution.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/rangelist.cpp -o rangelist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/util_misc.cpp -o util_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/histogram_binning.cpp -o histogram_binning.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/table_printer.cpp -o table_printer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/retry_ctx.cpp -o retry_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/stream_source.cpp -o stream_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/file_manifest.cpp -o file_manifest.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxutil.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxutil.so /bin/ln -f .xutil.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xutil.dep make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[2]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[2]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[2]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[2]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxregexp.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxregexp.so /bin/ln -f .xregexp.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/xregexp TMPL=xregexp_template_tester -w all make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp_template_tester.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp_template_tester.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxregexp -lxncbi -lpcre /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxregexp_template_tester.so /bin/ln -f .xregexp_template_tester.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xregexp_template_tester.dep make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[2]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[2]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc 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-fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -ldl -lm -lpthread -o project_tree_builder /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f project_tree_builder /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GMP GCRYPT NETTLE GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB GMOCK PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory Alternatively, cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build' /usr/bin/make -w -j --jobserver-fds=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/html' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/html' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=connect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect TMPL=connect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_connect to make__connect_common per /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/.#lock-map. make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c: In function ‘CORE_SetLOGFILE_NAME_Ex’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c:147:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_util.c -o ncbi_util.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:77: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_DoLog’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:494:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(112, level, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:534:13: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(109, level, data, size, ^~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:567:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(113, level, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:575:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_InitAPI_’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:852:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Secure socket layer (SSL) has not" ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostname’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:164:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:997:13: note: in expansion of macro ‘CORE_LOG_ERRNO_EXX’ CORE_LOG_ERRNO_EXX(103, eLOG_Error, ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1006:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(104, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname_’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1139:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_getlocalhostaddress’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1179:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1205:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(155, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr_’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1336:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1370:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘x_TryLowerSockFileno’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1479:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(111, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Select_’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1604:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1733:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Poll_’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:1877:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2022:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_IsConnected_’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2596:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2606:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2641:25: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Recv’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2797:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Read_’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:2977:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Send’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3331:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_WritePending’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3480:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(12, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Shutdown’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3652:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3689:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3753:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Close_’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3817:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3833:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3863:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:3922:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Connect_’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4022:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(131, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4039:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(142, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4058:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4084:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(23, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4128:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(24, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4143:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4154:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4174:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(129, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4215:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(25, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4259:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(26, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Create’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4351:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateOnTop’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4404:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(47, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4427:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(148, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4465:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(48, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4506:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(50, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4520:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4583:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(132, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4605:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4616:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4636:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c: In function ‘ConnNetInfo_Log’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:114:54: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1297:9: note: in expansion of macro ‘LOG_WRITE’ LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4651:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_ConnectEx’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateListening’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1515:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1528:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1556:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1567:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4703:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(144, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1613:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1626:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1665:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_Connect’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1698:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(9, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4737:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(34, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c:1738:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4783:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(35, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4838:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4859:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(150, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4910:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(38, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4929:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(37, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4980:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(110, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:4994:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(115, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_Accept’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5041:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(39, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5097:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(40, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5156:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(41, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5215:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5226:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5237:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5257:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_CloseListening’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5302:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(44, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5331:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(45, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_RecvMsg’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5419:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5467:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘s_SendMsg’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5502:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5518:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(88, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5527:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(89, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5577:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(90, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5623:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Create’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5666:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5676:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5688:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5698:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5717:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(116, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Close’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5779:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(117, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘LSOCK_GetOSHandleEx’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:5990:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(46, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Reconnect’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6178:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(52, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6188:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(53, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6200:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(51, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Shutdown’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6230:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(54, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6237:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(55, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6245:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Wait’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6374:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(56, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6402:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(57, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6416:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(58, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6430:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(59, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6439:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(60, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6449:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(61, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6459:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(62, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetTimeout’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6552:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(63, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetTimeout’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6593:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(64, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Read’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6635:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(65, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6645:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(66, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_ReadLine’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6676:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(125, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Pushback’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6752:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(67, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Write’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6804:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(68, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6831:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(69, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6841:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(70, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Abort’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6860:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(71, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:6867:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(72, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetOSHandleEx’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7018:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(73, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetCork’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7081:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(158, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7088:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(159, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7101:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_DisableOSSendDelay’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7118:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(156, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7125:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(157, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7138:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_CreateEx’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7179:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(76, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7218:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(77, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7268:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(130, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Bind’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7298:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(79, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7305:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(78, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7323:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7339:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(114, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Connect’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7368:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(82, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7375:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(81, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7394:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(83, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7407:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(84, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7436:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(85, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WaitMsg’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7464:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(96, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7471:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(95, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_RecvMsg’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7510:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(93, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7517:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(92, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SendMsg’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7554:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(87, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7561:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(86, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WipeMsg’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7593:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(98, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7600:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(97, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7620:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(99, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SetBroadcast’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7638:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(101, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7645:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(100, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7665:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(102, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetReuseAddress’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:7827:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetupSSL’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c:8218:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Cannot reset SSL while it is in use"); ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘x_ReInit’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:272:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:301:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, Close, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:305:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, ReInit, eLOG_Error, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘s_Open’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:381:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_CreateEx’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:423:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(2, Create, eLOG_Error, "NULL connector"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReInit’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:444:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:444:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetType’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:452:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:452:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Description’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:461:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:461:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetPosition’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:473:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:473:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:486:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetTimeout’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:502:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:502:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:542:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetTimeout’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:557:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:557:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:565:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(11, GetTimeout, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:580:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Wait’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:596:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:596:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:640:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Write’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:661:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:701:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(17, Write, level, "Unable to write data"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Write’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:743:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:743:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Pushback’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:778:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:778:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Flush’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:798:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:798:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:812:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(21, Flush, eLOG_Warning, "Failed to flush"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Read’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:837:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:876:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(32, Read, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:902:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(23, Read, level, "Unable to read data"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Read’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:953:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:953:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReadLine’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1002:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1002:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1050:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(35, ReadLine, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Status’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1069:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1069:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Close’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1108:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1108:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetCallback’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1128:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1128:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1134:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetSOCK’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1155:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c:1155:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Remove’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:42:3: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:64:13: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(34, eLOG_Error, ^~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Add’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:42:3: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(33, eLOG_Error, ^~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c:171:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(163, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Adjust’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:367:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:382:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:408:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:423:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:433:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:457:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Connect’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:560:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:700:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(20, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ConnectAndSend’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:911:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘x_ReadChunkHead’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1042:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadData’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1113:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(24, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1137:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(25, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadHeader’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1211:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(7, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1248:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, level, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1310:9: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1327:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1346:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1394:25: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1553:21: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1569:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(11, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1627:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1632:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1643:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1651:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(14, eLOG_Note, s, n, ^~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1660:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Read’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1831:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c:1876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Warning, ^~~~~~~~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:115: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Create’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:243:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:264:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_AttachFast’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:288:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:297:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Attach’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:326:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(34, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Find’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:422:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Alloc’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:630:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:636:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:683:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Free’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:805:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:811:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:824:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:832:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:844:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(14, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_FreeFast’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:856:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:862:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:887:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:894:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Trim’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:916:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(30, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:951:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(31, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:978:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(32, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Walk’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1000:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(28, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1014:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(26, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1017:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(27, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1029:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1116:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1131:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1149:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1160:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(24, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Walk’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1176:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Destroy’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c:1278:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(33, eLOG_Error, ^~~~~~~~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werromake[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: ‘s_CompoHeapIsValid’ defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_heap.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/composition_adjustment.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c: In function ‘x_ServiceName’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:84:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:93:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c: In function ‘x_Open’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c:319:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c: In function ‘s_Resolve’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c:198:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c:31:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_OpenDispatcher’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:94:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_ParseHeader’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:169:49: warning: format ‘%n’ expects argument of type ‘int *’, but argument 7 has type ‘unsigned int *’ [-Wformat=] if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:170:51: warning: format ‘%n’ expects argument of type ‘int *’, but argument 5 has type ‘unsigned int *’ [-Wformat=] || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_Open’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:817:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:843:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c:1033:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c: In function ‘s_SendRcpt’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:389:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(3, "Recipient address is too long"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:392:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:400:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(4, write_error); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:403:13: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(5, proto_error, buf); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c: In function ‘CORE_SendMailEx’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:455:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(6, "Invalid magic cookie"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:460:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(7, "At least one message recipient must be specified"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:470:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:477:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:482:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(10, "Unable to get local host name"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:487:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(11, "Write error in HELO command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:495:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(13, "Write error in MAIL command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:498:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:519:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(15, "Write error in DATA command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:552:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(32, "Write error in sending Date"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:559:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(33, "Write error in sending From"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:567:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(17, "Write error in sending Subject"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:574:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(18, "Write error in sending To"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:581:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(19, "Write error in sending Cc"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:585:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:596:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(20, "Write error in sending mailer information"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:623:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(21, "Write error while sending custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:626:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(22, "Header write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:628:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(23, "Write error while finalizing custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:636:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(24, "Write error in message body delimiter"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:662:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(25, "Write error while sending message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:665:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(26, "Body write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:668:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(27, "Write error while finalizing message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:671:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(28, "Write error while finalizing message"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:676:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:679:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(30, "Write error in QUIT command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c:681:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c:31:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ r=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:50: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPCloseData’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:199:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:204:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:218:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:222:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:236:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPReply’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:283:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPCommandEx’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:359:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPLogin’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:592:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c:86:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPPassive’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:950:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPXfer’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1110:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPPollCntl’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1633:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1899:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Write’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:1974:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_CreateConnector’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connector.c:2284:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:205:1: warning: ‘s_DistinctAlignmentsLength’ defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:190:1: warning: ‘s_AlignmentsAreSorted’ defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_ftp_connecmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/smith_waterman.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libcomposition_adjustment.so /bin/ln -f .composition_adjustment.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringConcat’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:429:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "g_LBOS_StringConcat: No RAM. Returning NULL."); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringNConcat’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:517:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_RegGet’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:542:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "g_LBOS_RegGet: No RAM. Returning NULL."); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:555:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "g_LBOS_RegGet: Buffer " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_ComposeLBOSAddress’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:588:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ComposeLBOSAddress: " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_GetLBOSAddressEx’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:696:5: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Trace, "Getting LBOS addresses..."); ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/conne/usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=3,4 all ct/ncbi_lbos.c:710:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Use of custom LBOS address was " ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:717:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Did not manage to copy custom " ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:725:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS using " ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:735:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS in " ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadRole’: /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:778:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("s_LBOS_ReadRole: " ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:786:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadRole: " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/.#lock-map. /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:811:25: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadDomain’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:866:17: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("s_LBOS_ReadDomain: " ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:874:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadDomain: " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:888:17: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:921:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("LBOS mapper: " ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:929:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadLBOSResolve: " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:943:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:954:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (s_LBOS_Lbosresolver == NULL) ^~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:957:13: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ s_LBOS_Lbosresolver = strdup(str + 7); ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConnectURL’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:993:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Parsing URL \"%s\"", url)); ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:995:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot parse URL"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:998:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Creating HTTP%s connector", ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1005:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1008:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Note, "Creating connection"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1010:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create connection"); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_UrlReadAll’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1068:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1080:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1125:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1139:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ResolveIPPort’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1175:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1235:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_FillCandidates’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1338:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1344:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Ho servers of \"%s\" found by LBOS", ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1349:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1362:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckAnnounceArgs’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1392:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1399:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1414:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, incorrect port."); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1418:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1423:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1428:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckDeannounceArgs’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1442:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1448:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1453:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1458:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_PerformRequest’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1496:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Replace0000WithIP’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1550:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1559:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1566:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConstructData’: Waiting for /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect/make__connect_common.lock/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1728:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Initialize’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1799:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1801:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1810:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Note, "LBOS is turned ON in config."); ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1812:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1828:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ParseHeader’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1876:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Reset’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:1939:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘SERV_LBOS_Open’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2068:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2076:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2091:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2106:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2115:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Announce’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2207:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2240:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2248:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2254:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2264:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2274:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_AnnounceFromRegistry’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2393:53: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=] if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Deannounce’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2445:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_DeannounceAll’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c:2580:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "RAM error. Cancelling deannounce all."); ^~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtables.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libtables.so /bin/ln -f .tables.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=3,4 all tor.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /bin/rm -f libconnect.so .libconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lnsl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libconnect.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libconnect.so /bin/ln -f .connect.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.connect.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp: In member function ‘void ncbi::CGeneInfo::ToString(std::__cxx11::string&, bool, const string&, unsigned int) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:182:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetDescription(), " ", strDescrWords); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libcreaders.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libcreaders.so /bin/ln -f .creaders.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.creaders.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp: In static member function ‘static void ncbi::CGeneFileUtils::ReadGeneInfo(ncbi::CNcbiIfstream&, int, ncbi::CRef&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:166:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strBuf, "\t", strItems); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ . Acquired /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect/make__connect_common.lock for PID 23107 (make__connect_common) make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgene_info.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgene_info.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libgene_info.so /bin/ln -f .gene_info.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html TMPL=html -w -j --jobserver-fds=3,4 all cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libsequtil.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libsequtil.so /bin/ln -f .sequtil.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial TMPL=serial -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/typeinfo.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gene_info_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objectinfo.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objectiter.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectio.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objectio.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/typeref.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/comake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/typemap.cpp -o typemap.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/stdtypes.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthreadmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/commentdiag.cpp -o commentdiag.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/enumerated.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxhtml.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxhtml.so /bin/ln -f .xhtml.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/html' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/html' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/.#lock-map. In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/ptrinfo.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/autoptrinfo.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/continfo.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ nnect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxncbi -lnsl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxconnect.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxconnect.so /bin/ln -f .xconnect.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_TwoHit’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:489:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:496:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_OneHit’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:756:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:763:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ At top level: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_diagnostics.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c: In function ‘BLAST_PreliminarySearchEngine’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:1263:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:1389:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:1467:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ At top level: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c:57:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_extend.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_filter.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_gapalign.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/stltypes.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hits.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_itree.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_kappa.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_lookup.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aalookup.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c: In function ‘BlastChooseProteinScanSubject’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:572:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:575:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:580:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; ^ At top level: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nalookup.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/memberlist.cpp -o memberlist.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaChooseScanSubject’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:296:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:298:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_SmallNaChooseScanSubject’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1325:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1332:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1339:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1341:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1348:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1350:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1352:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1359:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1365:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1369:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_1Mod4; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1373:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_2Mod4; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:1377:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_MBChooseScanSubject’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2583:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2585:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2587:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2589:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2597:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2599:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2601:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2606:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2608:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2610:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2612:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2618:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2621:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2624:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2627:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2638:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘BlastChooseNucleotideScanSubjectAny’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2657:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2660:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:2662:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ At top level: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_message.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_options.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/classinfob.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘s_IsSeedMasked’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:489:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastNaWordFinder’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1605:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1606:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1618:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1619:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1626:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1627:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1640:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘MB_IndexedWordFinder’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1706:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1708:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastChooseNaExtend’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1778:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_MBLookup; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1782:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1785:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1787:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1791:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1795:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1801:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtend; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1805:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_NaLookup; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1809:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1812:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:1814:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ At top level: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi_priv.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seg.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seqsrc.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_setup.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_stat.c:52:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/member.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2313:19: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ mz_uint16 c01 = TDEFL_READ_UNALIGNED_WORD(&d->m_dict[pos + match_len - 1]), s01 = TDEFL_READ_UNALIGNED_WORD(s); ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2324:13: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break; ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2325:7: note: in expansion of macro ‘TDEFL_PROBE’ TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE; ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2324:13: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break; ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2325:20: note: in expansion of macro ‘TDEFL_PROBE’ TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE; ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2324:13: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break; ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2325:33: note: in expansion of macro ‘TDEFL_PROBE’ TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE; ^~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2327:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; ^~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2327:23: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2307:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/miniz/miniz.c:2337:13: note: in expansion of macro ‘TDEFL_READ_UNALIGNED_WORD’ c01 = TDEFL_READ_UNALIGNED_WORD(&d->m_dict[pos + match_len - 1]); ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback.c:52:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c: In function ‘BlastProgram2Number’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c:309:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("phiblastp", program) == 0) ^~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c:312:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ return 0; ^~~~~~ At top level: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gapinfo.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/greedy_align.c:38:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_collector.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_besthit.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_culling.c:43:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c: In function ‘s_FwdCompareHSPs’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c:138:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c:141:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (h1->query.offset < h2->query.offset) ^~ At top level: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/classinfo.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_util.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_wrap.c:39:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/matrix_freq_ratios.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_std.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_Fapi/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxcompress.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxcompress.so /bin/ln -f .xcompress.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_math.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_encoding.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ ILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/pattern.c:58:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_extend.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_gapalign.c:57:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_lookup.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_parameters.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_posit.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_program.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/pattern.c -o pattern.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_program.c -o blast_program.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_query_info.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_tune.c:37:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_sw.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_dynarray.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/split_query.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gencode_singleton.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback_mt_priv.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream_mt_utils.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/variant.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast.so /bin/ln -f .blast.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/choice.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/choiceptr.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/choiceptr.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/aliasinfo.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong - -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/member.cpp -o member.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/choice.cpp -o choice.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/choiceptr.cpp -o choiceptr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/aliasinfo.cpp -o aliasinfo.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistr.cpp:46: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostr.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objcopy.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objcopy.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/iterator.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c+Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxcgi.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxcgi.so /bin/ln -f .xcgi.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/serial.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/delaybuf.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/pack_string.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/pack_string.cpp:32: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ +/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistr.cpp -o objistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostr.cpp -o objostr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/serial.cpp -o serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/delaybuf.cpp -o delaybuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/pack_string.cpp -o pack_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objhook.cpp -o objhook.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/exception.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objhook.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostrasn.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostrasn.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistrasn.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostrasnb.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostrasnb.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistrasnb.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistrasnb.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostrxml.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostrxml.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostrxml.cpp -o objostrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistrxml.cpp -o objistrxml.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistrxml.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistrxml.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostrjson.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostrjson.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistrjson.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistrjson.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/serialobject.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/rpcbase_impl.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/rpcbase.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objostrjson.cpp -o objostrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/objistrjson.cpp -o objistrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/pathhook.cpp -o pathhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxser.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxser.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxser.so /bin/ln -f .xser.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool TMPL=datatool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/statictype.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/datatool.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/enumtype.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/reftype.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/unitype.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -o datatool /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f datatool /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh general all cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh biblio all make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh pub all make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh medline all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqcode all /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blastdb all make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh genome_collection all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqset all /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh scoremat all make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh gencoll_client all Waiting for /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/make_asn.lock/usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqedit all /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seqsplit all make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' status=0 ; \ MAKE="/usr/bin/make -w -j --jobserver-fds=3,4"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../$x ; \ (cd $d && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqblock' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqblock' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub object/usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh submit all cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh variation all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blast all /usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1 && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh id1 all s/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqres' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm/usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqtable' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast' /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh seq all /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2 && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh id2 all make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1 && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh taxon1 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2' /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blastxml all make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2 && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh blastxml2 all /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2 && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh entrez2 all make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh gbseq all make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh medlars all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' /usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh pubmed all make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh mla all make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3 && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh taxon3 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla' /usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh valid all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr && /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/new_module.sh valerr all make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general TMPL=general -w -j --jobserver-fds=3,4 all /usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=3,4 all /usr/bin/make[4] (Makefile.valerr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Date_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:4:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Dbtag.cpp: In member function ‘std::__cxx11::string ncbi::objects::CDbtag::GetUrl(const string&) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Dbtag.cpp:740:69: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( taxname, " ", taxname_parts, NStr::eMergeDelims ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:9:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp: In member function ‘ncbi::CConstRef ncbi::objects::CUser_field::GetFieldRef(const string&, const string&, ncbi::NStr::ECase) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp:231:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:9:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp: In member function ‘ncbi::CRef ncbi::objects::CUser_field::SetFieldRef(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp:347:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:9:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp: In member function ‘bool ncbi::objects::CUser_field::DeleteField(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_field.cpp:406:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:10:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp: In member function ‘ncbi::CConstRef ncbi::objects::CUser_object::GetFieldRef(const string&, const string&, ncbi::NStr::ECase) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp:85:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:10:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp: In member function ‘ncbi::CRef ncbi::objects::CUser_object::SetFieldRef(const string&, const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/User_object.cpp:161:33: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, delim, toks); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset' . Acquired /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/make_asn.lock for PID 24990 (make_asn) /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqtable' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.14.0 make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1' File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqcode.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqcode.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqcode.so /bin/ln -f .seqcode.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastxml2/BlastOutput2_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastxml2/BlastOutput2.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/BlastOutput2.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/uoconv.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/uoconv.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ DATATOOL=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++ -opm /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.14.0 make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastxml.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastxml.so /bin/ln -f .blastxml.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/gbseq/GBAltSeqData_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/gbseq/GBAltSeqData.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq/GBAltSeqData.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgeneral.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libgeneral.so /bin/ln -f .general.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.so .libblastxml2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastxml2.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastxml2.so /bin/ln -f .blastxml2.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:5:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/Auth_list.cpp: In member function ‘void ncbi::objects::CAuth_list::ConvertMlToStandard()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/Auth_list.cpp:226:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*it, " ", tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:5:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/Auth_list.cpp:242:49: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(init, "", letters); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:2:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp: In member function ‘ncbi::objects::CComment_rule::TErrorList ncbi::objects::CComment_rule::IsValid(const ncbi::objects::CUser_object&) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp:290:28: warning: unused variable ‘sev’ [-Wunused-variable] CField_rule::TSeverity sev; ^~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:3:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_set.cpp: In static member function ‘static std::__cxx11::list > ncbi::objects::CComment_set::GetKeywords(const ncbi::objects::CUser_object&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_set.cpp:181:48: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(kywd, ";", keywords); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/static_set.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule.cpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libentrez2.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libentrez2.so /bin/ln -f .entrez2.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.so .libgbseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgbseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbseq__.o gbseq___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgbseq.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libgbseq.so /bin/ln -f .gbseq.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/Affil_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/Comment_rule_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/valid___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.so .libvalid.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalid.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valid__.o valid___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libvalid.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libvalid.so /bin/ln -f .valid.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.valid.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2cli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lentrez2 -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libentrez2cli.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libentrez2cli.so /bin/ln -f .entrez2cli.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/citation_base.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libbiblio.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lgeneral -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libbiblio.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libbiblio.so /bin/ln -f .biblio.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/medline/DocRef_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/medline/DocRef.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/DocRef.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/medlars/Medlars_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/medlars/Medlars_entry.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars/Medlars_entry.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/DocRef_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.so .libmedlars.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedlars.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medlars__.o medlars___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmedlars.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libmedlars.so /bin/ln -f .medlars.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.medlars.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedline.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmedline.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libmedline.so /bin/ln -f .medline.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/pubmed/Pubmed_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/pubmed/Pubmed_entry.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed/Pubmed_entry.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/pub/Pub_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/pub/Pub.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/Pub.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/Pub_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.so .libpubmed.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpubmed.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pubmed__.o pubmed___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libpubmed.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libpubmed.so /bin/ln -f .pubmed.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.pubmed.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpub.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libpub.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libpub.so /bin/ln -f .pub.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/mla/Error_val_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/mla/Error_val.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/Error_val.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/mla__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/Error_val_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/mla___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp:15:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/Linkage_evidence.cpp: In static member function ‘static bool ncbi::objects::CLinkage_evidence::GetLinkageEvidence(ncbi::objects::CLinkage_evidence::TLinkage_evidence&, const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/Linkage_evidence.cpp:64:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( linkage_evidence, ";", linkage_evidence_vec ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: ‘void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: ‘void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.so .libmla.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmla.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla__.o mla___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmla.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libmla.so /bin/ln -f .mla.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.mla.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BioSource.cpp: In function ‘void ncbi::objects::s_GetWordListFromText(std::__cxx11::string&, ncbi::objects::TWordList&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BioSource.cpp:1335:59: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, " ", word_list, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp: In static member function ‘static const TLegalRepeatTypeSet& ncbi::objects::CGb_qual::GetSetOfLegalRepeatTypes()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] }; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:195:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp: In static member function ‘static bool ncbi::objects::CGb_qual::IsValidRptTypeValue(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:213:39: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(val, ",", rpt_types); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp: In static member function ‘static const TLegalPseudogeneSet& ncbi::objects::CGb_qual::GetSetOfLegalPseudogenes()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] }; ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:243:5: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:10:0, from seqloc__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Seq_id.cpp: In static member function ‘static ncbi::SIZE_TYPE ncbi::objects::CSeq_id::ParseIDs(ncbi::objects::CBioseq_Base::TId&, const ncbi::CTempString&, ncbi::objects::CSeq_id::TParseFlags)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Seq_id.cpp:1859:60: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split(ss, "|", fasta_pieces, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In function ‘void ncbi::objects::s_ProcessInstitutionCollectionCodeLine(const ncbi::CTempString&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp:206:38: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:25:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::COrgMod::FixStrain(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgMod.cpp:659:38: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strain, ";", words); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:26:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp: In member function ‘void ncbi::objects::COrgName::x_ResetAttribFlag(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp:133:40: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split( attr, s_flagDelim, lVals ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:26:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp: In member function ‘bool ncbi::objects::COrgName::x_GetAttribFlag(const string&) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/OrgName.cpp:154:40: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split( attr, s_flagDelim, lVals ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function ‘static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function ‘ncbi::CTempString ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:47:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp: In member function ‘void ncbi::objects::CSeq_feat::RemoveExceptText(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp:355:60: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split(GetExcept_text(), ",", list_of_except_texts); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2527:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:47:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp: In member function ‘ncbi::AutoPtr > > > ncbi::objects::CSeq_feat::GetTempExceptionTextSet() const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/Seq_feat.cpp:418:27: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)’ is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2686:28: note: declared here vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static bool ncbi::objects::CSubSource::IsCollectionDateAfterTime(const string&, time_t, bool&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:351:48: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(collection_date, "/", pieces); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static void ncbi::objects::CSubSource::IsCorrectDateFormat(const string&, bool&, bool&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:404:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(date_string, "/", pieces); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:453:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(date_string, "/", pieces); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:457:14: warning: unused variable ‘first_bad’ [-Wunused-variable] bool first_bad = false; ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:458:14: warning: unused variable ‘first_future’ [-Wunused-variable] bool first_future = false; ^~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:459:14: warning: unused variable ‘second_bad’ [-Wunused-variable] bool second_bad = false; ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:460:14: warning: unused variable ‘second_future’ [-Wunused-variable] bool second_future = false; ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::GetCollectionDateProblem(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:509:10: warning: unused variable ‘bad_format’ [-Wunused-variable] bool bad_format = false; ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:510:10: warning: unused variable ‘in_future’ [-Wunused-variable] bool in_future = false; ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::vector > ncbi::objects::CSubSource::x_GetDateTokens(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:739:12: warning: unused variable ‘i’ [-Wunused-variable] size_t i; ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static void ncbi::objects::CSubSource::IsCorrectLatLonFormat(std::__cxx11::string, bool&, bool&, bool&, bool&, double&, double&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:1153:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(lat_lon, " ", pieces); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::ValidateLatLonCountry(const string&, std::__cxx11::string&, bool, ncbi::objects::CSubSource::ELatLonCountryErr&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:1985:67: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(lat_lon, ",", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static bool ncbi::objects::CSubSource::IsValidSexQualifierValue(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:2336:35: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str," ,/",words); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CSubSource::FixSexQualifierValue(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:2374:35: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str," ,/",words); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function ‘void ncbi::objects::s_ProcessCellLineLine(const ncbi::CTempString&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:2560:38: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::__cxx11::string ncbi::objects::CCountries::CapitalizeFirstLetterOfEveryWord(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3391:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(phrase," \t\r\n",words); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static std::vector > ncbi::objects::CCountries::x_Tokenize(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3523:37: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(val,",:()",tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function ‘bool ncbi::objects::s_ContainsWholeWord(const string&, const string&, ncbi::NStr::ECase)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3554:74: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(test, word, 0, NPOS, NStr::eFirst, case_sense); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:3560:77: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(test, word, pos + 1, NPOS, NStr::eFirst, case_sense); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48:0, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp: In member function ‘void ncbi::objects::CLatLonCountryMap::x_InitFromDefaultList(const char* const*, int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/SubSource.cpp:4637:47: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqres__.cpp -o seqres__.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqtable/BVector_data_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqtable/BVector_data.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/Align_def_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include seqtable___.cpp -o seqtable___.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_data_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_data.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seqport_util.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seqport_util.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_tree.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_tree.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_handle.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_mapper.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_loc_mapper_base.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp:1488:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ~~~~~~^~~~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=3,4 all -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/mla/mla_client_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/mla/mla_client.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seqlocinfo.cpp:32: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/sofa_type.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/sofa_map.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client_.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_loc_from_string.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_from_string.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.so .libmlacli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmlacli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla_client.o mla_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lmla -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libmlacli.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libmlacli.so /bin/ln -f .mlacli.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseq.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libseq.so /bin/ln -f .seq.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation/variation__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/Bioseq_set.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation/variation___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastdb.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastdb.so /bin/ln -f .blastdb.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/gb_release_file.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/gb_release_file.cpp:32: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.so .libvariation.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvariation.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC variation__.o variation___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libvariation.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libvariation.so /bin/ln -f .variation.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3 TMPL=taxon3 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqset.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqset.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqset.so /bin/ln -f .seqset.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgenome_collection.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libgenome_collection.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libgenome_collection.so /bin/ln -f .genome_collection.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/taxon3.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libscoremat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libscoremat.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libscoremat.so /bin/ln -f .scoremat.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon3/cached_taxon3.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/cached_taxon3.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon3/cached_taxon3.cpp -o cached_taxon3.o /bin/rm -f libtaxon3.so .libtaxon3.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon3.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon3__.o taxon3___.o taxon3.o cached_taxon3.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtaxon3.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libtaxon3.so /bin/ln -f .taxon3.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.taxon3.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqedit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqedit.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqedit.so /bin/ln -f .seqedit.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/cache.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/submit/Contact_info_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/submit/Contact_info.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit/Contact_info.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit/submit__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/blast__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqsplit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqsplit.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqsplit.so /bin/ln -f .seqsplit.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit/Contact_info_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit/submit___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1/id1__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/blast___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsubmit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libsubmit.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libsubmit.so /bin/ln -f .submit.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1/id1___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2/id2__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/utils.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libid1.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libid1.so /bin/ln -f .id1.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valerr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr TMPL=valerr -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/valerr/ValidErrItem.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr/ValidErrItem.cpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr__.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2/id2___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/ctreecont.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr/ValidErrItem_.cpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr___.cpp:2: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libtaxon1.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libtaxon1.so /bin/ln -f .taxon1.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.so .libvalerr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalerr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valerr__.o valerr___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libvalerr.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libvalerr.so /bin/ln -f .valerr.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.valerr.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_table_setters.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libid2.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libid2.so /bin/ln -f .id2.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/read_util.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/names.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/names.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp: In constructor ‘ncbi::objects::CSeqTableSetExt::CSeqTableSetExt(const ncbi::CTempString&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp:184:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(name, ".", subfields); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/objmgr_exception.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/format_guess_ex.cpp:45: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_info.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxnetblast.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxnetblast.so /bin/ln -f .xnetblast.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp: In function ‘ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:58:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:74:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:123:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", fields); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_read.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/blastclient_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/blastclient.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp: In member function ‘int ncbi::CAgpRow::FromString(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:303:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line.substr(0, pcomment), "\t", cols); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:316:55: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line.substr(0, pos), "\t", cols); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:321:43: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] else NStr::Tokenize(line, "\t", cols); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp: In member function ‘int ncbi::CAgpRow::ParseGapCols(bool)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:646:80: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetLinkageEvidence(), ";", raw_linkage_evidences); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp: In static member function ‘static void ncbi::CAgpErrEx::PrintLine(ncbi::CNcbiOstream&, const string&, int, const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:1218:63: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE posSpace = NStr::Find(line, " ", 0, posComment); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:1220:68: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE posTab = NStr::Find(line, "\t", 0, posComment); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:1224:64: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] posTab = NStr::Find(line, " ", posTab+1, posComment); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_util.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient_.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_annot_info.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_info.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxnetblastcli.so /bin/ln -f .xnetblastcli.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_validate_reader.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o /bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqalign_util.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqalign_util.a /bin/ln -f .seqalign_util.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.seqalign_util.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blast_app_util.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blast_app_util.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function ‘Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:257:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] Uint4 end_value = *((int *) & end_bytes); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/aln_reader.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/aln_reader.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/table_field.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blasmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o /bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast_unit_test_util.a /bin/ln -f .blast_unit_test_util.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.blast_unit_test_util.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/bed_reader.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp: In member function ‘std::vector > ncbi::CBlastServices::GetDatabaseInfoLegacy(const string&, bool, bool*, std::vector >*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:442:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(dbname, " \n\t", dbs); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp: In member function ‘std::vector > ncbi::CBlastServices::GetDatabaseInfo(const string&, bool, bool*, std::vector >*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:487:56: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(local_db_name, " \n\t", all_db_names); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map_switch.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_switch.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=NETBLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast_services.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast_services.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast_services.so /bin/ln -f .blast_services.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblast_app_util.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/snp_annot_info.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/snp_annot_info.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_types_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/cigar.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/cigar.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_loc_cvt.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_selector.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_descr_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp: In member function ‘virtual bool ncbi::objects::CFastaReader::ParseGapLine(const TStr&, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp:1279:35: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/feat_ci.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/feat_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/graph_ci.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/graph_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_object_index.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object_index.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_ci.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_aln_builder.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info.cpp -o tse_info.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info_object.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/featuredump.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/getfeature.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/getfeature.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_info.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:48, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_base_info.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual bool ncbi::objects::CGFFReader::x_ParseStructuredComment(const TStr&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:408:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "# \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual ncbi::CRef ncbi::objects::CGFFReader::x_ParseFeatureInterval(const TStr&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:479:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", v, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:482:58: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2696:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual void ncbi::objects::CGFFReader::x_ParseV3Attributes(ncbi::objects::CGFFReader::SRecord&, const TStrVec&, ncbi::SIZE_TYPE&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:930:53: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v[i], ";", v2, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:938:45: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(values, ",", vals); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_info.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_info.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/data_source.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/priority.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong t+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers-Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/data_source.cpp -o data_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/priority.cpp -o priority.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/prefetch_impl.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_impl.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/microarray_reader.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/phrap.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/prefetch_actions.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_actions.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/heap_scope.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope_impl.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope_info.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_handle.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope.cpp -o scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope_info.cpp -o scope_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_handle.cpp -o tse_handle.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/reader_base.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_map_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_ci.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp: In function ‘ncbi::CRef ncbi::objects::{anonymous}::GetBestId(const TId&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp:146:29: warning: large integer implicitly truncated to unsigned type [-Woverflow] Uint1 best_weight = UINT_MAX; ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp: In member function ‘virtual bool ncbi::objects::CRepeatMaskerReader::ParseRecord(const string&, ncbi::objects::SRepeatRegion&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp:893:43: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] if ( NStr::Split( line, " \t", values ).size() < MIN_VALUE_COUNT ) { ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_annot_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_table_ci.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/wiggle_reader.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_handle.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/gff3_sofa.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_reader.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gtf_reader.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map.cpp -o seq_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_handle.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_annot_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_handle.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0//microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp: In static member function ‘static void ncbi::objects::CGff2Record::TokenizeGFF(std::vector&, const ncbi::CTempStringEx&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp:220:68: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(in_line, "\t", columns, NStr::fSplit_MergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2686:28: note: declared here vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/align_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/align_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp: In member function ‘bool ncbi::objects::CGff2Reader::x_FeatureTrimQualifiers(const ncbi::objects::CGff2Record&, ncbi::CRef)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp:829:38: warning: typedef ‘TAttrs’ locally defined but not used [-Wunused-local-typedefs] typedef CGff2Record::TAttributes TAttrs; ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gvf_reader.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range_map.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/vcf_reader.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/object_manager.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/align_ci.cpp -o align_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader.cpp -o data_loader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range.cpp -o handle_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/object_manager.cpp -o object_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector.cpp -o seq_vector.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector_ci.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seqdesc_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/source_mod_parser.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_split_info.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_split_info.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta_exception.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_exception.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_chunk_info.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_chunk_info.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/agp_converter.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp: In member function ‘void ncbi::CAgpConverter::LoadChromosomeMap(ncbi::CNcbiIstream&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp:143:44: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(line, " \t", split_line); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_vector_ci.cpp g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_ci.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp: In member function ‘void ncbi::objects::CUCSCRegionReader::xSmartFieldSplit(std::vector >&, ncbi::CTempString)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp:184:62: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t.-:", fields, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_type_index.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_type_index.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_loc_mapper.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_mapper.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_collector.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjread.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o message_listener.o line_error.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lcreaders -lxutil -lpub -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjread.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjread.so /bin/ln -f .xobjread.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' -o seq_vector_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_collector.cpp -o annot_collector.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/mapped_feat.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/mapped_feat.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader_factory.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader_factory.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_feat_handle.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqres/Seq_graph_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqres/Seq_graph.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_graph_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_graph_handle.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_align_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_handle.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_assigner.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/edit_commands_impl.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/edit_saver.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/edits_db_saver.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/edits_db_saver.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_finder.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/gc_assembly_parser.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/gc_assembly_parser.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split_parser.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/impl/seq_id_sort.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_id_sort.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjmgr.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjmgr.so /bin/ln -f .xobjmgr.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/weight.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgodustmask.so /bin/ln -f .xalgodustmask.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/sequence.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/segmask/segmask.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/segmask/segmask.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgosegmask.so /bin/ln -f .xalgosegmask.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split TMPL=id2_split -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/split_blob.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:55: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp: In function ‘bool ncbi::objects::feature::sFeatureGetChildrenOfSubtypeFaster(ncbi::objects::CMappedFeat, ncbi::objects::CSeqFeatData::ESubtype, std::vector&, ncbi::objects::feature::CFeatTree&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp:3616:22: warning: unused variable ‘ff’ [-Wunused-variable] const CSeq_feat& ff = mf.GetOriginalFeature(); ^~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp: In function ‘bool ncbi::objects::feature::sFeatureGetChildrenOfSubtype(ncbi::objects::CMappedFeat, ncbi::objects::CSeqFeatData::ESubtype, std::vector&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp:3639:22: warning: unused variable ‘ff’ [-Wunused-variable] const CSeq_feat& ff = mf.GetOriginalFeature(); ^~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘std::__cxx11::string ncbi::s_SeqDB_TryPaths(const string&, const string&, char, bool, ncbi::CSeqDB_FileExistence&, bool)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:361:79: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blast_paths, s_GetPathSplitter(), roads, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/metareg.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/seqtitle.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/seqref.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘const string* ncbi::s_CheckUniqueValues(const std::map, std::__cxx11::basic_string >&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2038:37: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v, ":", items); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In member function ‘void ncbi::CSeqDB_IdRemapper::AddMapping(int, int, const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2072:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘void ncbi::s_GetDetails(const string&, std::__cxx11::string&, std::__cxx11::string&, std::__cxx11::string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2248:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/MolInfo_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/MolInfo.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetFlags(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:787:45: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( clause, ";", kywds ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In function ‘bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:1051:80: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In function ‘std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:1680:61: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:1758:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In function ‘size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2369:68: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2370:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ~~~~^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2440:83: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp:2625:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/id_range.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/id_range.cpp -o id_range.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/object_splitinfo.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/obj_sniff.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/obj_sniff.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/asn_sizer.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/annot_piece.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/annot_piece.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp: In constructor ‘ncbi::objects::CId2ReaderBase::CId2ReaderBase()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:182:68: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(proc_param, ";", proc_list, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/place_id.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/chunk_info.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/chunk_info.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_align_util.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/size.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] int result(-1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable ‘found_short’ set but not used [-Wunused-but-set-variable] int found_short(-1); ^~~~~~~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libid2_split.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libid2_split.so /bin/ln -f .id2_split.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp: In instantiation of ‘bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp:1803:81: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp:1731:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/b /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objmgr/util/objutil.cpp -o objutil.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjutil.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjutil.so /bin/ln -f .xobjutil.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=3,4 all ast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader.a /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader.so /bin/ln -f .ncbi_xreader-static.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader-static.dep /bin/ln -f .ncbi_xreader.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ in/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqdb.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqdb.so /bin/ln -f .seqdb.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static bool ncbi::objects::CCleanup::IsGeneXrefUnnecessary(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const ncbi::objects::CGene_ref&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:686:84: warning: ‘ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)’ is deprecated [-Wdeprecated-declarations] sequence::Compare(g->second->GetLocation(), gene->GetLocation(), &scope) == sequence::eSame) { ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:52:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:59: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘ncbi::SIZE_TYPE ncbi::objects::s_TitleEndsInOrganism(const string&, const string&, ncbi::SIZE_TYPE*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:1803:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] answer = NStr::FindNoCase(sTitle, sPattern, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘void ncbi::objects::s_RemoveOrgFromEndOfProtein(ncbi::objects::CBioseq&, std::__cxx11::string)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:1857:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5575:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp: In function ‘void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef ‘TAlnRngColl’ locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp: In function ‘const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] unsigned long tmp; ^~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup_utils.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libseqmasks_io.so /bin/ln -f .seqmasks_io.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/biblio/biblio_macros.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/misc/sequence_macros.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::GBblockBC(ncbi::objects::CGB_block&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:1099:44: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*it, ";", tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_ExpandThisQual(ncbi::objects::CSeq_feat_Base::TQual&, std::vector >::iterator&, ncbi::objects::CSeq_feat_Base::TQual&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:4154:45: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(valueList, ",", newValues); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_TokenizeTRnaString(const string&, std::__cxx11::list >&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:4604:86: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( tRNA_string_copy, " \t\n\v\f\r", tRNA_tokens, NStr::eMergeDelims ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_CleanupOrgModNoteEC(ncbi::objects::COrg_ref&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5268:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] org.IsSetTaxname() && NStr::Equal(org.GetTaxname(), (*it)->GetSubname()))) { ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_SplitDbtag(ncbi::objects::CDbtag&, std::vector >&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5788:54: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( dbt.GetTag().GetStr(), ":", tags ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_SeqFeatTRNABC(ncbi::objects::CSeq_feat&, ncbi::objects::CTrna_ext&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5855:19: warning: unused variable ‘comment’ [-Wunused-variable] const string &comment = ( FIELD_IS_SET(feat, Comment) ? GET_FIELD(feat, Comment) : kEmptyStr ); ^~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_ParsePCRComponent(std::vector >&, const string*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:5891:59: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( component_copy, string(","), out_list ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘void ncbi::objects::s_ParsePCRColonString(std::vector >&, const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:6005:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( str, ":", out_list ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::Except_textBC(std::__cxx11::string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:7099:49: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize (except_text, ",", exceptions); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘bool ncbi::objects::s_SplitGeneSyn(const string&, std::vector >&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:7346:53: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( syn, ",", pieces_split_by_comma ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:7351:77: warning: ‘static std::vector >& ncbi::NStr::TokenizePattern(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::TokenizePattern( *piece_iter, "; ", pieces_split_by_semicolon ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_autoinit.hpp:46, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2705:21: note: declared here vector& TokenizePattern(const CTempString str, ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp: In member function ‘ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmap.cpp:1467:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/dbindex.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘bool ncbi::objects::HasAuthor(const ncbi::objects::CPubdesc&, bool)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:11133:10: warning: unused variable ‘is_patent’ [-Wunused-variable] bool is_patent = false; ^~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp: In static member function ‘static bool ncbi::objects::CNewCleanup_imp::ShouldRemoveAnnot(const ncbi::objects::CSeq_annot&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp:11412:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (!s_RetainEmptyAnnot(annot) && ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ (annot.IsFtable() && annot.GetData().GetFtable().empty()) || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function ‘static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ match1->m_Score > match2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp: In member function ‘void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand1 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 != eNa_strand_minus)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_CreateDenseg()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/obmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgoblastdbindex.so /bin/ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: ‘width2’ may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp: In static member function ‘static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ jtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_cache.a /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_cache.so /bin/ln -f .ncbi_xreader_cache-static.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/ln -f .ncbi_xreader_cache.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.so .libxcleanup.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcleanup.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjutil -lvalid -lsubmit -ltaxon3 -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxcleanup.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxcleanup.so /bin/ln -f .xcleanup.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xcleanup.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/general__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alntext.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id1.a /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id1.so /bin/ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/score_builder_base.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id2.a /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xreader_id2.so /bin/ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalnmgr.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalnmgr.so /bin/ln -f .xalnmgr.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastdb_format.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastdb_format.so /bin/ln -f .blastdb_format.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o makembindex /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f makembindex /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/makembindex make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function ‘void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:79:18: warning: variable ‘wholeL’ set but not used [-Wunused-but-set-variable] int wholeL(0); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_blastdb.so /bin/ln -f .ncbi_xloader_blastdb.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSeqId::test_method()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:150:47: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(string(buffer), " ", tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o gene_info_reader /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gene_info_reader /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o seqdb_demo /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqdb_demo /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seq_writer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o blastdb_format_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o seqdb_perf /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqdb_perf /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_services_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_services_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function ‘bool ncbi::objects::CGBDataLoader::x_CreateReaders(const string&, const TParamTree*, ncbi::objects::CGBLoaderParams::EPreopenConnection)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:636:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, ";", str_list, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp: In member function ‘void ncbi::objects::CGBDataLoader::x_CreateWriters(const string&, const TParamTree*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:660:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(str, ";", str_list, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In constructor ‘ncbi::CWriteDB_File::CWriteDB_File(const string&, const string&, int, Uint8, bool)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:120:24: warning: unused variable ‘MAX_FILE_SIZE’ [-Wunused-variable] static const Uint8 MAX_FILE_SIZE = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In member function ‘int ncbi::CWriteDB_File::Write(const ncbi::CTempString&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:152:24: warning: unused variable ‘MAX_OFFSET’ [-Wunused-variable] static const Uint8 MAX_OFFSET = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o seqdb_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqdb_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_genbank.a /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_genbank.so /bin/ln -f .ncbi_xloader_genbank-static.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/ln -f .ncbi_xloader_genbank.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/accession_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blamake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/basecount_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/comment_item.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Delta_ext_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Delta_ext.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/contig_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/date_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/dbsource_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/defline_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/defline_item.cpp -o defline_item.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:45: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_item.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_SplitCommaSeparatedStringInParens(std::vector >&, const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:873:120: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( string_to_split.substr( 1, string_to_split.length() - amount_to_chop_off_end - 1), ",", output_vec ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:1391:49: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( raw_exception, ",", exceptions ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In function ‘const string& ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:1788:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_ParseParentQual(const ncbi::objects::CGb_qual&, std::__cxx11::list >&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:3346:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(val, "(,)", vals); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddRptUnitQual(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:3777:39: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(tmp, ",", units); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncst+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/seqloc__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/ctrl_items.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqblock/PIR_block_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqblock/PIR_block.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTLARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libwritedb.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libwritedb.so /bin/ln -f .writedb.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp: In member function ‘void ncbi::objects::CKeywordsItem::x_AddKeyword(const string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp:378:38: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( keyword, ";", kywds ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/simple/simple_om.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/dustmasker TMPL=dustmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/dustmasker/main.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxobjsimple.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxobjsimple.so /bin/ln -f .xobjsimple.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/locus_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor ‘ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: ‘unit_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ~^~~~~~~~~~ IFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o dustmasker /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f dustmasker /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp: In member function ‘void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp: In static member function ‘static void ncbi::objects::CReferenceItem::ChangeMedlineAuthorsToISO(ncbi::CRef)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp:1300:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(author_name, " ", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/segment_item.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ bi-blast+-2.4.0/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/primary_item.cpp -o primary_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/segment_item.cpp -o segment_item.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/sequence_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqblock/GB_block_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqblock/GB_block.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/version_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/wgs_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/tsa_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Int_fuzz_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Int_fuzz.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_seqloc.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/formake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o writedb_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f writedb_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/qualifiers.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/context.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static void ncbi::align_format::CAlignFormatUtil::PrintTildeSepLines(std::__cxx11::string, size_t, ncbi::CNcbiOstream&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:208:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, "~", split_line); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/align_format/align_format_util.hpp:32, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static std::__cxx11::string ncbi::align_format::CAlignFormatUtil::MapTemplate(std::__cxx11::string, std::__cxx11::string, Int8)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:2992:70: warning: ‘static std::__cxx11::string ncbi::NStr::IntToString(long int, ncbi::NStr::TNumToStringFlags, int)’ is deprecated [-Wdeprecated-declarations] NStr::Replace(inpString,tmplParam,NStr::IntToString(templParamVal),outString); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/align_format/align_format_util.hpp:32, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:5063:8: note: declared here string NStr::IntToString(long value, ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp: In member function ‘virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp:37:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/win_mask_config.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ mat/sequence_item.cpp -o sequence_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/source_item.cpp -o source_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/context.cpp -o context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp -o gather_items.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_gather.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp: In static member function ‘static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(type == eAny || type >= eGenerateMasksWithDuster) ^~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ arg_desc.AddDefaultKey( "dust_level", "dust_level", ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp: At global scope: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_items.cpp:747:13: warning: ‘bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)’ defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_gather.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat.cpp:32: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++PIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxalgowinmask.so /bin/ln -f .xalgowinmask.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showdefline.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/biblio/Cit_book_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/biblio/Cit_book.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/item_formatter.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp: In member function ‘void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:173:10: warning: unused variable ‘nearFeatsSuppress’ [-Wunused-variable] bool nearFeatsSuppress = false; ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:176:10: warning: variable ‘isNgNtNwNz’ set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:177:10: warning: variable ‘isGED’ set but not used [-Wunused-but-set-variable] bool isGED = false; ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp:178:10: warning: variable ‘isTPA’ set but not used [-Wunused-but-set-variable] bool isTPA = false; ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_cxx.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/align_format/showalign.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/tabular.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_formatter.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp: In function ‘void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp:4387:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp:4387:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function ‘bool ncbi::blast::CBlastOptionsLocal::Validate() const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:383:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:391:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return true; ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/tempstr.hpp:38:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGapItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::COriginItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CContigItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CPrimaryItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CTSAItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CWGSItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDBSourceItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSequenceItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CBaseCountItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatureItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceFeatureItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatHeaderItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CCommentItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CReferenceItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSegmentItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CKeywordsItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CHtmlAnchorItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGenomeProjectItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CVersionItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CAccessionItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDeflineItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CLocusItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CEndSectionItem]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:2318:1: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/align_format/vectorscreen.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/vectorscreen.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_setup_cxx.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/format_item_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/format_item_ostream.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/item_ostream.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/seqalignfilter.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/ostream_text_ostream.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/ostream_text_ostream.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/binmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/origin_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/taxFormat.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/aln_printer.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_gather.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_Omake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_formatter.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -ltaxon1 -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libalign_format.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libalign_format.so /bin/ln -f .align_format.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker TMPL=winmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_app.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blastx_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp: In function ‘void ncbi::objects::s_GBSeqStringCleanup(std::__cxx11::string&, bool)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:82:36: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, " \n\r\t\b", l); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘virtual void ncbi::objects::CGBSeqFormatter::FormatGenomeProject(const ncbi::objects::CGenomeProjectItem&, ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:358:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(second, ",", ids); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘void ncbi::objects::CGBSeqFormatter::x_StrOStreamToTextOStream(ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:685:70: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split((string)CNcbiOstrstreamToString(m_StrStream), "\n", l); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2495:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ GEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/accession_item.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqdb -lblastdb -lseqmasks_io -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o windowmasker /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f windowmasker /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/windowmasker make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/pssm_engine.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp: In function ‘ncbi::objects::CFlatFileConfig::TGenbankBlocks ncbi::objects::{anonymous}::x_GetGenbankBlocks(const ncbi::CArgs&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp:832:52: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blocks_arg, ",", vecOfBlockNames); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/flat_file_config.hpp:34, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_blast.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/alignment_item.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_blast.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/gap_item.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gap_item.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gap_item.cpp -o gap_item.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/b-c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_project_item.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/cigar_formatter.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/sam_formatter.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/cigar_formatter.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/gather_iter.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_iter.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/html_anchor_item.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/gene_finder.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gene_finder.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/OrgMod_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqfeat/OrgMod.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/items/flat_qual_slots.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_qual_slots.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bl2seq.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/builmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o align_format_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f align_format_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' d/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCEin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /bin/rm -f libxformat.so .libxformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxformat.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxformat.so /bin/ln -f .xformat.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xformat.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psibl2seq.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_db_adapter.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_iteration.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psi_pssm_input.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp:380:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp: In member function ‘void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] m_Query.Reset(new CObjMgrFree_QueryFactory(query_bioseq)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp:45:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux_priv.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux_priv.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function ‘void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:474:41: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef seq_fetcher(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:47:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/dust_filter.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rps_aux.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/search_strategy.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/setup_factory.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/prelim_stage.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/traceback_stage.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/uniform_search.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/scoremat/Pssm.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_results.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_search.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp: In member function ‘virtual ncbi::CRef ncbi::blast::CLocalPssmSearch::Run()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp:171:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp:55:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/query_data.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/query_data.cpp -o query_data.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgr_query_data.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_dbindex.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_cxx.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_aux_priv.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_blk.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/winmask_filter.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpsblast_local.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp: In member function ‘void ncbi::blast::CSeedTop::x_ParsePattern()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp:66:56: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(NStr::ToUpper(m_Pattern), "-", units); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seedtop.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/cdd_pssm_input.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxblast.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastfmtutil.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp: In constructor ‘ncbi::blast::CIgAnnotationInfo::CIgAnnotationInfo(ncbi::CConstRef&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:96:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:120:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp: In member function ‘void ncbi::blast::CIgBlast::x_ScreenV(ncbi::CRef&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp:142:73: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((*it)->GetAlignLength() - (*it)->GetTotalGapCount(0) < m_IgOptions->m_MinVLength){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aalookup_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f aalookup_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/aalookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libigblast.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libigblast.so /bin/ln -f .igblast.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.igblast.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:506:86: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbimisc.hpp:1193:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:789:89: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbimisc.hpp:1193:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdiag_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastdiag_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdiag_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml2_format.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aascan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f aascan_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/aascan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_args.cpp:45: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function ‘void blastengine::testBlastpPrelimSearch::test_method()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastengine_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastengine_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastengine_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:52:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:54:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp: In member function ‘void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp:507:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ~~~~~~^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastextend_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastextend_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blasthits_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blasthits_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp:41:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastp_args.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::RemoteOptionsTest::test_method()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:145:9: note: in definition of macro ‘BOOST_CHECK_NO_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testRemoteFilterString::test_method()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1328:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1332:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1337:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1339:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1343:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1345:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1349:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1351:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1355:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1357:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1324:50: warning: typedef ‘TBlast4Opts’ locally defined but not used [-Wunused-local-typedefs] typedef ncbi::objects::CBlast4_parameters TBlast4Opts; ^~~~~~~~~~~ In file included from /usr/include/boost/test/test_tools.hpp:45:0, from /usr/include/boost/test/unit_test.hpp:18, from /usr/include/boost/test/auto_unit_test.hpp:16, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:66, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testOptionsDeepCopy::test_method()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1396:57: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/data4xml2format.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastn_args.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastfilter_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/build_archive.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastoptions_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp:25: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/vecscreen_run.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFmake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gapinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxncbi -ldl -lm -lpthread -o gapinfo_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastx_args.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o gencode_singleton_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastn_args.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastsetup_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastsetup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp: In member function ‘void ncbi::objects::CBlast_SAM_Formatter::x_ProcessCustomSpec(const string&, const ncbi::objects::CSAM_Formatter::SProgramInfo&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp:88:48: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(custom_spec, " ", format_tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_besthit_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j --jobserver-fds=3,4 all SET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/format/sam.cpp -o sam.o /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblastformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxformat -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lalign_format -lblastxml -lblastxml2 -lxhtml -lxcgi -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libxblastformat.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libxblastformat.so /bin/ln -f .xblastformat.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastx_args.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_culling_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/psiblast_args.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o hspstream_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f hspstream_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/hspstream_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ _SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-formamake[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o msa2pssm_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/msa2pssm_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastn_args.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastp_args.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/deltablast_args.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j --jobserver-fds=3,4 all t-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib /bin/ln -f libblastinput.so /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib/libblastinput.so /bin/ln -f .blastinput.dep /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntscan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntscan_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f ntscan_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o phiblast_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f phiblast_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o prelimsearch_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie optionshandle_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o optionshandle_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/optionshandle_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_iteration_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/psibl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function ‘static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq(ncbi::TGi)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:495:47: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function ‘static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set(const std::vector&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:509:47: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function ‘void QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths::test_method()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:580:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs)); /* NCBI_FAKE_WARNING */ ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psiblast_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/psiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie querydata_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f querydata_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/querydata_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Std_seg_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Std_seg.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rps_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f rps_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/pssmcreate_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie scoreblk_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o scoreblk_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/scoreblk_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/search_strategy.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie remote_blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o setupfactory_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/setupfactory_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie search_strategy_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp: In instantiation of ‘void CSplitQueryTestFixture::x_ParseConfigLine(const string&, std::vector&) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:685:52: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:916:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(input, ",", tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie stat_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o stat_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f stat_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/stat_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp: In instantiation of ‘void CSplitQueryTestFixture::x_ParseConfigLine(const string&, std::vector&) [with T = int; std::__cxx11::string = std::__cxx11::basic_string]’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:903:13: required from ‘void CSplitQueryTestFixture::x_ReadVectorOfVectorsForTest(const string&, const char*, std::vector >&) [with T = int; std::__cxx11::string = std::__cxx11::basic_string]’ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:405:75: required from here /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:916:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(input, ",", tokens); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/test_boost.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2669:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/subj_ranges_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie split_query_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o split_query_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f split_query_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/split_query_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie traceback_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f traceback_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o tracebacksearch_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/tracebacksearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -ldl -lm -lpthread -o version_reference_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f version_reference_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blast_formatter -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blast_formatter.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie uniform_search_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o uniform_search_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/uniform_search_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blastn_app.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include -I../ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blastp -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blastp_app.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blast_formatter /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_formatter /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=blastx -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blastx_app.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastn /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=deltablast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/deltablast.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/deltablast_app.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastp /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastp /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=psiblast -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function ‘void blast_archive::BuildArchiveWithDB::test_method()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:79:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:48:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function ‘void blast_archive::BuildArchiveWithBl2seq::test_method()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:118:43: warning: ‘CObjMgrFree_QueryFactory’ is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:48:0: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/psiblast_app.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastx /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastx /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=rpsblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/rpsblast_app.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o deltablast /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f deltablast /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=rpstblastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/rpstblastn_app.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o psiblast /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f psiblast /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=seedtop -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o rpsblast /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f rpsblast /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=tblastn -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o blast_format_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_format_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/seedtop_app.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast TMPL=tblastx -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/tblastn_app.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/tblastx_app.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o rpstblastn /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f rpstblastn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdb_aliastool.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o seedtop /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f seedtop /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdbcheck -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o tblastx /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f tblastx /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdbcmd -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o tblastn /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f tblastn /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=blastdbcp -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:39: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp:43: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcp.cpp:33: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘int CAliasTest::DoTest(const string&, TSeen&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:720:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*line, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘virtual bool CDbTest::Test(CTestActionList&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:941:54: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(m_Db, " ", dbs, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp: In member function ‘int CBlastDBCmdApp::x_ProcessBatchEntry(const ncbi::CArgs&, ncbi::CSeqFormatter&)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp:446:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(queries.empty()) ^~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp:449:13: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ TSeqRange seq_range(TSeqRange::GetEmpty()); ^~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdb_aliastool /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdb_aliastool /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=convert2blastmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/convert2blastmask.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcp /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdbcp /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=makeblastdb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:42: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcheck /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdbcheck /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb TMPL=makeprofiledb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o blastdbcmd /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastdbcmd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/segmasker TMPL=segmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeprofiledb.cpp:40: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp: In member function ‘void CMakeBlastDBApp::x_ProcessMaskData()’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:820:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:845:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:858:40: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/version.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/version.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp:41: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/corelib/ncbistr.hpp:2677:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/segmasker/segmasker.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqmasks_io -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o convert2blastmask /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f convert2blastmask /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:35: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lxobjsimple -lseqmasks_io -lxalgosegmask -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lnsl -ldl -ldl -lm -lpthread -o segmasker /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f segmasker /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o makeprofiledb /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f makeprofiledb /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/masked_range_set.cpp:31: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blast_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lnsl -ldl -lm -lpthread -o makeblastdb /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f makeblastdb /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:38: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:37: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:518:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include/util/bitset/bmfunc.h:527:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o delta_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f delta_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/delta_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bl2seq_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/bl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/inc -I/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/include /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -L/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastinput_unit_test /bin/bash /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin /bin/ln -f blastinput_unit_test /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build' make[2]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build' make[1]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' echo "Save time and do nothing for architecture independent builds" Save time and do nothing for architecture independent builds make[1]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' dh_auto_test /usr/bin/make -j1 check VERBOSE=1 make[2]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++' if test -s ""; then \ cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build' ====================================================================== make[4]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/compress' /bin/echo 'Warning: non-existent sub-project "diff"' Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make -C services -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "ext"' Warning: non-existent sub-project "ext" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/html' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system' /usr/bin/make -C helpers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' /usr/bin/make -f /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial/datatool' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/serial' /bin/echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -C blastxml2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/ncbimime' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -C gbproj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbproj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/gbproj' /usr/bin/make -C trackmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/trackmgr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/trackmgr' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/access' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/macro' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/macro' /usr/bin/make -C genesbyloc -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genesbyloc' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/genesbyloc' /usr/bin/make -C coords -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/coords' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects/coords' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/format' /usr/bin/make -C edit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" /bin/echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools/align_format' /bin/echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" /bin/echo 'Warning: non-existent sub-project "uudutil"' Warning: non-existent sub-project "uudutil" /bin/echo 'Warning: non-existent sub-project "variation"' Warning: non-existent sub-project "variation" /bin/echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test TEST -- algo/blast/unit_tests/api/aalookup_unit_test TEST -- algo/blast/unit_tests/api/seqsrc_unit_test TEST -- algo/blast/unit_tests/api/delta_unit_test TEST -- algo/blast/unit_tests/api/ntlookup_unit_test TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test TEST -- algo/blast/unit_tests/api/setupfactory_unit_test TEST -- algo/blast/unit_tests/api/search_strategy_unit_test TEST -- algo/blast/unit_tests/api/redoalignment_unit_test TEST -- algo/blast/unit_tests/api/queryinfo_unit_test TEST -- algo/blast/unit_tests/api/querydata_unit_test TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test TEST -- algo/blast/unit_tests/api/blastsetup_unit_test TEST -- algo/blast/unit_tests/api/blastextend_unit_test TEST -- algo/blast/unit_tests/api/blastdiag_unit_test TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test TEST -- algo/blast/unit_tests/api/optionshandle_unit_test TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test TEST -- algo/blast/unit_tests/api/traceback_unit_test TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test TEST -- algo/blast/unit_tests/api/psiblast_unit_test TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test TEST -- algo/blast/unit_tests/api/phiblast_unit_test TEST -- algo/blast/unit_tests/api/split_query_unit_test TEST -- algo/blast/unit_tests/api/scoreblk_unit_test TEST -- algo/blast/unit_tests/api/hspstream_unit_test TEST -- algo/blast/unit_tests/api/rps_unit_test TEST -- algo/blast/unit_tests/api/gapinfo_unit_test TEST -- algo/blast/unit_tests/api/blasthits_unit_test TEST -- algo/blast/unit_tests/api/linkhsp_unit_test TEST -- algo/blast/unit_tests/api/blastengine_unit_test TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test TEST -- algo/blast/unit_tests/api/version_reference_unit_test TEST -- algo/blast/unit_tests/api/ntscan_unit_test TEST -- algo/blast/unit_tests/api/aascan_unit_test TEST -- algo/blast/unit_tests/api/remote_blast_unit_test TEST -- algo/blast/unit_tests/api/uniform_search_unit_test TEST -- algo/blast/unit_tests/api/blastfilter_unit_test TEST -- algo/blast/unit_tests/api/blastoptions_unit_test TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test TEST -- algo/blast/unit_tests/api/bl2seq_unit_test TEST -- algo/blast/unit_tests/api/stat_unit_test make[8]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /bin/echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" /bin/echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" /bin/echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" /bin/echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" /bin/echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" /bin/echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" /bin/echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" /bin/echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" /bin/echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" /bin/echo 'Warning: non-existent sub-project "primer"' Warning: non-existent sub-project "primer" /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo' /bin/echo 'Warning: non-existent sub-project "misc"' Warning: non-existent sub-project "misc" /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" /bin/echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" /bin/echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" /bin/echo 'Warning: non-existent sub-project "asn_cleanup"' Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blast' /bin/echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" /bin/echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" /bin/echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" /bin/echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" /bin/echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" /bin/echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app/blastdb' /bin/echo 'Warning: non-existent sub-project "vecscreen"' Warning: non-existent sub-project "vecscreen" /bin/echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" /bin/echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" /bin/echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" /bin/echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" /bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" /bin/echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" /bin/echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" /bin/echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" /bin/echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" /bin/echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" /bin/echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" /bin/echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" /bin/echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" /bin/echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" /bin/echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" /bin/echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" /bin/echo 'Warning: non-existent sub-project "lds2_indexer"' Warning: non-existent sub-project "lds2_indexer" /bin/echo 'Warning: non-existent sub-project "discrep_report"' Warning: non-existent sub-project "discrep_report" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "biosample_chk"' Warning: non-existent sub-project "biosample_chk" /bin/echo 'Warning: non-existent sub-project "gap_stats"' Warning: non-existent sub-project "gap_stats" /bin/echo 'Warning: non-existent sub-project "table2asn"' Warning: non-existent sub-project "table2asn" /bin/echo 'Warning: non-existent sub-project "srcchk"' Warning: non-existent sub-project "srcchk" /bin/echo 'Warning: non-existent sub-project "tableval"' Warning: non-existent sub-project "tableval" /bin/echo 'Warning: non-existent sub-project "ncbi_encrypt"' Warning: non-existent sub-project "ncbi_encrypt" /bin/echo 'Warning: non-existent sub-project "ssub_fork"' Warning: non-existent sub-project "ssub_fork" /bin/echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" /bin/echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" /bin/echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" /bin/echo 'Warning: non-existent sub-project "rmblastn"' Warning: non-existent sub-project "rmblastn" /bin/echo 'Warning: non-existent sub-project "dblb"' Warning: non-existent sub-project "dblb" /bin/echo 'Warning: non-existent sub-project "tls"' Warning: non-existent sub-project "tls" make[5]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" /bin/echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/align_format/unit_test/align_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/blastinput/unit_test/blastinput_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blast_format/blast_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blastdb/bdbloader_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/aalookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqsrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/delta_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntlookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqinfosrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/setupfactory_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/search_strategy_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/redoalignment_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/queryinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/querydata_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastsetup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastextend_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmcreate_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_iteration_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_culling_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/optionshandle_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/msa2pssm_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/tracebacksearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/traceback_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psibl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/prelimsearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/phiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/split_query_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/scoreblk_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspstream_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/rps_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gapinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blasthits_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/linkhsp_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastengine_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/subj_ranges_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/version_reference_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntscan_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/remote_blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/uniform_search_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastfilter_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastoptions_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gencode_singleton_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/bl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/stat_unit_test (unmet CHECK_REQUIRES) Done. OK -- [serial/datatool] datatool.sh (real 0.34, user 0.13, sys 0.14) SKP -- [serial/datatool] datatool_xml.sh OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.01, sys 0.01) OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.02, user 0.00, sys 0.01) ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.84, user 0.05, sys 0.09) Succeeded : 3 Timeout : 0 Failed : 1 Absent : 1 /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/build-system/Makefile.meta_r:46: recipe for target 'check_r.real' failed make[3]: *** [check_r.real] Error 7 make[3]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build' Makefile:33: recipe for target 'check' failed make[2]: *** [check] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++' dh_auto_test: /usr/bin/make -j1 check VERBOSE=1 returned exit code 2 debian/rules:60: recipe for target 'override_dh_auto_test' failed make[1]: [override_dh_auto_test] Error 2 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.84, user 0.05, sys 0.09) ====================================================================== aascan_unit_test ====================================================================== 09805/000/0000/PB 840D264D7A623271 0001/0001 2016-08-06T17:49:27.060152 lcy01-03 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test Running 4 test cases... 09805/000/0000/PE 840D264D7A623271 0002/0002 2016-08-06T17:49:27.066577 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test extra ncbi_phid=840D264D7A6232710000000000001040 09805/000/0000/PE 840D264D7A623271 0003/0003 2016-08-06T17:49:27.071111 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#1000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0004/0004 2016-08-06T17:49:27.071234 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0005/0005 2016-08-06T17:49:27.071279 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0006/0006 2016-08-06T17:49:27.071325 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0008/0008 2016-08-06T17:49:27.074629 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#2000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0009/0009 2016-08-06T17:49:27.074679 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0010/0010 2016-08-06T17:49:27.074710 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0011/0011 2016-08-06T17:49:27.074733 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0013/0013 2016-08-06T17:49:28.078659 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#3000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0014/0014 2016-08-06T17:49:28.078731 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0015/0015 2016-08-06T17:49:28.078763 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0016/0016 2016-08-06T17:49:28.078789 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0018/0018 2016-08-06T17:49:31.218476 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#4000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0019/0019 2016-08-06T17:49:31.218574 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0020/0020 2016-08-06T17:49:31.218626 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0021/0021 2016-08-06T17:49:31.218655 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0023/0023 2016-08-06T17:49:35.972634 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#5000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0024/0024 2016-08-06T17:49:35.972713 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0025/0025 2016-08-06T17:49:35.972763 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0026/0026 2016-08-06T17:49:35.972789 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(250): last checkpoint: "ScanOffsetTest" fixture entry. 09805/000/0000/PE 840D264D7A623271 0030/0030 2016-08-06T17:49:35.978035 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#6000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0031/0031 2016-08-06T17:49:35.978074 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0032/0032 2016-08-06T17:49:35.978103 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0033/0033 2016-08-06T17:49:35.978156 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0035/0035 2016-08-06T17:49:35.981031 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#7000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0036/0036 2016-08-06T17:49:35.981070 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0037/0037 2016-08-06T17:49:35.981098 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0038/0038 2016-08-06T17:49:35.981120 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0040/0040 2016-08-06T17:49:36.984743 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#8000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0041/0041 2016-08-06T17:49:36.984835 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0042/0042 2016-08-06T17:49:36.984877 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0043/0043 2016-08-06T17:49:36.984905 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0045/0045 2016-08-06T17:49:39.489450 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#9000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0046/0046 2016-08-06T17:49:39.489529 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0047/0047 2016-08-06T17:49:39.489564 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0048/0048 2016-08-06T17:49:39.489592 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0050/0050 2016-08-06T17:49:44.243705 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#10000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0051/0051 2016-08-06T17:49:44.243804 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0052/0052 2016-08-06T17:49:44.243845 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0053/0053 2016-08-06T17:49:44.243869 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanMaxHitsTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(330): last checkpoint: "ScanMaxHitsTest" fixture entry. 09805/000/0000/PE 840D264D7A623271 0057/0057 2016-08-06T17:49:44.247250 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#11000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0058/0058 2016-08-06T17:49:44.247286 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0059/0059 2016-08-06T17:49:44.247314 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0060/0060 2016-08-06T17:49:44.247334 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0062/0062 2016-08-06T17:49:44.250362 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#12000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0063/0063 2016-08-06T17:49:44.250402 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0064/0064 2016-08-06T17:49:44.250431 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0065/0065 2016-08-06T17:49:44.250453 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0067/0067 2016-08-06T17:49:45.253901 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#13000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0068/0068 2016-08-06T17:49:45.253966 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0069/0069 2016-08-06T17:49:45.253998 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0070/0070 2016-08-06T17:49:45.254023 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0072/0072 2016-08-06T17:49:47.757880 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#14000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0073/0073 2016-08-06T17:49:47.757952 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0074/0074 2016-08-06T17:49:47.757984 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0075/0075 2016-08-06T17:49:47.758010 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0077/0077 2016-08-06T17:49:52.513266 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#15000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0078/0078 2016-08-06T17:49:52.513495 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0079/0079 2016-08-06T17:49:52.513534 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0080/0080 2016-08-06T17:49:52.513562 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/SkipMaskedRanges": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(383): last checkpoint: "SkipMaskedRanges" fixture entry. 09805/000/0000/PE 840D264D7A623271 0084/0084 2016-08-06T17:49:52.518035 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#16000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0085/0085 2016-08-06T17:49:52.518081 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0086/0086 2016-08-06T17:49:52.518110 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0087/0087 2016-08-06T17:49:52.518132 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0089/0089 2016-08-06T17:49:52.522468 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#17000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0090/0090 2016-08-06T17:49:52.522533 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0091/0091 2016-08-06T17:49:52.522575 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0092/0092 2016-08-06T17:49:52.522600 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0094/0094 2016-08-06T17:49:53.527811 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#18000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0095/0095 2016-08-06T17:49:53.527881 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0096/0096 2016-08-06T17:49:53.527912 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0097/0097 2016-08-06T17:49:53.527936 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0099/0099 2016-08-06T17:49:56.032856 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#19000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0100/0100 2016-08-06T17:49:56.032938 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0101/0101 2016-08-06T17:49:56.032977 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0102/0102 2016-08-06T17:49:56.033004 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 09805/000/0000/PE 840D264D7A623271 0104/0104 2016-08-06T17:50:00.788462 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4061: UNK_FUNC --- SOCK#20000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 09805/000/0000/PE 840D264D7A623271 0105/0105 2016-08-06T17:50:00.788536 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1672: UNK_FUNC --- [URL_Connect; http://www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-03.buildd(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown 09805/000/0000/PE 840D264D7A623271 0106/0106 2016-08-06T17:50:00.788568 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 09805/000/0000/PE 840D264D7A623271 0107/0107 2016-08-06T17:50:00.788606 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanCheckScores": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(433): last checkpoint: "ScanCheckScores" fixture entry. Executed 4 test cases. *** 4 failures are detected in the test module "Master Test Suite" 09805/000/0000/PE 840D264D7A623271 0111/0111 2016-08-06T17:50:00.793153 lcy01-03 UNK_CLIENT 840D264D7A623271_0000SID aascan_unit_test stop 201 33.794636964 Command exited with non-zero status 201 real 33.84 user 0.05 sys 0.09 Start time : 08/06/2016 17:49:26 Stop time : 08/06/2016 17:50:00 Load averages: 2.76 3.66 3.03 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 201 make[1]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' fakeroot debian/rules binary dh binary -Dc++ --with autotools_dev dh_testroot -O-Dc\+\+ dh_prep -O-Dc\+\+ dh_installdirs -O-Dc\+\+ debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' # cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' echo "Nothing to do for architecture independant installs" Nothing to do for architecture independant installs make[1]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' debian/rules override_dh_install-arch make[1]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool debian/ncbi-blast+/usr/bin/run_with_lock \ debian/ncbi-blast+/usr/bin/project_tree_builder for x in debian/ncbi-blast+/usr/bin/*; do \ LD_LIBRARY_PATH=c++/BUILD/lib ldd $x; \ done 2>/dev/null | awk '/BUILD/ { print $3 }' | sort -u | \ xargs cp -v -t debian/ncbi-blast+/usr/lib/ncbi-blast+ 'c++/BUILD/lib/libalign_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libalign_format.so' 'c++/BUILD/lib/libbiblio.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libbiblio.so' 'c++/BUILD/lib/libblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast.so' 'c++/BUILD/lib/libblast_services.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast_services.so' 'c++/BUILD/lib/libblastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb.so' 'c++/BUILD/lib/libblastdb_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb_format.so' 'c++/BUILD/lib/libblastinput.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastinput.so' 'c++/BUILD/lib/libblastxml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml.so' 'c++/BUILD/lib/libblastxml2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml2.so' 'c++/BUILD/lib/libcomposition_adjustment.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcomposition_adjustment.so' 'c++/BUILD/lib/libcreaders.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcreaders.so' 'c++/BUILD/lib/libgbseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgbseq.so' 'c++/BUILD/lib/libgene_info.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgene_info.so' 'c++/BUILD/lib/libgeneral.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgeneral.so' 'c++/BUILD/lib/libgenome_collection.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgenome_collection.so' 'c++/BUILD/lib/libid1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid1.so' 'c++/BUILD/lib/libid2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid2.so' 'c++/BUILD/lib/libmedlars.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedlars.so' 'c++/BUILD/lib/libmedline.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedline.so' 'c++/BUILD/lib/libmla.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmla.so' 'c++/BUILD/lib/libmlacli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmlacli.so' 'c++/BUILD/lib/libncbi_xloader_blastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so' 'c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so' 'c++/BUILD/lib/libncbi_xloader_genbank.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_genbank.so' 'c++/BUILD/lib/libncbi_xreader.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader.so' 'c++/BUILD/lib/libncbi_xreader_cache.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_cache.so' 'c++/BUILD/lib/libncbi_xreader_id1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id1.so' 'c++/BUILD/lib/libncbi_xreader_id2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id2.so' 'c++/BUILD/lib/libpub.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpub.so' 'c++/BUILD/lib/libpubmed.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpubmed.so' 'c++/BUILD/lib/libscoremat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libscoremat.so' 'c++/BUILD/lib/libseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseq.so' 'c++/BUILD/lib/libseqcode.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqcode.so' 'c++/BUILD/lib/libseqdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqdb.so' 'c++/BUILD/lib/libseqedit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqedit.so' 'c++/BUILD/lib/libseqmasks_io.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqmasks_io.so' 'c++/BUILD/lib/libseqset.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqset.so' 'c++/BUILD/lib/libseqsplit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqsplit.so' 'c++/BUILD/lib/libsequtil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsequtil.so' 'c++/BUILD/lib/libsubmit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsubmit.so' 'c++/BUILD/lib/libtables.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtables.so' 'c++/BUILD/lib/libtaxon1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon1.so' 'c++/BUILD/lib/libtaxon3.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon3.so' 'c++/BUILD/lib/libvalid.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libvalid.so' 'c++/BUILD/lib/libwritedb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libwritedb.so' 'c++/BUILD/lib/libxalgoblastdbindex.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgoblastdbindex.so' 'c++/BUILD/lib/libxalgodustmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgodustmask.so' 'c++/BUILD/lib/libxalgosegmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgosegmask.so' 'c++/BUILD/lib/libxalgowinmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgowinmask.so' 'c++/BUILD/lib/libxalnmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalnmgr.so' 'c++/BUILD/lib/libxblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblast.so' 'c++/BUILD/lib/libxblastformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblastformat.so' 'c++/BUILD/lib/libxcgi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcgi.so' 'c++/BUILD/lib/libxcleanup.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcleanup.so' 'c++/BUILD/lib/libxcompress.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcompress.so' 'c++/BUILD/lib/libxconnect.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxconnect.so' 'c++/BUILD/lib/libxformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxformat.so' 'c++/BUILD/lib/libxhtml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxhtml.so' 'c++/BUILD/lib/libxncbi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxncbi.so' 'c++/BUILD/lib/libxnetblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblast.so' 'c++/BUILD/lib/libxnetblastcli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblastcli.so' 'c++/BUILD/lib/libxobjmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjmgr.so' 'c++/BUILD/lib/libxobjread.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjread.so' 'c++/BUILD/lib/libxobjutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjutil.so' 'c++/BUILD/lib/libxregexp.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxregexp.so' 'c++/BUILD/lib/libxser.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxser.so' 'c++/BUILD/lib/libxutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxutil.so' make[1]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' debian/rules override_dh_install-indep make[1]: Entering directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' if test -d debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin; then cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin/; fi make[1]: Leaving directory '/build/ncbi-blast+-ItPhgZ/ncbi-blast+-2.4.0' dh_installdocs -O-Dc\+\+ dh_installchangelogs -O-Dc\+\+ dh_installexamples -O-Dc\+\+ dh_installman -O-Dc\+\+ dh_installcatalogs -O-Dc\+\+ dh_installcron -O-Dc\+\+ dh_installdebconf -O-Dc\+\+ dh_installemacsen -O-Dc\+\+ dh_installifupdown -O-Dc\+\+ dh_installinfo -O-Dc\+\+ dh_installinit -O-Dc\+\+ dh_installmenu -O-Dc\+\+ dh_installmime -O-Dc\+\+ dh_installmodules -O-Dc\+\+ dh_installlogcheck -O-Dc\+\+ dh_installlogrotate -O-Dc\+\+ dh_installpam -O-Dc\+\+ dh_installppp -O-Dc\+\+ dh_installudev -O-Dc\+\+ dh_installgsettings -O-Dc\+\+ dh_bugfiles -O-Dc\+\+ dh_ucf -O-Dc\+\+ dh_lintian -O-Dc\+\+ dh_gconf -O-Dc\+\+ dh_icons -O-Dc\+\+ dh_perl -O-Dc\+\+ dh_usrlocal -O-Dc\+\+ dh_link -O-Dc\+\+ dh_installwm -O-Dc\+\+ dh_installxfonts -O-Dc\+\+ dh_strip_nondeterminism -O-Dc\+\+ dh_compress -O-Dc\+\+ dh_fixperms -O-Dc\+\+ dh_strip -O-Dc\+\+ dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: ncbi-blast+ dh_strip debug symbol extraction: packages to act on: ncbi-blast+ dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package ncbi-blast+: unused substitution variable ${perl:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -O-Dc\+\+ dh_shlibdeps -O-Dc\+\+ dh_installdeb -O-Dc\+\+ dh_gencontrol -O-Dc\+\+ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: ncbi-blast+ dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package ncbi-blast+ (pkgdir debian/ncbi-blast+, ddeb package dir debian/ncbi-blast+-dbgsym) dh_gencontrol debug symbol wrapper: building ncbi-blast+-dbgsym_2.4.0-3_amd64.ddeb dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.4.0-3_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile ncbi-blast+-dbgsym_2.4.0-3_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -O-Dc\+\+ dh_builddeb -O-Dc\+\+ INFO: pkgstriptranslations version 130 INFO: pkgstriptranslations version 130 pkgstriptranslations: processing ncbi-blast+ (in debian/ncbi-blast+); do_strip: , oemstrip: pkgstriptranslations: processing ncbi-blast+-legacy (in debian/ncbi-blast+-legacy); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+/DEBIAN/control, package ncbi-blast+, directory debian/ncbi-blast+ pkgstripfiles: Truncating usr/share/doc/ncbi-blast+/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncbi-blast+ ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.4.0-3_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+-legacy/DEBIAN/control, package ncbi-blast+-legacy, directory debian/ncbi-blast+-legacy Searching for duplicated docs in dependency ncbi-blast+... symlinking changelog.Debian.gz in ncbi-blast+-legacy to file in ncbi-blast+ pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncbi-blast+-legacy ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncbi-blast+-legacy' in '../ncbi-blast+-legacy_2.4.0-3_all.deb'. dpkg-genchanges --build=any,all -mLaunchpad Build Daemon >../ncbi-blast+_2.4.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build ncbi-blast+-2.4.0 dpkg-buildpackage: info: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160806-1756 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ ncbi-blast+_2.4.0-3_amd64.changes: ────────────────────────────────── Format: 1.8 Date: Fri, 05 Aug 2016 19:47:24 -0400 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy Architecture: amd64 all Version: 2.4.0-3 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Aaron M. Ucko Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 833538 833539 833541 Changes: ncbi-blast+ (2.4.0-3) unstable; urgency=medium . * debian/rules: - Properly build (but don't install) run_with_lock. (Closes: #833538.) - Comment out nostrip check, which yielded a useless dbgsym package. * Reinstate and refresh the hurd_fixes patch, which mostly still applies. (Closes: #833539.) * Add a new support_x32 patch to avoid picking up wrong inline assembly. (Closes: #833541.) Checksums-Sha1: 19f07e291b0f440406459703dee5d8668b218078 104242778 ncbi-blast+-dbgsym_2.4.0-3_amd64.ddeb b49eff265ab9c491473dfdcc4b883f46869ea685 4494 ncbi-blast+-legacy_2.4.0-3_all.deb 3102afeb03a3aa24eb3310a27832951884c11062 9090054 ncbi-blast+_2.4.0-3_amd64.deb Checksums-Sha256: ccab72e66eba3d87657f677f5e684ad6b860448427099f3f255d28fd266ae382 104242778 ncbi-blast+-dbgsym_2.4.0-3_amd64.ddeb 85c1d4e3306f2adc6e80fd5adf6ff2882d8fde51237a26fc025f13e2f85aa444 4494 ncbi-blast+-legacy_2.4.0-3_all.deb 02dc773dbce96e2d8c78c39d7dc16d4e1ac258366dcba34f9253503decc136cc 9090054 ncbi-blast+_2.4.0-3_amd64.deb Files: bc85e74afc4acc12dcfc807c2c75f296 104242778 science extra ncbi-blast+-dbgsym_2.4.0-3_amd64.ddeb 4596ad04c437bbcabfa856d386c8cac5 4494 science optional ncbi-blast+-legacy_2.4.0-3_all.deb a3b1720a2b4c07ef85fdc3e166a5dba4 9090054 science optional ncbi-blast+_2.4.0-3_amd64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ ncbi-blast+-legacy_2.4.0-3_all.deb ────────────────────────────────── new debian package, version 2.0. size 4494 bytes: control archive=665 bytes. 686 bytes, 19 lines control 147 bytes, 2 lines md5sums Package: ncbi-blast+-legacy Source: ncbi-blast+ Version: 2.4.0-3 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 31 Depends: ncbi-blast+ Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: NCBI Blast legacy call script This package adds some fake scripts to call NCBI+ programs with the NCBI blast command line. It makes use of the legacy_blast script in ncbi-blast+ package. . To use those scripts, /usr/share/ncbi-blast+/bin must be added to the PATH. drwxr-xr-x root/root 0 2016-08-05 23:47 ./ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/doc/ncbi-blast+-legacy/ lrwxrwxrwx root/root 0 2016-08-05 23:47 ./usr/share/doc/ncbi-blast+-legacy/changelog.Debian.gz -> ../ncbi-blast+/changelog.Debian.gz -rw-r--r-- root/root 9215 2016-08-02 15:48 ./usr/share/doc/ncbi-blast+-legacy/copyright drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/ lrwxrwxrwx root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/bl2seq -> legacy.sh lrwxrwxrwx root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/blastall -> legacy.sh lrwxrwxrwx root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/blastpgp -> legacy.sh lrwxrwxrwx root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/fastacmd -> legacy.sh lrwxrwxrwx root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/formatdb -> legacy.sh -rwxr-xr-x root/root 65 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/legacy.sh lrwxrwxrwx root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/megablast -> legacy.sh lrwxrwxrwx root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/rpsblast -> legacy.sh lrwxrwxrwx root/root 0 2016-08-05 23:47 ./usr/share/ncbi-blast+/bin/seedtop -> legacy.sh ncbi-blast+_2.4.0-3_amd64.deb ───────────────────────────── new debian package, version 2.0. size 9090054 bytes: control archive=3769 bytes. 1286 bytes, 25 lines control 6606 bytes, 100 lines md5sums Package: ncbi-blast+ Version: 2.4.0-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 38173 Depends: ncbi-data, python, perl:any, libbz2-1.0, libc6 (>= 2.15), libgcc1 (>= 1:3.4), libgomp1 (>= 4.9), libpcre3, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. drwxr-xr-x root/root 0 2016-08-05 23:47 ./ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/ drwxr-xr-x root/root 0 2016-08-05 23:47 ./usr/bin/ -rwxr-xr-x root/root 231920 2016-08-05 23:47 ./usr/bin/blast_formatter -rwxr-xr-x root/root 96608 2016-08-05 23:47 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 145680 2016-08-05 23:47 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 121176 2016-08-05 23:47 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 67752 2016-08-05 23:47 ./usr/bin/blastdbcp -rwxr-xr-x root/root 195064 2016-08-05 23:47 ./usr/bin/blastn -rwxr-xr-x root/root 190968 2016-08-05 23:47 ./usr/bin/blastp -rwxr-xr-x root/root 190968 2016-08-05 23:47 ./usr/bin/blastx -rwxr-xr-x root/root 63664 2016-08-05 23:47 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 223736 2016-08-05 23:47 ./usr/bin/deltablast -rwxr-xr-x root/root 39144 2016-08-05 23:47 ./usr/bin/dustmasker -rwxr-xr-x root/root 26792 2016-08-05 23:47 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 51346 2016-08-05 23:47 ./usr/bin/legacy_blast -rwxr-xr-x root/root 182624 2016-08-05 23:47 ./usr/bin/makeblastdb -rwxr-xr-x root/root 55456 2016-08-05 23:47 ./usr/bin/makembindex -rwxr-xr-x root/root 145760 2016-08-05 23:47 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 227832 2016-08-05 23:47 ./usr/bin/psiblast -rwxr-xr-x root/root 190968 2016-08-05 23:47 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 190968 2016-08-05 23:47 ./usr/bin/rpstblastn -rwxr-xr-x root/root 195064 2016-08-05 23:47 ./usr/bin/seedtop+ -rwxr-xr-x root/root 43248 2016-08-05 23:47 ./usr/bin/segmasker -rwxr-xr-x root/root 43184 2016-08-05 23:47 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 203256 2016-08-05 23:47 ./usr/bin/tblastn -rwxr-xr-x root/root 190968 2016-08-05 23:47 ./usr/bin/tblastx -rwxr-xr-x root/root 12487 2016-08-05 23:47 ./usr/bin/update_blastdb -rwxr-xr-x root/root 51360 2016-08-05 23:47 ./usr/bin/windowmasker -rwxr-xr-x root/root 5950 2016-08-05 23:47 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└──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 2943356 Build-Time: 2218 Distribution: yakkety-proposed Host Architecture: amd64 Install-Time: 17 Job: ncbi-blast+_2.4.0-3.dsc Machine Architecture: amd64 Package: ncbi-blast+ Package-Time: 2238 Source-Version: 2.4.0-3 Space: 2943356 Status: successful Version: 2.4.0-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160806-1756 Build needed 00:37:18, 2943356k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-10573698'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-10573698/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-10573698'] Unmounting chroot for build PACKAGEBUILD-10573698... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-10573698'] Removing build PACKAGEBUILD-10573698