RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lcy01-11 3.13.0-74-generic #118-Ubuntu SMP Thu Dec 17 22:52:10 UTC 2015 x86_64 Buildd toolchain package versions: launchpad-buildd_135 python-lpbuildd_135 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.5 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 28 Dec 23:12:01 ntpdate[1618]: adjust time server 10.211.37.1 offset -0.064970 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8768837', '/home/buildd/filecache-default/9ecf9f6874f6384eb09ac1764090b184b3b8f2b8'] Unpacking chroot for build PACKAGEBUILD-8768837 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8768837'] Mounting chroot for build PACKAGEBUILD-8768837 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8768837', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8768837 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8768837', 'i386'] Updating debian chroot for build PACKAGEBUILD-8768837 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [73.5 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [73.5 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [227 kB] Get:5 http://ftpmaster.internal xenial/main i386 Packages [1460 kB] Get:6 http://ftpmaster.internal xenial/universe i386 Packages [7086 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [848 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4757 kB] Get:9 http://ftpmaster.internal xenial-security/main i386 Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe i386 Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main i386 Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe i386 Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main i386 Packages [116 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe i386 Packages [384 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [67.3 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [241 kB] Fetched 15.6 MB in 9s (1695 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: perl-modules* The following NEW packages will be installed: libapt-pkg5.0 libisl15 libperl5.22 libprocps4 perl-modules-5.22 The following packages will be upgraded: advancecomp apt apt-transport-https base-files binutils bsdutils cpp cpp-5 debconf diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libffi6 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmount1 libmpfr4 libmpx0 libncurses5 libncursesw5 libp11-kit0 libpng12-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libuuid1 linux-libc-dev lsb-base mount multiarch-support ncurses-base ncurses-bin openssl perl perl-base pkg-create-dbgsym pkgbinarymangler procps systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 108 upgraded, 5 newly installed, 1 to remove and 0 not upgraded. Need to get 131 MB of archives. After this operation, 284 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files i386 9.4ubuntu3 [62.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils i386 1:2.27.1-1ubuntu3 [53.7 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils i386 1:3.3-3 [158 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg i386 1.18.3ubuntu1 [2109 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main libc6-dev i386 2.21-0ubuntu5 [1608 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libc-dev-bin i386 2.21-0ubuntu5 [66.5 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial-proposed/main linux-libc-dev i386 4.3.0-5.16 [819 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 i386 1:2.24-12 [13.2 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libc-bin i386 2.21-0ubuntu5 [1126 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 i386 5.3.1-4ubuntu1 [58.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libitm1 i386 5.3.1-4ubuntu1 [30.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 i386 5.3.1-4ubuntu1 [9672 B] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 i386 5.3.1-4ubuntu1 [271 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base i386 5.3.1-4ubuntu1 [16.3 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 i386 1:5.3.1-4ubuntu1 [46.4 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 i386 5.3.1-4ubuntu1 [111 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libcilkrts5 i386 5.3.1-4ubuntu1 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main libmpx0 i386 5.3.1-4ubuntu1 [11.1 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libquadmath0 i386 5.3.1-4ubuntu1 [203 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 i386 0.15-3 [588 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 i386 5.3.1-4ubuntu1 [28.4 MB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 i386 5.3.1-4ubuntu1 [39.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main binutils i386 2.25.90.20151211-0ubuntu2 [2480 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 i386 5.3.1-4ubuntu1 [30.4 MB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 i386 5.3.1-4ubuntu1 [28.6 MB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev i386 5.3.1-4ubuntu1 [2239 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev i386 5.3.1-4ubuntu1 [1453 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 i386 5.3.1-4ubuntu1 [417 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 i386 2:6.1.0+dfsg-2 [246 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main libmpfr4 i386 3.1.3-2 [193 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main libc6 i386 2.21-0ubuntu5 [4087 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs i386 1.42.13-1ubuntu1 [208 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs i386 1.42.13-1ubuntu1 [793 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main findutils i386 4.4.2-10 [253 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep i386 2.22-1 [154 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main hostname i386 3.16ubuntu2 [11.8 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main init i386 1.24ubuntu2 [3966 B] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 i386 2.27.1-1ubuntu3 [67.8 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 i386 2.27.1-1ubuntu3 [15.9 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 i386 2.27.1-1ubuntu3 [120 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 i386 2.27.1-1ubuntu3 [154 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils i386 2.88dsf-59.2ubuntu3 [26.1 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main initscripts i386 2.88dsf-59.2ubuntu3 [24.8 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main util-linux i386 2.27.1-1ubuntu3 [873 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 i386 228-2ubuntu2 [59.5 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main udev i386 228-2ubuntu2 [983 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 i386 228-2ubuntu2 [219 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main systemd i386 228-2ubuntu2 [3515 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libselinux1 i386 2.4-3 [61.0 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo5 i386 6.0+20151024-2ubuntu1 [77.6 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5 i386 6.0+20151024-2ubuntu1 [101 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libncursesw5 i386 6.0+20151024-2ubuntu1 [126 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libprocps4 i386 2:3.3.10-4ubuntu1 [33.7 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main procps i386 2:3.3.10-4ubuntu1 [221 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libapparmor1 i386 2.10-0ubuntu9 [30.5 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.4-4ubuntu1 [3892 B] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 i386 1:2.4.4-4ubuntu1 [37.4 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 i386 2.27.1-1ubuntu3 [125 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main libseccomp2 i386 2.2.3-2ubuntu3 [33.1 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin i386 1:2.24-12 [20.5 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20150917ubuntu1 [13.4 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main mount i386 2.27.1-1ubuntu3 [126 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-bin i386 6.0+20151024-2ubuntu1 [138 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial-proposed/main perl-modules-5.22 all 5.22.1-3 [2648 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libperl5.22 i386 5.22.1-3 [2976 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial-proposed/main perl i386 5.22.1-3 [237 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial-proposed/main perl-base i386 5.22.1-3 [1367 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main tar i386 1.28-2.1 [220 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libapt-pkg5.0 i386 1.1.9 [717 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt i386 1.1.9 [980 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main gpgv i386 1.4.19-6ubuntu1 [172 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main gnupg i386 1.4.19-6ubuntu1 [647 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-base all 6.0+20151024-2ubuntu1 [17.1 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv i386 228-2ubuntu2 [15.1 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main libffi6 i386 3.2.1-4 [17.0 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main libp11-kit0 i386 0.23.2-3 [109 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 i386 4.7-3 [45.0 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 i386 3.3.18-1ubuntu1 [540 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libldap-2.4-2 i386 2.4.41+dfsg-1ubuntu3 [172 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 i386 1.42.13-1ubuntu1 [65.9 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 i386 0.198ubuntu1 [6444 B] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libdevmapper1.02.1 i386 2:1.02.110-1ubuntu2 [151 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 i386 1.21-1 [37.3 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcrypt20 i386 1.6.4-4 [320 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 i386 2.4-2 [204 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B] Get:89 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 i386 2.4-3 [86.8 kB] Get:90 http://ftpmaster.internal/ubuntu/ xenial/main libss2 i386 1.42.13-1ubuntu1 [70.6 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main multiarch-support i386 2.21-0ubuntu5 [7182 B] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 i386 1.2.54-1 [122 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main libsqlite3-0 i386 3.9.2-1 [419 kB] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 i386 1.0.2e-1ubuntu1 [908 kB] Get:95 http://ftpmaster.internal/ubuntu/ xenial/main dmsetup i386 2:1.02.110-1ubuntu2 [60.9 kB] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 i386 1.13.2+dfsg-4 [129 kB] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 i386 1.13.2+dfsg-4 [298 kB] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 i386 1.13.2+dfsg-4 [32.0 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 i386 1.13.2+dfsg-4 [83.4 kB] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main libkeyutils1 i386 1.5.9-8ubuntu1 [10.2 kB] Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 i386 1.32-3ubuntu1 [46.6 kB] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls i386 7.45.0-1ubuntu1 [203 kB] Get:103 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt-transport-https i386 1.1.9 [27.1 kB] Get:104 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 i386 1.10.6-1ubuntu1 [173 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial/main openssl i386 1.0.2e-1ubuntu1 [505 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp i386 1.20-1 [163 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/main cpp i386 4:5.2.1-16ubuntu2 [27.6 kB] Get:108 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:109 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main gcc i386 4:5.2.1-16ubuntu2 [5226 B] Get:111 http://ftpmaster.internal/ubuntu/ xenial/main g++ i386 4:5.2.1-16ubuntu2 [1508 B] Get:112 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] Get:113 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 125 [41.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 131 MB in 9s (13.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11677 files and directories currently installed.) Preparing to unpack .../base-files_9.4ubuntu3_i386.deb ... Unpacking base-files (9.4ubuntu3) over (7.2ubuntu11) ... Setting up base-files (9.4ubuntu3) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... 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Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11676 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.13-1ubuntu1_i386.deb ... Unpacking e2fslibs:i386 (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up e2fslibs:i386 (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11686 files and directories currently installed.) Preparing to unpack .../udev_228-2ubuntu2_i386.deb ... Unpacking udev (228-2ubuntu2) over (225-1ubuntu9) ... Preparing to unpack .../libsystemd0_228-2ubuntu2_i386.deb ... Unpacking libsystemd0:i386 (228-2ubuntu2) over (225-1ubuntu9) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libsystemd0:i386 (228-2ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11686 files and directories currently installed.) Preparing to unpack .../systemd_228-2ubuntu2_i386.deb ... Unpacking systemd (228-2ubuntu2) over (225-1ubuntu9) ... Setting up systemd (228-2ubuntu2) ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11687 files and directories currently installed.) Preparing to unpack .../libselinux1_2.4-3_i386.deb ... Unpacking libselinux1:i386 (2.4-3) over (2.3-2build1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libselinux1:i386 (2.4-3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11687 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20151024-2ubuntu1_i386.deb ... Unpacking libtinfo5:i386 (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libtinfo5:i386 (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11687 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20151024-2ubuntu1_i386.deb ... Unpacking libncursesw5:i386 (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncursesw5:i386 (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Selecting previously unselected package libprocps4:i386. (Reading database ... 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Setting up libcilkrts5:i386 (5.3.1-4ubuntu1) ... Setting up libmpx0:i386 (5.3.1-4ubuntu1) ... Setting up libquadmath0:i386 (5.3.1-4ubuntu1) ... Setting up libgmp10:i386 (2:6.1.0+dfsg-2) ... Setting up libisl15:i386 (0.15-3) ... Setting up libmpfr4:i386 (3.1.3-2) ... Setting up cpp-5 (5.3.1-4ubuntu1) ... Setting up libcc1-0:i386 (5.3.1-4ubuntu1) ... Setting up binutils (2.25.90.20151211-0ubuntu2) ... Setting up libgcc-5-dev:i386 (5.3.1-4ubuntu1) ... Setting up gcc-5 (5.3.1-4ubuntu1) ... Setting up libstdc++-5-dev:i386 (5.3.1-4ubuntu1) ... Setting up g++-5 (5.3.1-4ubuntu1) ... Setting up libprocps4:i386 (2:3.3.10-4ubuntu1) ... Setting up procps (2:3.3.10-4ubuntu1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (228-2ubuntu2) ... Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. virtio network devices detected, disabling predictable interface names in /etc/systemd/network/50-virtio-kernel-names.link Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Removing obsolete conffile /etc/init.d/lvm2 ... Setting up perl-modules-5.22 (5.22.1-3) ... Setting up libperl5.22:i386 (5.22.1-3) ... Setting up perl (5.22.1-3) ... Setting up apt (1.1.9) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Setting up libffi6:i386 (3.2.1-4) ... Setting up libp11-kit0:i386 (0.23.2-3) ... Setting up libtasn1-6:i386 (4.7-3) ... Setting up libgnutls-deb0-28:i386 (3.3.18-1ubuntu1) ... Setting up libldap-2.4-2:i386 (2.4.41+dfsg-1ubuntu3) ... Setting up libpng12-0:i386 (1.2.54-1) ... Setting up libsqlite3-0:i386 (3.9.2-1) ... Setting up libssl1.0.0:i386 (1.0.2e-1ubuntu1) ... Setting up dmsetup (2:1.02.110-1ubuntu2) ... Setting up libkrb5support0:i386 (1.13.2+dfsg-4) ... Setting up libk5crypto3:i386 (1.13.2+dfsg-4) ... Setting up libkeyutils1:i386 (1.5.9-8ubuntu1) ... Setting up libkrb5-3:i386 (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:i386 (1.13.2+dfsg-4) ... Setting up libidn11:i386 (1.32-3ubuntu1) ... Setting up libcurl3-gnutls:i386 (7.45.0-1ubuntu1) ... Setting up apt-transport-https (1.1.9) ... Setting up libdbus-1-3:i386 (1.10.6-1ubuntu1) ... Setting up openssl (1.0.2e-1ubuntu1) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.2.1-16ubuntu2) ... Setting up libdpkg-perl (1.18.3ubuntu1) ... Setting up dpkg-dev (1.18.3ubuntu1) ... Setting up gcc (4:5.2.1-16ubuntu2) ... Setting up g++ (4:5.2.1-16ubuntu2) ... Setting up pkg-create-dbgsym (0.70) ... Setting up pkgbinarymangler (125) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-2ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8768837', 'i386', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=i386', '--dist=xenial-proposed', '--purge=never', '--nolog', 'ncbi-blast+_2.2.31-3.dsc'] Initiating build PACKAGEBUILD-8768837 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-74-generic #118-Ubuntu SMP Thu Dec 17 22:52:10 UTC 2015 i686 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lcy01-11.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ ncbi-blast+ 2.2.31-3 (i386) 28 Dec 2015 23:13 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: ncbi-blast+ Version: 2.2.31-3 Source Version: 2.2.31-3 Distribution: xenial-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-O5zu5R' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8768837/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── ncbi-blast+_2.2.31-3.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive/sbuild-build-depends-core-dummy.deb'. Get:1 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ InRelease Ign:1 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ InRelease Get:2 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Release [2119 B] Get:2 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Release [2119 B] Get:3 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Release.gpg Ign:3 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Release.gpg Get:4 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Sources [208 B] Get:5 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Packages [527 B] Ign:4 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Sources Ign:5 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Packages Get:4 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Sources [208 B] Get:5 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Packages [527 B] Reading package lists... W: The repository 'file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/768 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 file:/build/ncbi-blast+-O5zu5R/resolver-kGtwx6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12292 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), autotools-dev (>= 20100122), debhelper (>= 9), dpkg-dev (>= 1.16.1), libboost-test-dev, libbz2-dev, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), autotools-dev (>= 20100122), debhelper (>= 9), dpkg-dev (>= 1.16.1), libboost-test-dev, libbz2-dev, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Get:1 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ InRelease Ign:1 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ InRelease Get:2 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Release [2119 B] Get:2 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Release [2119 B] Get:3 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Release.gpg Ign:3 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Release.gpg Get:4 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Sources [488 B] Get:5 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Packages [735 B] Ign:4 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Sources Get:4 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Sources [488 B] Ign:5 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Packages Get:5 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Packages [735 B] Reading package lists... W: The repository 'file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install ncbi-blast+ build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libboost-test-dev libboost-test1.58-dev libboost-test1.58.0 libboost1.58-dev libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf time zlib1g-dev Suggested packages: wamerican | wordlist whois vacation dh-make gettext-doc autopoint groff libboost1.58-doc libboost-atomic1.58-dev libboost-chrono1.58-dev libboost-context1.58-dev libboost-coroutine1.58-dev libboost-date-time1.58-dev libboost-exception1.58-dev libboost-filesystem1.58-dev libboost-graph1.58-dev libboost-graph-parallel1.58-dev libboost-iostreams1.58-dev libboost-locale1.58-dev libboost-log1.58-dev libboost-math1.58-dev libboost-mpi1.58-dev libboost-mpi-python1.58-dev libboost-program-options1.58-dev libboost-python1.58-dev libboost-random1.58-dev libboost-regex1.58-dev libboost-serialization1.58-dev libboost-signals1.58-dev libboost-system1.58-dev libboost-thread1.58-dev libboost-timer1.58-dev libboost-wave1.58-dev libboost1.58-tools-dev libmpfrc++-dev libntl-dev less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libboost-test-dev libboost-test1.58-dev libboost-test1.58.0 libboost1.58-dev libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 22.5 MB/22.5 MB of archives. After this operation, 171 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-ncbi-blast+-dummy Authentication warning overridden. Get:1 file:/build/ncbi-blast+-O5zu5R/resolver-dhs2jC/apt_archive ./ sbuild-build-depends-ncbi-blast+-dummy 0.invalid.0 [980 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main i386 groff-base i386 1.22.3-4 [1152 kB] Get:3 http://ftpmaster.internal/ubuntu xenial/main i386 bsdmainutils i386 9.0.6ubuntu1 [175 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main i386 libpipeline1 i386 1.4.1-1 [26.7 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main i386 man-db i386 2.7.5-1 [865 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main i386 libpcrecpp0v5 i386 2:8.35-7.1ubuntu1 [16.2 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main i386 libunistring0 i386 0.9.3-5.2ubuntu1 [277 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main i386 libmagic1 i386 1:5.25-2ubuntu1 [222 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main i386 file i386 1:5.25-2ubuntu1 [21.1 kB] Get:10 http://ftpmaster.internal/ubuntu xenial/main i386 libasprintf0v5 i386 0.19.6-1ubuntu1 [6972 B] Get:11 http://ftpmaster.internal/ubuntu xenial/main i386 gettext-base i386 0.19.6-1ubuntu1 [49.5 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main i386 libglib2.0-0 i386 2.47.3-3 [1180 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main i386 libicu55 i386 55.1-6ubuntu1 [7755 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main i386 libxml2 i386 2.9.2+zdfsg1-4ubuntu2 [730 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main i386 time i386 1.7-25.1 [26.0 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main i386 autotools-dev all 20150820.1 [39.8 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main i386 libcroco3 i386 0.6.11-1 [87.8 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main i386 gettext i386 0.19.6-1ubuntu1 [1072 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main i386 po-debconf all 1.0.18 [234 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main i386 libarchive-zip-perl all 1.53-1 [87.0 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main i386 libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:23 http://ftpmaster.internal/ubuntu xenial/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main i386 dh-strip-nondeterminism all 0.014-1 [5596 B] Get:25 http://ftpmaster.internal/ubuntu xenial/main i386 debhelper all 9.20151126ubuntu1 [741 kB] Get:26 http://ftpmaster.internal/ubuntu xenial/main i386 libboost1.58-dev i386 1.58.0+dfsg-3.1ubuntu1 [6234 kB] Get:27 http://ftpmaster.internal/ubuntu xenial/main i386 libboost-test1.58.0 i386 1.58.0+dfsg-3.1ubuntu1 [184 kB] Get:28 http://ftpmaster.internal/ubuntu xenial/main i386 libboost-test1.58-dev i386 1.58.0+dfsg-3.1ubuntu1 [232 kB] Get:29 http://ftpmaster.internal/ubuntu xenial/main i386 libboost-test-dev i386 1.58.0.0ubuntu1 [2836 B] Get:30 http://ftpmaster.internal/ubuntu xenial/main i386 libbz2-dev i386 1.0.6-8 [28.7 kB] Get:31 http://ftpmaster.internal/ubuntu xenial/main i386 libpcre16-3 i386 2:8.35-7.1ubuntu1 [142 kB] Get:32 http://ftpmaster.internal/ubuntu xenial/main i386 libpcre32-3 i386 2:8.35-7.1ubuntu1 [134 kB] Get:33 http://ftpmaster.internal/ubuntu xenial/main i386 libpcre3-dev i386 2:8.35-7.1ubuntu1 [526 kB] Get:34 http://ftpmaster.internal/ubuntu xenial/main i386 zlib1g-dev i386 1:1.2.8.dfsg-2ubuntu4 [167 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.5 MB in 0s (38.9 MB/s) Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12292 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-4_i386.deb ... Unpacking groff-base (1.22.3-4) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_i386.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../libpipeline1_1.4.1-1_i386.deb ... 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Unpacking libpcre3-dev:i386 (2:8.35-7.1ubuntu1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu4_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.8.dfsg-2ubuntu4) ... Selecting previously unselected package sbuild-build-depends-ncbi-blast+-dummy. Preparing to unpack .../sbuild-build-depends-ncbi-blast+-dummy.deb ... Unpacking sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:i386 (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpcrecpp0v5:i386 (2:8.35-7.1ubuntu1) ... Setting up libunistring0:i386 (0.9.3-5.2ubuntu1) ... Setting up libmagic1:i386 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libasprintf0v5:i386 (0.19.6-1ubuntu1) ... Setting up gettext-base (0.19.6-1ubuntu1) ... Setting up libglib2.0-0:i386 (2.47.3-3) ... No schema files found: doing nothing. Setting up libicu55:i386 (55.1-6ubuntu1) ... Setting up libxml2:i386 (2.9.2+zdfsg1-4ubuntu2) ... Setting up time (1.7-25.1) ... Setting up autotools-dev (20150820.1) ... Setting up libcroco3:i386 (0.6.11-1) ... Setting up gettext (0.19.6-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.53-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libboost1.58-dev:i386 (1.58.0+dfsg-3.1ubuntu1) ... Setting up libboost-test1.58.0:i386 (1.58.0+dfsg-3.1ubuntu1) ... Setting up libboost-test1.58-dev:i386 (1.58.0+dfsg-3.1ubuntu1) ... Setting up libboost-test-dev:i386 (1.58.0.0ubuntu1) ... Setting up libbz2-dev:i386 (1.0.6-8) ... Setting up libpcre16-3:i386 (2:8.35-7.1ubuntu1) ... Setting up libpcre32-3:i386 (2:8.35-7.1ubuntu1) ... Setting up libpcre3-dev:i386 (2:8.35-7.1ubuntu1) ... Setting up zlib1g-dev:i386 (1:1.2.8.dfsg-2ubuntu4) ... Setting up debhelper (9.20151126ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.014-1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-74-generic amd64 (i686) Toolchain package versions: binutils_2.25.90.20151211-0ubuntu2 dpkg-dev_1.18.3ubuntu1 g++-5_5.3.1-4ubuntu1 gcc-5_5.3.1-4ubuntu1 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.3.1-4ubuntu1 libstdc++6_5.3.1-4ubuntu1 linux-libc-dev_4.3.0-5.16 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.9 apt-transport-https_1.1.9 autotools-dev_20150820.1 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151211-0ubuntu2 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.3.1-4ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151126ubuntu1 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu2 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-16ubuntu2 g++-5_5.3.1-4ubuntu1 gcc_4:5.2.1-16ubuntu2 gcc-5_5.3.1-4ubuntu1 gcc-5-base_5.3.1-4ubuntu1 gettext_0.19.6-1ubuntu1 gettext-base_0.19.6-1ubuntu1 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu9 libapt-pkg4.16_1.0.10.2ubuntu1 libapt-pkg5.0_1.1.9 libarchive-zip-perl_1.53-1 libasan2_5.3.1-4ubuntu1 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.6-1ubuntu1 libatomic1_5.3.1-4ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libboost-test-dev_1.58.0.0ubuntu1 libboost-test1.58-dev_1.58.0+dfsg-3.1ubuntu1 libboost-test1.58.0_1.58.0+dfsg-3.1ubuntu1 libboost1.58-dev_1.58.0+dfsg-3.1ubuntu1 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.21-0ubuntu5 libc-dev-bin_2.21-0ubuntu5 libc6_2.21-0ubuntu5 libc6-dev_2.21-0ubuntu5 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-4ubuntu1 libcilkrts5_5.3.1-4ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1ubuntu1 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu2 libdpkg-perl_1.18.3ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.3.1-4ubuntu1 libgcc1_1:5.3.1-4ubuntu1 libgcrypt20_1.6.4-4 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.3-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.3.1-4ubuntu1 libgpg-error0_1.21-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-6ubuntu1 libidn11_1.32-3ubuntu1 libisl13_0.14-2 libisl15_0.15-3 libitm1_5.3.1-4ubuntu1 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-8ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libmpx0_5.3.1-4ubuntu1 libncurses5_6.0+20151024-2ubuntu1 libncursesw5_6.0+20151024-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre16-3_2:8.35-7.1ubuntu1 libpcre3_2:8.35-7.1ubuntu1 libpcre3-dev_2:8.35-7.1ubuntu1 libpcre32-3_2:8.35-7.1ubuntu1 libpcrecpp0v5_2:8.35-7.1ubuntu1 libperl5.22_5.22.1-3 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_1:3.3.9-1ubuntu8 libprocps4_2:3.3.10-4ubuntu1 libquadmath0_5.3.1-4ubuntu1 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu3 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.9.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2e-1ubuntu1 libstdc++-5-dev_5.3.1-4ubuntu1 libstdc++6_5.3.1-4ubuntu1 libsystemd0_228-2ubuntu2 libtasn1-6_4.7-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2ubuntu1 libubsan0_5.3.1-4ubuntu1 libudev1_228-2ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu2 linux-libc-dev_4.3.0-5.16 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu5 ncurses-base_6.0+20151024-2ubuntu1 ncurses-bin_6.0+20151024-2ubuntu1 openssl_1.0.2e-1ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.22.1-3 perl-base_5.22.1-3 perl-modules-5.22_5.22.1-3 pkg-create-dbgsym_0.70 pkgbinarymangler_125 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu1 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu2 systemd-sysv_228-2ubuntu2 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 time_1.7-25.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-2ubuntu2 util-linux_2.27.1-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Mon Dec 28 15:54:50 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.2.31-3.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.2.31 dpkg-source: info: unpacking ncbi-blast+_2.2.31.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.2.31-3.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying fix_compilation dpkg-source: info: applying allow_gcc5 dpkg-source: info: applying fix_kfreebsd_ftbs.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31 SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package ncbi-blast+ dpkg-buildpackage: source version 2.2.31-3 dpkg-buildpackage: source distribution unstable dpkg-source --before-build ncbi-blast+-2.2.31 dpkg-buildpackage: host architecture i386 fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:86: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' debian/rules build-arch dh build-arch -Dc++ --with autotools_dev dh_testdir -a -O-Dc\+\+ dh_autotools-dev_updateconfig -a -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... 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return type of localtime_r... struct checking whether pthread mutexes are available... yes checking for vprintf... yes checking for _doprnt... no checking for euidaccess... yes checking for atoll... yes checking for basename... yes checking for lchown... yes checking for fseeko... yes checking for getgrouplist... yes checking for getpagesize... yes checking for getpass... yes checking for getpassphrase... no checking for getpwuid... yes checking for getrusage... yes checking for gettimeofday... yes checking for getuid... yes checking for memrchr... yes checking for readpassphrase... no checking for readv... yes checking for usleep... yes checking for asprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for select... yes checking for statfs... yes checking for statvfs... yes checking for strcasecmp... yes checking for strlcat... no checking for strlcpy... no checking for strdup... yes checking for strndup... yes checking for strtok_r... yes checking for sysmp... no checking for timegm... yes checking for utimes... yes checking for lutimes... yes checking for writev... yes checking return type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether char is unsigned... no checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 4 checking for long double... yes checking size of long double... 12 checking for long long... yes checking size of long long... 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 4 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes checking for struct tm.__tm_zone... no checking whether function prototypes can use throw(...)... yes checking for obsolete string::compare() syntax... no checking whether the auto_ptr template class works... yes checking for min/max templates... yes checking whether new C++ streams have ios_base::... yes checking for ios(_base)::register_callback... yes checking for std::char_traits::... yes checking for SysV semaphores... yes checking for union semun... no checking which way the stack grows... down checking whether the preprocessor supports C99-style variadic macros... yes checking whether the preprocessor supports GNU-style variadic macros... yes checking syntax for marking deprecated functions... __attribute__((__deprecated__)) checking how to force inlining... inline __attribute__((always_inline)) checking whether the C compiler supports __attribute__((destructor))... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary checking whether the C compiler supports C99 restrict... __restrict__ checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for marking functions that never return... __attribute__((__noreturn__)) checking syntax for declaring thread-local variables... __thread checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -msse4.1... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -maes... yes checking whether in-house NCBI resources are available... no checking for gethostbyname in -lnsl... yes checking for connect in -lsocket... no checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... -lcrypt checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for nanosleep... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libgcrypt-config... no checking for libgcrypt... no checking for libgnutls-config... no checking for libgnutls... no checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.3... no checking for python2.4... no checking for python2.5... no checking for perl... /usr/bin/perl checking for usable Perl libraries... no basename: missing operand Try 'basename --help' for more information. checking Boost version... checking for Boost library name tag... -gcc53-mt- (autodetected) checking for Boost.Regex... no checking for Boost.Spirit... yes checking for Boost.System... no checking for Boost.Filesystem... no checking for Boost.Iostreams... no checking for Boost.Program-Options... no checking for Boost.Test... included-only checking for Boost.Threads... no checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for wx-config... no checking for wxWidgets... no checking for FastCGI libraries... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories... no checking for ORBacus... no checking for ICU... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for libexslt... no checking for Xerces-C++... no checking for Xalan-C++... no checking for Zorba... no checking for libsqlite3... no checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking 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********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib TMPL=corelib -w all make[3]: Entering directory 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/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:822:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1790:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:1743:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:924:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:1806:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:924:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:1831:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:924:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:1863:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:924:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:3025:44: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:354:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/test_boost.cpp -o test_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/corelib/teamcity_messages.cpp -o teamcity_messages.o /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_boost.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC test_boost.o teamcity_messages.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_boost.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libtest_boost.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libtest_boost.so /bin/ln -f .test_boost.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' make[2]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' make[2]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util TMPL=util -w all make[3]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/random_gen.cpp -o random_gen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE 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/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/table_printer.cpp -o table_printer.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxutil.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxutil.so /bin/ln -f .xutil.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xutil.dep make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' make[2]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' make[2]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[3]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' make[2]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' make[2]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxregexp.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxregexp.so /bin/ln -f .xregexp.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' make[2]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' make[2]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG 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-Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -ldl -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f project_tree_builder /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GCRYPT GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO MONGODB PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build && make all_r or simply run make in the current directory Alternatively, cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build && make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' debian/rules override_dh_auto_build make[1]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build' /usr/bin/make -w -j --jobserver-fds=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial/datatool' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/composition_adjustment' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/tables' cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/core' /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/core' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/creaders' /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/sequtil' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/creaders' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader' cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/readers' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/util' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io' cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/dustmask' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/winmask' /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/dustmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/winmask' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/readers' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/api' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/api' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/alnmgr' /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/alnmgr' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/cgi' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/html' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format' /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/html' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format' cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/format' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/format' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/cleanup' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/cgi' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/format' /usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/cleanup' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex/makeindex' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/igblast' /usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/format' cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=connect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/simple' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/simple' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect TMPL=connect -w -j --jobserver-fds=3,4 all make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_connect to make__connect_common per /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/.#lock-map. /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/dustmasker' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_util.c -o ncbi_util.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_util.c:34: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_util.c: In function 'CORE_SetLOGFILE_NAME_Ex': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_util.c:139:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, ^ make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/segmask' /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/segmask' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /bin/ln -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split' make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c -o ncbi_socket.o make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test' In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:77: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_DoLog': cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:494:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(112, level, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_DATA' DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:534:13: note: in expansion of macro 'CORE_DATAF_X' CORE_DATAF_X(109, level, data, size, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:567:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(113, level, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:575:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(1, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_InitAPI_': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:852:17: note: in expansion of macro 'CORE_LOG' CORE_LOG(eLOG_Critical, "Secure socket layer (SSL) has not" ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_gethostname': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:164:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:997:13: note: in expansion of macro 'CORE_LOG_ERRNO_EXX' CORE_LOG_ERRNO_EXX(103, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1006:13: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(104, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname_': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1128:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_getlocalhostaddress': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1165:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1191:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(155, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr_': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1321:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1356:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(10, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'x_TryLowerSockFileno': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1465:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(111, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Select_': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1590:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1719:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Poll_': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:1863:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:2008:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_IsConnected_': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:2589:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Recv': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:2770:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Read_': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:2924:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Send': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3277:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_WritePending': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3424:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(12, sock->log != eOff ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Shutdown': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3596:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3631:25: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3695:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Close_': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3758:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3774:21: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3802:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3862:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Connect_': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3962:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(131, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3979:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(142, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:3998:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(22, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4024:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(23, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4068:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(24, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4083:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4094:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4114:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(129, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4155:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(25, sock->log != eOff ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4199:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(26, sock->log != eOff ^ make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Create': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4291:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_CreateOnTop': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4344:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(47, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4367:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(148, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4405:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(48, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4446:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(50, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4460:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4523:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(132, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4544:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4555:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4575:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4590:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_CreateListening': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4642:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(144, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4676:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(34, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4722:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(35, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4778:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4799:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(150, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4850:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(38, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4869:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(37, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4920:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(110, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4934:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(115, eLOG_Note, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_Accept': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:4981:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(39, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5037:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(40, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5096:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(41, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5155:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5166:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5177:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5197:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_CloseListening': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5242:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(44, eLOG_Note, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5271:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(45, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_RecvMsg': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5359:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(20, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5407:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 's_SendMsg': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5442:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5458:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(88, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5467:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(89, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5517:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(90, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5563:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Create': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5606:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5616:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5628:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5638:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5657:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(116, eLOG_Note, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Close': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5719:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(117, eLOG_Note, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'LSOCK_GetOSHandleEx': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:5930:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(46, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_Reconnect': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6118:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(52, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6128:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(53, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6140:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(51, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_Shutdown': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6170:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(54, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6177:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(55, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6185:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(15, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_Wait': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6314:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(56, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6342:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(57, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6356:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(58, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6370:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(59, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6379:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(60, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6389:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(61, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6399:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(62, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetTimeout': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6492:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(63, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetTimeout': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6533:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(64, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_Read': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6575:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(65, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6585:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(66, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_ReadLine': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6616:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(125, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_PushBack': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6693:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(67, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_Write': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6745:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(68, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6772:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(69, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6782:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(70, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_Abort': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6801:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(71, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6808:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(72, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetOSHandleEx': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:6959:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(73, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetCork': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7022:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(158, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7029:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(159, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7042:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_DisableOSSendDelay': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7059:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(156, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7066:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(157, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7079:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'DSOCK_CreateEx': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7120:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(76, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7159:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(77, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7209:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(130, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Bind': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7239:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(79, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7246:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(78, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7264:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7280:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(114, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Connect': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7309:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(82, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7316:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(81, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7335:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(83, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7348:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(84, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7377:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(85, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WaitMsg': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7405:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(96, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7412:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(95, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'DSOCK_RecvMsg': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7451:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(93, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7458:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(92, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SendMsg': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7495:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(87, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7502:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(86, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WipeMsg': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7534:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(98, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7541:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(97, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7561:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(99, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SetBroadcast': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7579:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(101, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7586:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(100, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7606:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(102, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetReuseAddress': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:168:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket.c:7768:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, ^ /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:114:54: note: in expansion of macro 'CORE_CURRENT_FUNCTION' LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:1280:9: note: in expansion of macro 'LOG_WRITE' LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:1499:9: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:144:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:1512:9: note: in expansion of macro 'CORE_LOGF' CORE_LOGF(eLOG_Critical, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:1527:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(3, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:1555:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(4, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:1622:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:1635:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:1673:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(7, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connutil.c:1712:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:34: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'x_ReInit': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:239:13: note: in expansion of macro 'CONN_LOG' CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:268:21: note: in expansion of macro 'CONN_LOG' CONN_LOG(3, Close, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:272:21: note: in expansion of macro 'CONN_LOG' CONN_LOG(3, ReInit, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 's_Open': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:342:9: note: in expansion of macro 'CONN_LOG' CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_CreateEx': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:383:9: note: in expansion of macro 'CONN_LOG' CONN_LOG(2, Create, eLOG_Error, "NULL connector"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_ReInit': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:404:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(1, ReInit); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:404:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(1, ReInit); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_GetType': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:412:5: note: in expansion of macro 'CONN_NOT_NULL_EX' CONN_NOT_NULL_EX(6, GetType, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:412:5: note: in expansion of macro 'CONN_NOT_NULL_EX' CONN_NOT_NULL_EX(6, GetType, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_Description': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:421:5: note: in expansion of macro 'CONN_NOT_NULL_EX' CONN_NOT_NULL_EX(7, Description, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:421:5: note: in expansion of macro 'CONN_NOT_NULL_EX' CONN_NOT_NULL_EX(7, Description, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_GetPosition': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:433:5: note: in expansion of macro 'CONN_NOT_NULL_EX' CONN_NOT_NULL_EX(30, GetPosition, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:433:5: note: in expansion of macro 'CONN_NOT_NULL_EX' CONN_NOT_NULL_EX(30, GetPosition, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:446:9: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_SetTimeout': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:462:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(8, SetTimeout); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:462:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(8, SetTimeout); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:502:9: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_GetTimeout': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:517:5: note: in expansion of macro 'CONN_NOT_NULL_EX' CONN_NOT_NULL_EX(10, GetTimeout, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:517:5: note: in expansion of macro 'CONN_NOT_NULL_EX' CONN_NOT_NULL_EX(10, GetTimeout, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:525:9: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(11, GetTimeout, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:540:9: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_Wait': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:556:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(13, Wait); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:556:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(13, Wait); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:600:9: note: in expansion of macro 'CONN_LOG' CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 's_CONN_Write': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:621:9: note: in expansion of macro 'CONN_LOG' CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:661:13: note: in expansion of macro 'CONN_LOG' CONN_LOG(17, Write, level, "Unable to write data"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_Write': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:703:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(18, Write); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:703:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(18, Write); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_PushBack': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:738:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(19, PushBack); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:738:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(19, PushBack); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_Flush': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:758:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(20, Flush); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:758:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(20, Flush); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:772:9: note: in expansion of macro 'CONN_LOG' CONN_LOG(21, Flush, eLOG_Warning, "Failed to flush"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 's_CONN_Read': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:797:9: note: in expansion of macro 'CONN_LOG' CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:836:17: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(32, Read, eLOG_Critical, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro 'CONN_LOG_EX' #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:862:13: note: in expansion of macro 'CONN_LOG' CONN_LOG(23, Read, level, "Unable to read data"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_Read': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:913:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(24, Read); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:913:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(24, Read); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_ReadLine': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:962:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(25, ReadLine); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:962:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(25, ReadLine); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1010:17: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(35, ReadLine, eLOG_Critical, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_Status': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1029:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(26, Status); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1029:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(26, Status); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_Close': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1068:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(27, Close); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1068:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(27, Close); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_SetCallback': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1087:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(28, SetCallback); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1087:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(28, SetCallback); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1093:9: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c: In function 'CONN_GetSOCK': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1114:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(36, GetSOCK); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro 'CONN_LOG_EX' CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro 'CONN_NOT_NULL_EX' #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connection.c:1114:5: note: in expansion of macro 'CONN_NOT_NULL' CONN_NOT_NULL(36, GetSOCK); ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/redo_alignment.c:190:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/redo_alignment.c:205:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libcomposition_adjustment.so /bin/ln -f .composition_adjustment.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/composition_adjustment' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connector.c -o ncbi_connector.o make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/tables' In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connector.c:34: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connector.c: In function 'METACONN_Remove': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connector.c:42:3: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connector.c:64:13: note: in expansion of macro 'METACONN_LOG' METACONN_LOG(34, eLOG_Error, ^ /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connector.c: In function 'METACONN_Add': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connector.c:42:3: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro 'METACONN_LOG' METACONN_LOG(33, eLOG_Error, ^ make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/.#lock-map. Waiting for /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect/make__connect_common.lockmake[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libtables.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libtables.so /bin/ln -f .tables.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/tables' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/tables' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/creaders' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/creaders/alnread.c -o alnread.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket_connector.c:38: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket_connector.c: In function 's_VT_Open': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket_connector.c:171:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(163, eLOG_Error, ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:38: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c: In function 's_Adjust': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:303:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(2, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:317:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(17, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:338:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(3, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:352:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(18, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:362:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(4, eLOG_Critical, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:386:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(1, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c: In function 's_Connect': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:498:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(5, eLOG_Critical, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:228:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:152:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:612:25: note: in expansion of macro 'CORE_LOGF_ERRNO_X' CORE_LOGF_ERRNO_X(20, eLOG_Error, error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c: In function 's_ConnectAndSend': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:814:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(6, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c: In function 's_ReadHeader': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:910:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(7, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:944:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(8, level, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_DATA' DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1006:9: note: in expansion of macro 'CORE_DATAF_X' CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, str, size, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1042:25: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(10, eLOG_Critical, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1085:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(22, uuu->flags & fHTTP_SuppressMessages ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1100:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(11, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_DATA' DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1154:13: note: in expansion of macro 'CORE_DATAF_X' CORE_DATAF_X(9, eLOG_Note, str, size, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1264:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(19, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1269:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1280:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(13, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:232:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:184:5: note: in expansion of macro 'DO_CORE_LOG_DATA' DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1288:17: note: in expansion of macro 'CORE_DATAF_X' CORE_DATAF_X(14, eLOG_Note, str, n, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1297:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(15, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c: In function 's_Read': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1437:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(16, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_connector.c:1485:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(21, eLOG_Warning, ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:115: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Create': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:243:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(1, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:264:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(2, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_AttachFast': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:288:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(3, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:297:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(4, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:326:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(34, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 's_HEAP_Find': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:422:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(8, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Alloc': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:630:9: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:636:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(7, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:680:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(9, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Free': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:796:9: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C d/bin/rm -f libcreaders.so .libcreaders.so.stamp oes not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:802:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(11, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:821:21: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(12, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:833:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(13, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:840:5: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(14, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_FreeFast': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:852:9: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:858:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(16, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:872:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(17, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:883:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(18, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:890:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(19, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Trim': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:912:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(30, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:947:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(31, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:974:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(32, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 's_HEAP_Walk': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:996:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(28, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:1010:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(26, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:1013:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(27, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:1025:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(23, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:1112:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(21, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:1127:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(20, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:1145:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(22, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:1156:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(24, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Walk': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:1172:9: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Destroy': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_heapmgr.c:1273:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(33, eLOG_Error, ^ /usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libcreaders.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libcreaders.so /bin/ln -f .creaders.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.creaders.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/creaders' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/creaders' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service.c -o ncbi_service.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service.c:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service.c: In function 's_ServiceName': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service.c:81:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(7, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service.c:90:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(8, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service.c: In function 's_Open': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service.c:278:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(1, eLOG_Error, ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_dispd.c:38: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_dispd.c: In function 's_Resolve': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_dispd.c:198:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(1, eLOG_Error, ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c: In function 's_OpenDispatcher': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c:93:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(5, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c: In function 's_ParseHeader': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c:168:36: warning: format '%n' expects argument of type 'int *', but argument 7 has type 'unsigned int *' [-Wformat=] if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c:169:44: warning: format '%n' expects argument of type 'int *', but argument 5 has type 'unsigned int *' [-Wformat=] || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c: In function 's_Open': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c:765:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(4, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c:787:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(9, net_info->firewall == eFWMode_Fallback ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c: In function 's_VT_Open': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_service_connector.c:965:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(6, eLOG_Error, ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:34: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c: In function 's_SendRcpt': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:390:13: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(3, "Recipient address is too long"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:393:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(1, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:401:13: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(4, write_error); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:353:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:404:13: note: in expansion of macro 'SENDMAIL_RETURN2' SENDMAIL_RETURN2(5, proto_error, buf); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c: In function 'CORE_SendMailEx': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:456:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(6, "Invalid magic cookie"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:461:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(7, "At least one message recipient must be specified"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:353:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:471:9: note: in expansion of macro 'SENDMAIL_RETURN2' SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:353:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:478:9: note: in expansion of macro 'SENDMAIL_RETURN2' SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:483:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(10, "Unable to get local host name"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:488:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(11, "Write error in HELO command"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:353:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:491:9: note: in expansion of macro 'SENDMAIL_RETURN2' SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:496:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(13, "Write error in MAIL command"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:353:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:499:9: note: in expansion of macro 'SENDMAIL_RETURN2' SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:520:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(15, "Write error in DATA command"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:353:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:522:9: note: in expansion of macro 'SENDMAIL_RETURN2' SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:553:21: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(32, "Write error in sending Date"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:560:21: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(33, "Write error in sending From"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:568:17: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(17, "Write error in sending Subject"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:575:17: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(18, "Write error in sending To"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:582:17: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(19, "Write error in sending Cc"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:132:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:586:9: note: in expansion of macro 'CORE_LOG_X' CORE_LOG_X(2, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:597:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(20, "Write error in sending mailer information"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:624:17: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(21, "Write error while sending custom header"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:627:13: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(22, "Header write error"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:629:13: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(23, "Write error while finalizing custom header"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:637:17: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(24, "Write error in message body delimiter"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:663:17: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(25, "Write error while sending message body"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:666:13: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(26, "Body write error"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:669:13: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(27, "Write error while finalizing message body"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:672:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(28, "Write error while finalizing message"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:353:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:677:9: note: in expansion of macro 'SENDMAIL_RETURN2' SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:341:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:680:9: note: in expansion of macro 'SENDMAIL_RETURN' SENDMAIL_RETURN(30, "Write error in QUIT command"); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:353:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(subcode, eLOG_Error, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_sendmail.c:682:9: note: in expansion of macro 'SENDMAIL_RETURN2' SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); ^ ./usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:56:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:50: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPCloseData': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:199:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(7, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:204:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(9, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:218:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(11, eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:222:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(8, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:236:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPReply': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:283:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(10, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPCommandEx': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:359:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(4, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPLogin': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:592:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(3, eLOG_Trace, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPPassive': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:950:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(2, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:1110:21: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(5, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPPollCntl': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:1633:13: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(12, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Open': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:1899:9: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(13, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Write': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:136:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:1974:17: note: in expansion of macro 'CORE_LOGF_X' CORE_LOGF_X(6, eLOG_Error, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c: In function 's_CreateConnector': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:209:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' _mess.func = CORE_CURRENT_FUNCTION; \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:224:5: note: in expansion of macro 'DO_CORE_LOG_X' DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_priv.h:140:5: note: in expansion of macro 'DO_CORE_LOG' DO_CORE_LOG(0, 0, level, \ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_ftp_connector.c:2289:9: note: in expansion of macro 'CORE_LOG' CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_version.c -o ncbi_version.o /bin/rm -f libconnect.so .libconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lnsl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libconnect.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libconnect.so /bin/ln -f .connect.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.connect.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/html' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/html TMPL=html -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/html/html.cpp -o html.o . Acquired /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect/make__connect_common.lock for PID 20782 (make__connect_common) make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgene_info.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libgene_info.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libgene_info.so /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/ln -f .gene_info.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libsequtil.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libsequtil.so /bin/ln -f .sequtil.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/sequtil' cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial TMPL=serial -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test strip gene_info_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f gene_info_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxhtml.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxhtml.so /bin/ln -f .xhtml.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/html' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/html' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/cgi' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/cgi/.#lock-map. make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/memberid.cpp -o memberid.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxncbi -lnsl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxconnect.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxconnect.so /bin/ln -f .xconnect.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/aa_ungapped.c:489:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/aa_ungapped.c:496:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_OneHit': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/aa_ungapped.c:756:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/aa_ungapped.c:763:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_engine.c:1261:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_engine.c:1387:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_engine.c:1465:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_aascan.c: In function 'BlastChooseProteinScanSubject': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_aascan.c:572:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_aascan.c:575:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_aascan.c:580:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c: In function 's_NaChooseScanSubject': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:296:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:298:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c: In function 's_SmallNaChooseScanSubject': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1325:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1332:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1339:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1341:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1348:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1350:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1352:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1359:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1365:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1369:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_1Mod4; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1373:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_2Mod4; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:1377:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c: In function 's_MBChooseScanSubject': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2583:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2585:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2587:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2589:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2597:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2599:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2601:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2606:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2608:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2610:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2612:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2618:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2621:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2624:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2627:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2638:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c: In function 'BlastChooseNucleotideScanSubjectAny': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2657:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2660:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_nascan.c:2662:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/member.cpp -o member.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c: In function 's_IsSeedMasked': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:489:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c: In function 'BlastNaWordFinder': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1605:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1606:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1618:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1619:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1626:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1627:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1640:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c: In function 'MB_IndexedWordFinder': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1706:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1708:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c: In function 'BlastChooseNaExtend': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1778:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_MBLookup; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1782:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1785:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1787:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1791:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1795:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1801:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtend; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1805:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_NaLookup; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1809:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1812:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/na_ungapped.c:1814:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c: In function 'void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2226:19: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD' mz_uint16 c01 = TDEFL_READ_UNALIGNED_WORD(&d->m_dict[pos + match_len - 1]), s01 = TDEFL_READ_UNALIGNED_WORD(s); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2237:13: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD' if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2238:7: note: in expansion of macro 'TDEFL_PROBE' TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2237:13: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD' if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2238:20: note: in expansion of macro 'TDEFL_PROBE' TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2237:13: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD' if (TDEFL_READ_UNALIGNED_WORD(&d->m_dict[probe_pos + match_len - 1]) == c01) break; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2238:33: note: in expansion of macro 'TDEFL_PROBE' TDEFL_PROBE; TDEFL_PROBE; TDEFL_PROBE; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2220:59: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define TDEFL_READ_UNALIGNED_WORD(p) *(const mz_uint16*)(p) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2250:13: note: in expansion of macro 'TDEFL_READ_UNALIGNED_WORD' c01 = TDEFL_READ_UNALIGNED_WORD(&d->m_dict[pos + match_len - 1]); ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c: At global scope: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:3325:27: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE int mz_zip_reader_filename_compare(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, const char *pR, mz_uint r_len) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:3314:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_reader_string_equal(const char *pA, const char *pB, mz_uint len, mz_uint flags) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:3225:39: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE const mz_uint8 *mz_zip_reader_get_cdh(mz_zip_archive *pZip, mz_uint file_index) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2991:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_reader_filename_less(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, mz_uint r_index) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2918:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_push_back(mz_zip_archive *pZip, mz_zip_array *pArray, const void *pElements, size_t n) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2913:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_ensure_room(mz_zip_archive *pZip, mz_zip_array *pArray, size_t n) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2906:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_resize(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_size, mz_uint growing) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2900:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_reserve(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_capacity, mz_uint growing) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2885:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void mz_zip_array_clear(mz_zip_archive *pZip, mz_zip_array *pArray) ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2431:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_record_match(tdefl_compressor *d, mz_uint match_len, mz_uint match_dist) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2423:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_record_literal(tdefl_compressor *d, mz_uint8 lit) ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/api/miniz/miniz.c:2221:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_find_match(tdefl_compressor *d, mz_uint lookahead_pos, mz_uint max_dist, mz_uint max_match_len, mz_uint *pMatch_dist, mz_uint *pMatch_len) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT 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-Wl,--as-needed -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib 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/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxcgi.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxcgi.so /bin/ln -f .xcgi.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objostrxml.cpp -o objostrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objistrxml.cpp -o objistrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objostrjson.cpp -o objostrjson.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objistrxml.cpp: In member function 'virtual std::__cxx11::string ncbi::CObjectIStreamXml::ReadFileHeader()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objistrxml.cpp:583:33: warning: variable 'docType' set but not used [-Wunused-but-set-variable] CTempString docType = ReadName(SkipWS()); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/objistrjson.cpp -o objistrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/pathhook.cpp -o pathhook.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxser.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxser.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxser.so /bin/ln -f .xser.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool TMPL=datatool -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE 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-I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -o datatool strip datatool /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f datatool /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biblio' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medline' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh biblio all make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/general' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh medline all make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pub' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh general all cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh pub all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.12.0 datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general' datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub' datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pub' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medline' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/general' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqcode' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastdb' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqcode && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh seqcode all cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastdb && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh blastdb all /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biblio' cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genomecoll' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh genome_collection all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -w -j --jobserver-fds=3,4 all make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' status=0 ; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../$x ; \ (cd $d && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqcode' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastdb' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastdb' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqcode' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastdb' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastdb' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqcode' cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqalign' make[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastdb' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqset' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh seqset all /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/scoremat' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/scoremat && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh scoremat all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh gencoll_client all datatool: 2.12.0 make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqalign' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/scoremat' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqblock' make[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/scoremat' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset' datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/scoremat' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqset' cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/scoremat' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll' datatool: 2.12.0 make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqblock' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqedit' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqedit && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh seqedit all /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/scoremat' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/submit' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/submit && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh submit all /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub/pub.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqfeat' make[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genomecoll' cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqedit' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/variation' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/variation && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh variation all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/submit' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/submit' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/submit' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/submit' datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/submit' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqedit' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqedit' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh blast all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub/pub.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all datatool: 2.12.0 make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqfeat' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/variation' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqedit' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id1' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id1 && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh id1 all datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/variation' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/variation' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/variation' make[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump /usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/variation' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqsplit' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id1' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqsplit && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh seqsplit all datatool: 2.12.0 make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc' datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id1' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id1' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id1' datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast' /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast' /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqres' make[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqsplit' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. datatool: 2.12.0 make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqres' /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id1' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id2' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id2 && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh id2 all datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqsplit' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqsplit' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqsplit' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh blastxml all make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqtable' make[7]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqsplit' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml2' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml2 && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh blastxml2 all datatool: 2.12.0 make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id2' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh seq all File blastxml2.module not found. Using defaults... datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml2' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml' datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id2' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id2' /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id2' datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml2' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2 && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh entrez2 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml2' /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml2' /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub/pub.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbseq' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/gbseq && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh gbseq all make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id2' cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medlars' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medlars && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh medlars all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/gbseq' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/gbseq' datatool: 2.12.0 datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/gbseq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/gbseq' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medlars' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2' datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medlars' /usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbseq' cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pubmed' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pubmed && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh pubmed all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medlars' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh mla all make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medlars' /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medlars' cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon1' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1 && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh taxon1 all make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valid' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valid && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh valid all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pubmed' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.12.0 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pubmed' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla' /usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pubmed' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 sources datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valerr' cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valerr && /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/new_module.sh valerr all /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valid' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon1' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valid' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/general' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valid' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valid' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general TMPL=general -w -j --jobserver-fds=3,4 all /usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valid' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ DATATOOL=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src all make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valerr' /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++ -opm /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src -m valerr.asn -M "" -oA -oc valerr -or objects/valerr -odi -od valerr.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general__.cpp -o general__.o datatool: 2.12.0 make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valerr' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valerr' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valerr' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/make[4] (Makefile.valerr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valerr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqcode.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libseqcode.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libseqcode.so /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/ln -f .seqcode.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqcode' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml2' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libblastxml.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libblastxml.so /bin/ln -f .blastxml.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/general/uoconv.cpp -o uoconv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbseq' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbseq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/rm -f libblastxml2.so .libblastxml2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libgeneral.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libgeneral.so /bin/ln -f .general.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/general' cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biblio' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libblastxml2.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libblastxml2.so /bin/ln -f .blastxml2.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml2' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valid' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valid' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valid/valid__.cpp -o valid__.o /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libentrez2.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libentrez2.so /bin/ln -f .entrez2.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /bin/rm -f libgbseq.so .libgbseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgbseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC gbseq__.o gbseq___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libgbseq.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libgbseq.so /bin/ln -f .gbseq.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbseq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2cli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libentrez2cli.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libentrez2cli.so /bin/ln -f .entrez2cli.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' /bin/rm -f libvalid.so .libvalid.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalid.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC valid__.o valid___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libvalid.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libvalid.so /bin/ln -f .valid.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.valid.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valid' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valid' /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libbiblio.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libbiblio.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libbiblio.so /bin/ln -f .biblio.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biblio' cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medline' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medlars' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medlars' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medlars/medlars___.cpp -o medlars___.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medline' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedlars.so .libmedlars.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedlars.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC medlars__.o medlars___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libmedlars.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libmedlars.so /bin/ln -f .medlars.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.medlars.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medlars' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medlars' /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedline.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libmedline.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libmedline.so /bin/ln -f .medline.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pub' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pubmed' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pub' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pub/pub___.cpp -o pub___.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pubmed' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.so .libpubmed.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpubmed.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC pubmed__.o pubmed___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libpubmed.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libpubmed.so /bin/ln -f .pubmed.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.pubmed.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pubmed' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pubmed' /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpub.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libpub.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libpub.so /bin/ln -f .pub.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pub' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla/mla___.cpp -o mla___.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqblock__.cpp -o seqblock__.o /bin/rm -f libmla.so .libmla.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmla.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC mla__.o mla___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/Seq_align.cpp:1387:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/Seq_align.cpp:1391:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/Seq_align.cpp:1396:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/../seqalign/Seq_align.cpp:1370:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^ /bin/ln -f libmla.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libmla.so /bin/ln -f .mla.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.mla.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqloc__.cpp -o seqloc__.o /bin/rm -f libmlacli.so .libmlacli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmlacli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC mla_client.o mla_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libmlacli.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libmlacli.so /bin/ln -f .mlacli.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libseq.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libseq.so /bin/ln -f .seq.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastdb' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/variation' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqset' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset/seqset__.cpp -o seqset__.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/variation' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/variation/variation___.cpp -o variation___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libblastdb.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libblastdb.so /bin/ln -f .blastdb.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libvariation.so .libvariation.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvariation.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC variation__.o variation___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libvariation.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libvariation.so /bin/ln -f .variation.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/variation' cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqset.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libseqset.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libseqset.so /bin/ln -f .seqset.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1/utils.cpp -o utils.o /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgenome_collection.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libgenome_collection.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libgenome_collection.so /bin/ln -f .genome_collection.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genomecoll' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/submit/submit__.cpp -o submit__.o /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libtaxon1.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libtaxon1.so /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/ln -f .taxon1.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon1' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id1/id1__.cpp -o id1__.o /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libscoremat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libscoremat.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libscoremat.so /bin/ln -f .scoremat.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/scoremat' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id1/id1___.cpp -o id1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsubmit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libsubmit.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libsubmit.so /bin/ln -f .submit.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/submit' cd objects/valerr/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valerr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valerr' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valerr TMPL=valerr -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valerr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqedit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libseqedit.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libseqedit.so /bin/ln -f .seqedit.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqedit' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/format' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/accession_item.cpp -o accession_item.o /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libid1.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libid1.so /bin/ln -f .id1.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id1' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqsplit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/rm -f libvalerr.so .libvalerr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalerr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC valerr__.o valerr___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libvalerr.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libvalerr.so /bin/ln -f .valerr.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.valerr.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valerr' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valerr' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/read_util.cpp -o read_util.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libseqsplit.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libseqsplit.so /bin/ln -f .seqsplit.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqsplit' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast/names.cpp -o names.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/date_item.cpp -o date_item.o /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxnetblast.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxnetblast.so /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/table_field.cpp -o table_field.o /bin/ln -f .xnetblast.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/id2/id2___.cpp -o id2___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libid2.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libid2.so /bin/ln -f .id2.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id2' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/cleanup' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/defline_item.cpp -o defline_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/fasta.cpp -o fasta.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/feature_item.cpp:1795:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/annot_object.cpp -o annot_object.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/microarray_reader.cpp:86:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/readers/microarray_reader.hpp: In constructor 'ncbi::objects::CMicroArrayReader::CMicroArrayReader(int)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/readers/microarray_reader.hpp:114:10: warning: 'ncbi::objects::CMicroArrayReader::m_usescore' will be initialized after [-Wreorder] bool m_usescore; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/readers/microarray_reader.hpp:113:31: warning: 'std::vector >::size_type ncbi::objects::CMicroArrayReader::m_columncount' [-Wreorder] vector::size_type m_columncount; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/microarray_reader.cpp:99:1: warning: when initialized here [-Wreorder] CMicroArrayReader::CMicroArrayReader( ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/primary_item.cpp -o primary_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/tse_info.cpp -o tse_info.o /bin/rm -f libxcleanup.so .libxcleanup.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcleanup.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxregexp -lpcre /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxcleanup.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxcleanup.so /bin/ln -f .xcleanup.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xcleanup.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/segment_item.cpp -o segment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/source_item.cpp -o source_item.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/source_item.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/context.cpp -o context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gather_items.cpp -o gather_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/utils.cpp: In function 'bool ncbi::objects::s_IsTagStart(const const_iterator&, const const_iterator&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/utils.cpp:1346:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx ) { ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/utils.cpp: In function 'bool ncbi::objects::CommentHasSuspiciousHtml(const string&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/utils.cpp:1449:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( ; ii < sizeof(bad_html_strings)/sizeof(bad_html_strings[0]) ; ++ii ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/data_source.cpp -o data_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gather_items.cpp:748:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/priority.cpp -o priority.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp:34: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff3_formatter.hpp: In constructor 'ncbi::objects::CGFF3_Formatter::CGFF3_Formatter()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff3_formatter.hpp:67:5: warning: 'ncbi::objects::CGFFFormatter::CGFFFormatter()' is deprecated [-Wdeprecated-declarations] { ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff_formatter.hpp:89:26: note: declared here NCBI_DEPRECATED_CTOR(CGFFFormatter(void)); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp: In static member function 'static ncbi::objects::CFlatItemFormatter* ncbi::objects::CFlatItemFormatter::New(ncbi::objects::CFlatFileConfig::TFormat)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp:93:20: warning: 'CGFFFormatter' is deprecated [-Wdeprecated-declarations] return new CGFFFormatter; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff3_formatter.hpp:39:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp:58: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff_formatter.hpp:71:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFFFormatter : public CFlatItemFormatter ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp:93:20: warning: 'ncbi::objects::CGFFFormatter::CGFFFormatter()' is deprecated [-Wdeprecated-declarations] return new CGFFFormatter; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp:34: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff_formatter.hpp:89:26: note: declared here NCBI_DEPRECATED_CTOR(CGFFFormatter(void)); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp:96:20: warning: 'CGFF3_Formatter' is deprecated [-Wdeprecated-declarations] return new CGFF3_Formatter; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp:58:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff3_formatter.hpp:62:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFF3_Formatter : public CGFFFormatter ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp: In function 'void ncbi::objects::s_FormatCitGen(const ncbi::objects::CReferenceItem&, std::__cxx11::string&, const ncbi::objects::CFlatFileConfig&, ncbi::objects::CBioseqContext&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_formatter.cpp:875:70: warning: suggest parentheses around '&&' within '||' [-Wparentheses] date.IsStd() && date.GetStd().IsSetYear() && date.GetStd().GetYear() != 0) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function 'Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:257:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] Uint4 end_value = *((int *) & end_bytes); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libblast_unit_test_util.a /bin/ln -f .blast_unit_test_util.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.blast_unit_test_util.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o /bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libseqalign_util.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libseqalign_util.a /bin/ln -f .seqalign_util.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.seqalign_util.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/scope.cpp -o scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff_gather.cpp -o gff_gather.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/source_mod_parser.cpp: In member function 'void ncbi::objects::CSourceModParser::x_ApplyMods(ncbi::objects::CAutoInitDesc&, ncbi::CTempString)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/source_mod_parser.cpp:663:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( colon_location == string::npos ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff_formatter.cpp -o gff_formatter.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libblast_app_util.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff_formatter.cpp: In member function 'virtual void ncbi::objects::CGFFFormatter::FormatFeature(const ncbi::objects::CFeatureItemBase&, ncbi::objects::IFlatTextOStream&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff_formatter.cpp:217:62: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::__cxx11::string&, const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&, const ncbi::objects::CCdregion&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] (s, ctx.GetHandle(), *tentative_stop, cds); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff_formatter.cpp:38:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/util/sequence.hpp:874:17: note: declared here static void TranslateCdregion (string& prot, ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff_formatter.cpp: In member function 'void ncbi::objects::CGFFFormatter::x_AddFeature(std::__cxx11::list >&, const ncbi::objects::CSeq_loc&, const string&, const string&, const string&, int, const string&, bool, ncbi::objects::CBioseqContext&, bool) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff_formatter.cpp:557:69: warning: 'static int ncbi::NStr::StringToNumeric(const string&)' is deprecated [-Wdeprecated-declarations] int n = NStr::StringToNumeric((*q)->GetVal()); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff_formatter.cpp:34: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:248:16: note: declared here static int StringToNumeric(const string& str) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjread.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o message_listener.o line_error.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lsubmit -lseqset -lseq -lpub -lgeneral -lxser -lcreaders -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/scope_info.cpp -o scope_info.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxobjread.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxobjread.so /bin/ln -f .xobjread.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/readers' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff3_formatter.cpp -o gff3_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff3_formatter.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff3_formatter.hpp: In constructor 'ncbi::objects::CGFF3_Formatter::CGFF3_Formatter()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff3_formatter.hpp:67:5: warning: 'ncbi::objects::CGFFFormatter::CGFFFormatter()' is deprecated [-Wdeprecated-declarations] { ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff_formatter.hpp:89:26: note: declared here NCBI_DEPRECATED_CTOR(CGFFFormatter(void)); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbimisc.hpp:1289:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxnetblastcli.so /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gap_item.cpp -o gap_item.o /bin/ln -f .xnetblastcli.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff3_formatter.cpp: At global scope: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff3_formatter.cpp:116:56: warning: 'CGFF3_Formatter' is deprecated [-Wdeprecated-declarations] IFlatTextOStream& text_os); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff3_formatter.cpp:37:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff3_formatter.hpp:62:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFF3_Formatter : public CGFFFormatter ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff3_formatter.cpp:131:33: warning: 'CGFF3_Formatter' is deprecated [-Wdeprecated-declarations] CGFF3_Formatter& m_GFF3_Fmt; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff3_formatter.cpp:37:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff3_formatter.hpp:62:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFF3_Formatter : public CGFFFormatter ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff3_formatter.cpp:139:76: warning: 'CGFF3_Formatter' is deprecated [-Wdeprecated-declarations] IFlatTextOStream& text_os) ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gff3_formatter.cpp:37:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/format/gff3_formatter.hpp:62:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_FORMAT_EXPORT CGFF3_Formatter : public CGFFFormatter ^ cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=NETBLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast_services.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libblast_services.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libblast_services.so /bin/ln -f .blast_services.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_map.cpp -o seq_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /bin/rm -f libxformat.so .libxformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o utils.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o gff_gather.o gff_formatter.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gff3_formatter.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxformat.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxformat.so /bin/ln -f .xformat.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xformat.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc 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-I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxobjmgr.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxobjmgr.so /bin/ln -f .xobjmgr.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/dustmask' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/util' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/weight.cpp -o weight.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp -o symdust.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_stack.hpp:111:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Impl; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1840:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Properties; // Per-thread properties ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1841:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagBuffer; // Thread's diag buffer ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1847:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RequestCtx; // Request context ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1848:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2314:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Host; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2316:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Username; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2317:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppName; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2319:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2320:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultHitId; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2326:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StopWatch; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2327:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2335:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppLogRC; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2336:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2337:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2577:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:950:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StackTrace; ///< Saved stack trace ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:3743:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Encoded; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbimtx.hpp:1016:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RW; ///< Platform-dependent RW-lock data ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiargs.hpp: In member function 'ncbi::CArgs* ncbi::CArgDescriptions::CreateArgs(TSize, TArray) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiargs.hpp:1161:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr args(new CArgs()); ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp: At global scope: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:583:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Environ; ///< Cached application env. ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:585:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagStream; ///< Opt., aux., see eDS_ToMemory ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:586:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Arguments; ///< Command-line arguments ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:587:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ArgDesc; ///< Cmd.-line arg descriptions ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:588:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:229:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Converter; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:401:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv1 ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:404:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv2 ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/continfo.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiutil.hpp: At global scope: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiutil.hpp:195:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AutoMap(auto_ptr& cache, const Source& source, const ToKey& toKey) ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/memberlist.hpp:138:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByName; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/memberlist.hpp:142:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByTag; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/memberlist.hpp:145:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByOffset; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:134:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ContainedTypes; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:141:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_SubClasses; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/enumerated.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/enumvalues.hpp:150:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_NameToValue; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/enumerated.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/enumvalues.hpp:151:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ValueToName; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:459:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_MappingCollector; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:467:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AnnotLocsSet; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:472:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_AnnotNames; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:155:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:164:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > operator()( const sequence_type & seq, ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:214:6: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< CSymDustMasker::TMaskList > ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp: In member function 'std::auto_ptr > > ncbi::CSymDustMasker::operator()(const sequence_type&, ncbi::CSymDustMasker::size_type, ncbi::CSymDustMasker::size_type)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:218:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res( new TMaskList ); ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp: At global scope: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:288:6: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< CSymDustMasker::TMaskList > ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp: In member function 'void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector >&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:299:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res = (*this)( seq ); ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:298:59: warning: typedef 'locs_type' locally defined but not used [-Wunused-local-typedefs] typedef std::vector< CConstRef< objects::CSeq_loc > > locs_type; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp: In member function 'ncbi::CRef ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:313:10: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res = (*this)( seq ); ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/dustmask/symdust.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxalgodustmask.so /bin/ln -f .xalgodustmask.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/dustmask' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/aln_builders.cpp: In function 'void ncbi::BuildAln(ncbi::TAnchoredAlnVec&, ncbi::CAnchoredAln&, const ncbi::CAlnUserOptions&, ncbi::TAlnSeqIdIRef)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/aln_builders.cpp:551:46: warning: typedef 'TPairwiseAlnVector' locally defined but not used [-Wunused-local-typedefs] typedef CAnchoredAln::TPairwiseAlnVector TPairwiseAlnVector; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/feature.cpp: In function 'bool ncbi::objects::feature::sFeatureGetChildrenOfSubtype(ncbi::objects::CMappedFeat, ncbi::objects::CSeqFeatData::ESubtype, std::vector&, ncbi::objects::feature::CFeatTree*)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/feature.cpp:3164:22: warning: unused variable 'ff' [-Wunused-variable] const CSeq_feat& ff = mf.GetOriginalFeature(); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmap.cpp:1469:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/create_defline.cpp: In member function 'std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/create_defline.cpp:2275:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'ncbi::CRef ncbi::CSeqDBVol::x_GetTaxDefline(int, int, ncbi::CSeqDBLockHold&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1005:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::iterator TBDLLIter; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1006:43: warning: typedef 'TBDLLConstIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::const_iterator TBDLLConstIter; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'std::__cxx11::list > ncbi::CSeqDBVol::x_GetTaxonomy(int, int, ncbi::CRef, ncbi::CSeqDBLockHold&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1058:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::iterator TBDLLIter; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result(-1); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnsegments.cpp:308:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxobjutil.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxobjutil.so /bin/ln -f .xobjutil.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/util' cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/segmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/segmask/segmask.cpp -o segmask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxalgosegmask.so /bin/ln -f .xalgosegmask.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/segmask' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split TMPL=id2_split -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -ldl -lm -lpthread /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xreader.a /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libseqdb.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libseqdb.so /bin/ln -f .seqdb.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xreader.so /bin/ln -f .ncbi_xreader-static.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xreader-static.dep /bin/ln -f .ncbi_xreader.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=3,4 all /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/util/sequence.hpp:274:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/score_builder_base.cpp: In function 'bool ncbi::s_IsProteinToGenomic(ncbi::objects::CScope&, const ncbi::objects::CSeq_align&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/alnmgr/score_builder_base.cpp:519:20: warning: unused variable 'id1' [-Wunused-variable] const CSeq_id& id1 = align.GetSeq_id(1); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/id_range.cpp -o id_range.o /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libseqmasks_io.so /bin/ln -f .seqmasks_io.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxalnmgr.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxalnmgr.so /bin/ln -f .xalnmgr.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/alnmgr' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxalgoblastdbindex.so /bin/ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xreader_id1.a /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xreader_id1.so /bin/ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xreader_id2.a /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xreader_id2.so /bin/ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xreader_cache.a /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xreader_cache.so /bin/ln -f .ncbi_xreader_cache-static.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f .ncbi_xreader_cache.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xreader_cache.dep /bin/ln -f libid2_split.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libid2_split.so make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null /bin/ln -f .id2_split.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function 'void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:78:18: warning: variable 'wholeL' set but not used [-Wunused-but-set-variable] int wholeL(0); ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o makembindex /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -ldl -lm -lpthread strip makembindex /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f makembindex /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/makembindex make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex/makeindex' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xloader_blastdb.so /bin/ln -f .ncbi_xloader_blastdb.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libblastdb_format.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libblastdb_format.so /bin/ln -f .blastdb_format.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f gene_info_reader /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o seqdb_demo /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o strip seqdb_demo /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f seqdb_demo /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f seqdb_perf /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/winmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_stack.hpp:111:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Impl; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1840:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Properties; // Per-thread properties ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1841:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagBuffer; // Thread's diag buffer ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1847:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RequestCtx; // Request context ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1848:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2314:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Host; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2316:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Username; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2317:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppName; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2319:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2320:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultHitId; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2326:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StopWatch; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2327:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2335:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppLogRC; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2336:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2337:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2577:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:950:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StackTrace; ///< Saved stack trace ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:3743:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Encoded; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbimtx.hpp:1016:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RW; ///< Platform-dependent RW-lock data ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiargs.hpp: In member function 'ncbi::CArgs* ncbi::CArgDescriptions::CreateArgs(TSize, TArray) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiargs.hpp:1161:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr args(new CArgs()); ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp: At global scope: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:583:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Environ; ///< Cached application env. ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:585:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagStream; ///< Opt., aux., see eDS_ToMemory ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:586:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Arguments; ///< Command-line arguments ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:587:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ArgDesc; ///< Cmd.-line arg descriptions ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:588:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:229:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Converter; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:401:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv1 ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:404:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv2 ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/continfo.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiutil.hpp: At global scope: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiutil.hpp:195:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AutoMap(auto_ptr& cache, const Source& source, const ToKey& toKey) ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/memberlist.hpp:138:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByName; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/memberlist.hpp:142:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByTag; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/memberlist.hpp:145:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByOffset; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:134:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ContainedTypes; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:141:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_SubClasses; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/enumerated.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/enumvalues.hpp:150:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_NameToValue; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/enumerated.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/enumvalues.hpp:151:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ValueToName; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:459:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_MappingCollector; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:467:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AnnotLocsSet; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:40: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:472:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_AnnotNames; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp: In member function 'ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:152:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr mask(new TMaskList); ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:169:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr window_ptr ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker.cpp:35: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o blast_services_unit_test strip blast_services_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blast_services_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -o seqdb_unit_test strip seqdb_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f seqdb_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xloader_genbank.a /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xloader_genbank.so /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so /bin/ln -f .ncbi_xloader_genbank-static.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /bin/ln -f .ncbi_xloader_genbank.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seq_writer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -o blastdb_format_unit_test /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o strip blastdb_format_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/showalign.cpp -o showalign.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:111:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/showalign.cpp:4409:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/showalign.cpp:4409:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libwritedb.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libwritedb.so /bin/ln -f .writedb.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxobjsimple.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxobjsimple.so /bin/ln -f .xobjsimple.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/simple' cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/dustmasker TMPL=dustmasker -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -ldl -lm -lpthread /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lncbi_xloader_genbank -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lncbi_xreader -lseqdb -lxalgodustmask -lxobjutil -lid2 -lxobjmgr -lxobjread -lid1 -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lcreaders -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o dustmasker /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libalign_format.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libalign_format.so /bin/ln -f .align_format.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o strip dustmasker /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f dustmasker /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/win_mask_util.cpp:37:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/util/sequence.hpp:274:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxalgowinmask.so /bin/ln -f .xalgowinmask.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/winmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o writedb_unit_test strip writedb_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f writedb_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker TMPL=winmasker -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalnmgr -lncbi_xreader -lseqdb -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcgi -lxcompress -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxutil -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o align_format_unit_test strip align_format_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f align_format_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_stack.hpp:111:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Impl; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1840:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Properties; // Per-thread properties ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1841:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagBuffer; // Thread's diag buffer ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1847:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RequestCtx; // Request context ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:1848:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2314:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_Host; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2316:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Username; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2317:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppName; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2319:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2320:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_DefaultHitId; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2326:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StopWatch; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2327:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2335:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AppLogRC; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2336:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2337:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbidiag.hpp:2577:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Messages; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/tempstr.hpp:38:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiexpt.hpp:950:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_StackTrace; ///< Saved stack trace ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:45:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbistr.hpp:3743:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Encoded; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbimtx.hpp:1016:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_RW; ///< Platform-dependent RW-lock data ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiargs.hpp: In member function 'ncbi::CArgs* ncbi::CArgDescriptions::CreateArgs(TSize, TArray) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiargs.hpp:1161:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr args(new CArgs()); ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp: At global scope: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:583:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Environ; ///< Cached application env. ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:585:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_DiagStream; ///< Opt., aux., see eDS_ToMemory ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:586:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Arguments; ///< Command-line arguments ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:587:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_ArgDesc; ///< Cmd.-line arg descriptions ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiapp.hpp:588:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:229:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_Converter; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:401:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv1 ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_map.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/tse_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/bioseq_handle.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/util/static_set.hpp:404:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr conv2 ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/continfo.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:38, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiutil.hpp: At global scope: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/ncbiutil.hpp:195:9: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] AutoMap(auto_ptr& cache, const Source& source, const ToKey& toKey) ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/memberlist.hpp:138:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByName; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/memberlist.hpp:142:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByTag; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/memberlist.hpp:145:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ItemsByOffset; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfob.hpp:134:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ContainedTypes; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:41:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/classinfo.hpp:141:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_SubClasses; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/enumerated.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/enumvalues.hpp:150:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_NameToValue; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/enumerated.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objectinfo.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objects/seqres/Seq_graph.hpp:46, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_object.hpp:41, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/serial/enumvalues.hpp:151:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_ValueToName; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:459:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_MappingCollector; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:467:5: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] auto_ptr m_AnnotLocsSet; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_feat_handle.hpp:43:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/scope.hpp:51, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/seq_vector.hpp:37, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:50, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/objmgr/impl/annot_collector.hpp:472:13: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] mutable auto_ptr m_AnnotNames; ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:155:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:164:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > operator()( const sequence_type & seq, ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp: In member function 'ncbi::CSDustMasker::TMaskList* ncbi::CSDustMasker::operator()(const ncbi::objects::CSeqVector&, const TMaskList&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:104:14: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr< TMaskList > result = duster_( ^ In file included from /usr/include/c++/5/memory:81:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template class auto_ptr; ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lncbi_xloader_genbank -lxalgowinmask -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lncbi_xreader -lseqdb -lxalgodustmask -lxobjutil -lid2 -lxobjmgr -lxobjread -lid1 -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o windowmasker strip windowmasker /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f windowmasker /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/windowmasker make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_impl.cpp: In member function 'void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] m_Query.Reset(new CObjMgrFree_QueryFactory(query_bioseq)); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_impl.cpp:45:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/version.cpp -o version.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function 'void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_aux_priv.cpp:474:41: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] CRef seq_fetcher(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/psiblast_aux_priv.cpp:47:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/query_data.cpp -o query_data.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/local_search.cpp: In member function 'virtual ncbi::CRef ncbi::blast::CLocalPssmSearch::Run()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/local_search.cpp:171:43: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/local_search.cpp:55:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/seedtop.cpp: In member function 'void ncbi::blast::CSeedTop::x_ParsePattern()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/seedtop.cpp:73:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i<(*unit).length(); ++i) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxblast.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/api' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/format' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o aalookup_unit_test /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread strip aalookup_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f aalookup_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/aalookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /bin/ln -f libigblast.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libigblast.so /bin/ln -f .igblast.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.igblast.dep /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j --jobserver-fds=3,4 all make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/igblast' make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie aascan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o aascan_unit_test strip aascan_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f aascan_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/aascan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blast_format.cpp:52:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blast_format.cpp:54:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blast_format.cpp:41: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/blast_format.cpp:476:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/data4xmlformat.cpp:41:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/data4xmlformat.cpp:41: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdiag_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastdiag_unit_test strip blastdiag_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastdiag_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/format/data4xml2format.hpp:42, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/data4xml2format.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblastformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lalign_format -lxalnmgr -lxobjmgr -lxnetblast -lscoremat -lblastxml -lseq -lgeneral -lxser -ltables -lxncbi -lblastxml2 -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libxblastformat.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libxblastformat.so /bin/ln -f .xblastformat.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/format' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastengine_unit_test strip blastengine_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastengine_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastengine_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastextend_unit_test /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o strip blastextend_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastextend_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o blasthits_unit_test strip blasthits_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blasthits_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastfilter_unit_test In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/test_boost.hpp:109:5: note: in definition of macro 'BOOST_CHECK_NO_THROW_IMPL' S; \ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1259:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1263:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1268:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1270:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1274:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1276:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1280:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1282:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1286:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1288:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:169:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ In file included from /usr/include/boost/test/unit_test.hpp:19:0, from /usr/include/boost/test/auto_unit_test.hpp:18, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/corelib/test_boost.hpp:66, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1327:57: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/blast_options.hpp:167:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ strip blastfilter_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastfilter_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie gapinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxalgowinmask -lblast_services -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lxnetblast -lxobjmgr -lxobjread -lscoremat -lseqedit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lnsl -ldl -lm -lpthread -o gapinfo_unit_test strip gapinfo_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastoptions_unit_test strip blastoptions_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastoptions_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib /bin/ln -f libblastinput.so /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib/libblastinput.so /bin/ln -f .blastinput.dep /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o gencode_singleton_unit_test strip gencode_singleton_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o hspfilter_besthit_unit_test strip hspfilter_besthit_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o hspfilter_culling_unit_test strip hspfilter_culling_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o blastsetup_unit_test strip blastsetup_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastsetup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o msa2pssm_unit_test strip msa2pssm_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/msa2pssm_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o hspstream_unit_test strip hspstream_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f hspstream_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/hspstream_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o linkhsp_unit_test strip linkhsp_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o ntlookup_unit_test strip ntlookup_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o phiblast_unit_test strip phiblast_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f phiblast_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie optionshandle_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o optionshandle_unit_test strip optionshandle_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/optionshandle_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie ntscan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o ntscan_unit_test strip ntscan_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f ntscan_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o psiblast_iteration_unit_test strip psiblast_iteration_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o prelimsearch_unit_test strip prelimsearch_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o psibl2seq_unit_test strip psibl2seq_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/psibl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie psiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o psiblast_unit_test strip psiblast_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f psiblast_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/psiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o pssmenginefreqratios_unit_test strip pssmenginefreqratios_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq(ncbi::TGi)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:495:47: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set(const std::vector&)': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:509:47: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function 'void QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths::test_method()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:580:43: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs)); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:38:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie querydata_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o querydata_unit_test strip querydata_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f querydata_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/querydata_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o queryinfo_unit_test strip queryinfo_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o redoalignment_unit_test strip redoalignment_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie rps_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o rps_unit_test strip rps_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f rps_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o pssmcreate_unit_test strip pssmcreate_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/pssmcreate_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie scoreblk_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o scoreblk_unit_test strip scoreblk_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/scoreblk_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie remote_blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o remote_blast_unit_test strip remote_blast_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o seqinfosrc_unit_test strip seqinfosrc_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie search_strategy_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o search_strategy_unit_test /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o setupfactory_unit_test strip search_strategy_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o strip setupfactory_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/setupfactory_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o subj_ranges_unit_test strip subj_ranges_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/subj_ranges_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie split_query_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o split_query_unit_test /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o strip split_query_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f split_query_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/split_query_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie traceback_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o traceback_unit_test strip traceback_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f traceback_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o tracebacksearch_unit_test strip tracebacksearch_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/tracebacksearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -ltest_boost -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o version_reference_unit_test strip version_reference_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f version_reference_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o seqsrc_unit_test strip seqsrc_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs -I../ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie uniform_search_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o uniform_search_unit_test strip uniform_search_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/uniform_search_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=blast_formatter -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithDB::test_method()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:79:43: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:48:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithBl2seq::test_method()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:118:43: warning: 'CObjMgrFree_QueryFactory' is deprecated [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^ In file included from /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:48:0: /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51:42: note: declared here NCBI_DEPRECATED_CLASS NCBI_XBLAST_EXPORT CObjMgrFree_QueryFactory : ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o bdbloader_unit_test strip bdbloader_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=blastn -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/blastn_app.cpp -o blastn_app.o cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=blastp -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blast_formatter strip blast_formatter /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blast_formatter /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=blastx -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blast_format_unit_test strip blast_format_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blast_format_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=deltablast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastn /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastp strip blastn /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=psiblast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o strip blastp /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastp /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=rpsblast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastx strip blastx /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastx /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=rpstblastn -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o deltablast strip deltablast /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f deltablast /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=seedtop -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o rpsblast /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o psiblast strip rpsblast /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f rpsblast /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=tblastn -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o strip psiblast /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f psiblast /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast TMPL=tblastx -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o rpstblastn strip rpstblastn /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f rpstblastn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o tblastx /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o seedtop /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o tblastn strip tblastx /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f tblastx /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb TMPL=blastdbcheck -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o strip seedtop /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f seedtop /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb TMPL=blastdbcmd -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o strip tblastn /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f tblastn /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb TMPL=blastdbcp -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdb_aliastool strip blastdb_aliastool /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastdb_aliastool /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb TMPL=convert2blastmask -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdbcp strip blastdbcp /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastdbcp /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb TMPL=makeblastdb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdbcheck /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o convert2blastmask strip blastdbcheck /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastdbcheck /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb TMPL=makeprofiledb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o strip convert2blastmask /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f convert2blastmask /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/segmasker TMPL=segmasker -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/segmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastdbcmd strip blastdbcmd /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastdbcmd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxalgosegmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxser -lsequtil -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lz -ldl -lm -lpthread -o segmasker cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o strip segmasker /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f segmasker /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/segmasker' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o makeblastdb strip makeblastdb /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f makeblastdb /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lvalid -lblastxml -lblastxml2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o makeprofiledb strip makeprofiledb /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f makeprofiledb /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 --jobserver-fds=3,4 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blast_unit_test strip blast_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blast_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/inc -I/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/include -Wno-unused-local-typedefs /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::FullyMaskedSequence::test_method()': /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:875:10: warning: unused variable 'caught_exception' [-Wunused-variable] bool caught_exception = false; ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o delta_unit_test strip delta_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f delta_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/delta_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie bl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb -lncbi_xloader_blastdb_rmt -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lncbi_xloader_blastdb_rmt -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnect -lncbi_xreader -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o bl2seq_unit_test strip bl2seq_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/bl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -L/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lxformat -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lxcleanup -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lmlacli -lseqset -ltaxon1 -lvariation -lmla -lseq -lpub -lpubmed -lmedlars -lmedline -lbiblio -lentrez2cli -lvalid -lblastxml -lblastxml2 -lentrez2 -lgbseq -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxregexp -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lbz2 -lnsl -lpcre -lz -ldl -lm -lpthread -o blastinput_unit_test strip blastinput_unit_test /bin/bash /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin /bin/ln -f blastinput_unit_test /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput/unit_test' make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build' make[2]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build' make[1]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' dh_auto_test /usr/bin/make -j1 check make[2]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++' if test -s ""; then \ cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build' ====================================================================== make[4]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/zlib' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/compress' /bin/echo 'Warning: non-existent sub-project "diff"' Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/tables' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' /usr/bin/make -C services -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "ext"' Warning: non-existent sub-project "ext" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/cgi' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/html' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder/msbuild' /usr/bin/make -f /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial/datatool' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/serial' /bin/echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/general' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id1' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml' /usr/bin/make -C blastxml2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/blastxml2' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/ncbimime' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/taxon3' /usr/bin/make -C gbproj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbproj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/gbproj' /usr/bin/make -C trackmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/trackmgr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/trackmgr' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/access' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genomecoll' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/macro' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/macro' /usr/bin/make -C genesbyloc -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genesbyloc' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/genesbyloc' /usr/bin/make -C coords -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/coords' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects/coords' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/util' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/readers' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" /bin/echo 'Warning: non-existent sub-project "trace"' Warning: non-existent sub-project "trace" /bin/echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/cleanup' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/format' /usr/bin/make -C edit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" /bin/echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools/align_format' /bin/echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" /bin/echo 'Warning: non-existent sub-project "uudutil"' Warning: non-existent sub-project "uudutil" /bin/echo 'Warning: non-existent sub-project "variation"' Warning: non-existent sub-project "variation" /bin/echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput/unit_test' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test TEST -- algo/blast/unit_tests/api/aalookup_unit_test TEST -- algo/blast/unit_tests/api/seqsrc_unit_test TEST -- algo/blast/unit_tests/api/delta_unit_test TEST -- algo/blast/unit_tests/api/ntlookup_unit_test TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test TEST -- algo/blast/unit_tests/api/setupfactory_unit_test TEST -- algo/blast/unit_tests/api/search_strategy_unit_test TEST -- algo/blast/unit_tests/api/redoalignment_unit_test TEST -- algo/blast/unit_tests/api/queryinfo_unit_test TEST -- algo/blast/unit_tests/api/querydata_unit_test TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test TEST -- algo/blast/unit_tests/api/blastsetup_unit_test TEST -- algo/blast/unit_tests/api/blastextend_unit_test TEST -- algo/blast/unit_tests/api/blastdiag_unit_test TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test TEST -- algo/blast/unit_tests/api/optionshandle_unit_test TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test TEST -- algo/blast/unit_tests/api/traceback_unit_test TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test TEST -- algo/blast/unit_tests/api/psiblast_unit_test TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test TEST -- algo/blast/unit_tests/api/phiblast_unit_test TEST -- algo/blast/unit_tests/api/split_query_unit_test TEST -- algo/blast/unit_tests/api/scoreblk_unit_test TEST -- algo/blast/unit_tests/api/hspstream_unit_test TEST -- algo/blast/unit_tests/api/rps_unit_test TEST -- algo/blast/unit_tests/api/gapinfo_unit_test TEST -- algo/blast/unit_tests/api/blasthits_unit_test TEST -- algo/blast/unit_tests/api/linkhsp_unit_test TEST -- algo/blast/unit_tests/api/blastengine_unit_test TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test TEST -- algo/blast/unit_tests/api/version_reference_unit_test TEST -- algo/blast/unit_tests/api/ntscan_unit_test TEST -- algo/blast/unit_tests/api/aascan_unit_test TEST -- algo/blast/unit_tests/api/remote_blast_unit_test TEST -- algo/blast/unit_tests/api/uniform_search_unit_test TEST -- algo/blast/unit_tests/api/blastfilter_unit_test TEST -- algo/blast/unit_tests/api/blastoptions_unit_test TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test TEST -- algo/blast/unit_tests/api/bl2seq_unit_test make[8]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /bin/echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" /bin/echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" /bin/echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" /bin/echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" /bin/echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" /bin/echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" /bin/echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" /bin/echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" /bin/echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" /bin/echo 'Warning: non-existent sub-project "primer"' Warning: non-existent sub-project "primer" /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo' /bin/echo 'Warning: non-existent sub-project "misc"' Warning: non-existent sub-project "misc" /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" /bin/echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" /bin/echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" /bin/echo 'Warning: non-existent sub-project "asn_cleanup"' Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blast' /bin/echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" /bin/echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" /bin/echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" /bin/echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" /bin/echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" /bin/echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app/blastdb' /bin/echo 'Warning: non-existent sub-project "vecscreen"' Warning: non-existent sub-project "vecscreen" /bin/echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" /bin/echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" /bin/echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" /bin/echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" /bin/echo 'Warning: non-existent sub-project "lds_indexer"' Warning: non-existent sub-project "lds_indexer" /bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" /bin/echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" /bin/echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" /bin/echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" /bin/echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" /bin/echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" /bin/echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" /bin/echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" /bin/echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" /bin/echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" /bin/echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" /bin/echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" /bin/echo 'Warning: non-existent sub-project "lds2_indexer"' Warning: non-existent sub-project "lds2_indexer" /bin/echo 'Warning: non-existent sub-project "discrep_report"' Warning: non-existent sub-project "discrep_report" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "biosample_chk"' Warning: non-existent sub-project "biosample_chk" /bin/echo 'Warning: non-existent sub-project "gap_stats"' Warning: non-existent sub-project "gap_stats" /bin/echo 'Warning: non-existent sub-project "table2asn"' Warning: non-existent sub-project "table2asn" /bin/echo 'Warning: non-existent sub-project "srcchk"' Warning: non-existent sub-project "srcchk" /bin/echo 'Warning: non-existent sub-project "ncbi_encrypt"' Warning: non-existent sub-project "ncbi_encrypt" /bin/echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" /bin/echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" /bin/echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" /bin/echo 'Warning: non-existent sub-project "rmblastn"' Warning: non-existent sub-project "rmblastn" make[5]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" /bin/echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... Done. OK -- [serial/datatool] datatool.sh (real 0.34, user 0.22, sys 0.13) SKP -- [serial/datatool] datatool_xml.sh OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.01, sys 0.01) OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.01, user 0.00, sys 0.01) ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.18, user 0.07, sys 0.05) Succeeded : 3 Timeout : 0 Failed : 1 Absent : 1 /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/build-system/Makefile.meta_r:46: recipe for target 'check_r.real' failed make[3]: *** [check_r.real] Error 7 make[3]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build' Makefile:32: recipe for target 'check' failed make[2]: *** [check] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++' dh_auto_test: /usr/bin/make -j1 check returned exit code 2 debian/rules:56: recipe for target 'override_dh_auto_test' failed make[1]: [override_dh_auto_test] Error 2 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.18, user 0.07, sys 0.05) ====================================================================== aascan_unit_test ====================================================================== 13285/000/0000/PB 88FC33E5681C9081 0001/0001 2015-12-28T23:43:04.571523 lcy01-11 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test Running 4 test cases... 13285/000/0000/PE 88FC33E5681C9081 0002/0002 2015-12-28T23:43:04.575386 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test extra ncbi_phid=88FC33E5681C90810000000000008C77 13285/000/0000/PE 88FC33E5681C9081 0003/0003 2015-12-28T23:43:04.580799 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#1000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0004/0004 2015-12-28T23:43:04.580859 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0005/0005 2015-12-28T23:43:04.580897 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0006/0006 2015-12-28T23:43:04.580928 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0008/0008 2015-12-28T23:43:04.584563 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#2000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0009/0009 2015-12-28T23:43:04.584609 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0010/0010 2015-12-28T23:43:04.584641 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0011/0011 2015-12-28T23:43:04.584667 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0013/0013 2015-12-28T23:43:05.589513 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#3000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0014/0014 2015-12-28T23:43:05.589579 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0015/0015 2015-12-28T23:43:05.589613 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0016/0016 2015-12-28T23:43:05.589640 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0018/0018 2015-12-28T23:43:08.095165 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#4000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0019/0019 2015-12-28T23:43:08.095235 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0020/0020 2015-12-28T23:43:08.095304 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0021/0021 2015-12-28T23:43:08.095331 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0023/0023 2015-12-28T23:43:12.850883 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#5000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0024/0024 2015-12-28T23:43:12.850995 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0025/0025 2015-12-28T23:43:12.851043 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0026/0026 2015-12-28T23:43:12.851076 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error in "ScanOffsetTest": std::exception: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial 13285/000/0000/PE 88FC33E5681C9081 0030/0030 2015-12-28T23:43:12.856729 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#6000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0031/0031 2015-12-28T23:43:12.856835 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0032/0032 2015-12-28T23:43:12.856884 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0033/0033 2015-12-28T23:43:12.856917 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0035/0035 2015-12-28T23:43:12.860583 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#7000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0036/0036 2015-12-28T23:43:12.860658 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0037/0037 2015-12-28T23:43:12.860695 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0038/0038 2015-12-28T23:43:12.860724 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0040/0040 2015-12-28T23:43:13.865863 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#8000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0041/0041 2015-12-28T23:43:13.865968 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0042/0042 2015-12-28T23:43:13.866013 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0043/0043 2015-12-28T23:43:13.866047 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0045/0045 2015-12-28T23:43:16.371508 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#9000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0046/0046 2015-12-28T23:43:16.371611 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0047/0047 2015-12-28T23:43:16.371657 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0048/0048 2015-12-28T23:43:16.371691 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0050/0050 2015-12-28T23:43:21.125851 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#10000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0051/0051 2015-12-28T23:43:21.125931 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0052/0052 2015-12-28T23:43:21.125965 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0053/0053 2015-12-28T23:43:21.125993 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error in "ScanMaxHitsTest": std::exception: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial 13285/000/0000/PE 88FC33E5681C9081 0057/0057 2015-12-28T23:43:21.130214 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#11000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0058/0058 2015-12-28T23:43:21.130257 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0059/0059 2015-12-28T23:43:21.130286 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0060/0060 2015-12-28T23:43:21.130311 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0062/0062 2015-12-28T23:43:21.133599 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#12000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0063/0063 2015-12-28T23:43:21.133638 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0064/0064 2015-12-28T23:43:21.133667 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0065/0065 2015-12-28T23:43:21.133691 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0067/0067 2015-12-28T23:43:22.137983 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#13000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0068/0068 2015-12-28T23:43:22.138063 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0069/0069 2015-12-28T23:43:22.138097 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0070/0070 2015-12-28T23:43:22.138125 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0072/0072 2015-12-28T23:43:24.643178 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#14000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0073/0073 2015-12-28T23:43:24.643280 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0074/0074 2015-12-28T23:43:24.643317 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0075/0075 2015-12-28T23:43:24.643345 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0077/0077 2015-12-28T23:43:29.399545 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#15000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0078/0078 2015-12-28T23:43:29.399619 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0079/0079 2015-12-28T23:43:29.399656 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0080/0080 2015-12-28T23:43:29.399685 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error in "SkipMaskedRanges": std::exception: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial 13285/000/0000/PE 88FC33E5681C9081 0084/0084 2015-12-28T23:43:29.403753 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#16000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0085/0085 2015-12-28T23:43:29.403801 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0086/0086 2015-12-28T23:43:29.403833 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0087/0087 2015-12-28T23:43:29.403858 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0089/0089 2015-12-28T23:43:29.407338 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#17000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0090/0090 2015-12-28T23:43:29.407383 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0091/0091 2015-12-28T23:43:29.407411 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0092/0092 2015-12-28T23:43:29.407436 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0094/0094 2015-12-28T23:43:30.411922 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#18000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0095/0095 2015-12-28T23:43:30.411991 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0096/0096 2015-12-28T23:43:30.412025 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0097/0097 2015-12-28T23:43:30.412053 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0099/0099 2015-12-28T23:43:32.917301 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#19000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0100/0100 2015-12-28T23:43:32.917375 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0101/0101 2015-12-28T23:43:32.917428 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0102/0102 2015-12-28T23:43:32.917456 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13285/000/0000/PE 88FC33E5681C9081 0104/0104 2015-12-28T23:43:37.672801 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(311.22) "ncbi_socket.c", line 4001: UNK_FUNC --- SOCK#20000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13285/000/0000/PE 88FC33E5681C9081 0105/0105 2015-12-28T23:43:37.672876 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1680: UNK_FUNC --- [URL_Connect; http//www.ncbi.nlm.nih.gov:80/Service/dispd.cgi?service=ID2&address=lcy01-11.buildd(127.0.1.1)&platform=i686-pc-linux-gnu] Failed to connect: Unknown 13285/000/0000/PE 88FC33E5681C9081 0106/0106 2015-12-28T23:43:37.672912 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(310.5) "ncbi_service_connector.c", line 94: UNK_FUNC --- [ID2] Service not found 13285/000/0000/PE 88FC33E5681C9081 0107/0107 2015-12-28T23:43:37.672940 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error in "ScanCheckScores": std::exception: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial Executed 4 test cases. *** 4 failures detected in test suite "Master Test Suite" 13285/000/0000/PE 88FC33E5681C9081 0111/0111 2015-12-28T23:43:37.674799 lcy01-11 UNK_CLIENT 88FC33E5681C9081_0000SID aascan_unit_test stop 201 33.142974968 Command exited with non-zero status 201 real 33.18 user 0.07 sys 0.05 Start time : 12/28/2015 23:43:04 Stop time : 12/28/2015 23:43:37 Load averages: 0.93 2.90 2.75 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 201 make[1]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' fakeroot debian/rules binary-arch dh binary-arch -Dc++ --with autotools_dev dh_testroot -a -O-Dc\+\+ dh_prep -a -O-Dc\+\+ dh_installdirs -a -O-Dc\+\+ debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' debian/rules override_dh_install make[1]: Entering directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool \ debian/ncbi-blast+/usr/bin/project_tree_builder \ debian/ncbi-blast+/usr/lib/ncbi-blast+/libtest_*.so if test -d debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin; then cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin/; fi make[1]: Leaving directory '/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31' dh_installdocs -a -O-Dc\+\+ dh_installchangelogs -a -O-Dc\+\+ dh_installexamples -a -O-Dc\+\+ dh_installman -a -O-Dc\+\+ dh_installcatalogs -a -O-Dc\+\+ dh_installcron -a -O-Dc\+\+ dh_installdebconf -a -O-Dc\+\+ dh_installemacsen -a -O-Dc\+\+ dh_installifupdown -a -O-Dc\+\+ dh_installinfo -a -O-Dc\+\+ dh_installinit -a -O-Dc\+\+ dh_installmenu -a -O-Dc\+\+ dh_installmime -a -O-Dc\+\+ dh_installmodules -a -O-Dc\+\+ dh_installlogcheck -a -O-Dc\+\+ dh_installlogrotate -a -O-Dc\+\+ dh_installpam -a -O-Dc\+\+ dh_installppp -a -O-Dc\+\+ dh_installudev -a -O-Dc\+\+ dh_installgsettings -a -O-Dc\+\+ dh_bugfiles -a -O-Dc\+\+ dh_ucf -a -O-Dc\+\+ dh_lintian -a -O-Dc\+\+ dh_gconf -a -O-Dc\+\+ dh_icons -a -O-Dc\+\+ dh_perl -a -O-Dc\+\+ dh_usrlocal -a -O-Dc\+\+ dh_link -a -O-Dc\+\+ dh_installwm -a -O-Dc\+\+ dh_installxfonts -a -O-Dc\+\+ dh_strip_nondeterminism -a -O-Dc\+\+ dh_compress -a -O-Dc\+\+ dh_fixperms -a -O-Dc\+\+ dh_strip -a -O-Dc\+\+ dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: ncbi-blast+ dh_strip debug symbol extraction: packages to act on: ncbi-blast+ dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 ncbi-blast+ has no unstripped objects, ignoring find: `/build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/debian/ncbi-blast+-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/ncbi-blast+-O5zu5R/ncbi-blast+-2.2.31/debian/ncbi-blast+-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a -O-Dc\+\+ dh_shlibdeps -a -O-Dc\+\+ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/bin/blastx debian/ncbi-blast+/usr/bin/blast_formatter debian/ncbi-blast+/usr/bin/psiblast debian/ncbi-blast+/usr/bin/tblastx debian/ncbi-blast+/usr/bin/deltablast debian/ncbi-blast+/usr/bin/blastp debian/ncbi-blast+/usr/bin/rpsblast+ debian/ncbi-blast+/usr/bin/rpstblastn debian/ncbi-blast+/usr/bin/blastn debian/ncbi-blast+/usr/bin/tblastn were not linked against libmedlars.so (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/bin/blastx debian/ncbi-blast+/usr/bin/blast_formatter debian/ncbi-blast+/usr/bin/psiblast debian/ncbi-blast+/usr/bin/tblastx debian/ncbi-blast+/usr/bin/deltablast debian/ncbi-blast+/usr/bin/blastp debian/ncbi-blast+/usr/bin/rpsblast+ debian/ncbi-blast+/usr/bin/rpstblastn debian/ncbi-blast+/usr/bin/blastn debian/ncbi-blast+/usr/bin/tblastn were not linked against libxformat.so (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/bin/blastx debian/ncbi-blast+/usr/bin/blast_formatter debian/ncbi-blast+/usr/bin/psiblast debian/ncbi-blast+/usr/bin/tblastx debian/ncbi-blast+/usr/bin/deltablast debian/ncbi-blast+/usr/bin/blastp debian/ncbi-blast+/usr/bin/rpsblast+ debian/ncbi-blast+/usr/bin/rpstblastn debian/ncbi-blast+/usr/bin/blastn debian/ncbi-blast+/usr/bin/tblastn were not linked against libpubmed.so (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/bin/blastx debian/ncbi-blast+/usr/bin/blast_formatter debian/ncbi-blast+/usr/bin/psiblast debian/ncbi-blast+/usr/bin/tblastx debian/ncbi-blast+/usr/bin/deltablast debian/ncbi-blast+/usr/bin/blastp debian/ncbi-blast+/usr/bin/rpsblast+ debian/ncbi-blast+/usr/bin/rpstblastn debian/ncbi-blast+/usr/bin/blastn debian/ncbi-blast+/usr/bin/tblastn were not linked against libxcleanup.so (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/bin/blastx debian/ncbi-blast+/usr/bin/blast_formatter debian/ncbi-blast+/usr/bin/psiblast debian/ncbi-blast+/usr/bin/tblastx debian/ncbi-blast+/usr/bin/deltablast debian/ncbi-blast+/usr/bin/blastp debian/ncbi-blast+/usr/bin/rpsblast+ debian/ncbi-blast+/usr/bin/rpstblastn debian/ncbi-blast+/usr/bin/blastn debian/ncbi-blast+/usr/bin/tblastn were not linked against libmlacli.so (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/bin/blastx debian/ncbi-blast+/usr/bin/blast_formatter debian/ncbi-blast+/usr/bin/psiblast debian/ncbi-blast+/usr/bin/tblastx debian/ncbi-blast+/usr/bin/deltablast debian/ncbi-blast+/usr/bin/blastp debian/ncbi-blast+/usr/bin/rpsblast+ debian/ncbi-blast+/usr/bin/rpstblastn debian/ncbi-blast+/usr/bin/blastn debian/ncbi-blast+/usr/bin/tblastn were not linked against libvalid.so (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/bin/blastx debian/ncbi-blast+/usr/bin/blast_formatter debian/ncbi-blast+/usr/bin/psiblast debian/ncbi-blast+/usr/bin/tblastx debian/ncbi-blast+/usr/bin/deltablast debian/ncbi-blast+/usr/bin/blastp debian/ncbi-blast+/usr/bin/rpsblast+ debian/ncbi-blast+/usr/bin/rpstblastn debian/ncbi-blast+/usr/bin/blastn debian/ncbi-blast+/usr/bin/tblastn were not linked against libgbseq.so (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/bin/blastx debian/ncbi-blast+/usr/bin/blast_formatter debian/ncbi-blast+/usr/bin/psiblast debian/ncbi-blast+/usr/bin/tblastx debian/ncbi-blast+/usr/bin/deltablast debian/ncbi-blast+/usr/bin/blastp debian/ncbi-blast+/usr/bin/rpsblast+ debian/ncbi-blast+/usr/bin/rpstblastn debian/ncbi-blast+/usr/bin/blastn debian/ncbi-blast+/usr/bin/tblastn were not linked against libmla.so (they use none of the library's symbols) dh_installdeb -a -O-Dc\+\+ dh_gencontrol -a -O-Dc\+\+ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform i386: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: ncbi-blast+ dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: no debian/ncbi-blast+-dbgsym, skipping package ncbi-blast+ dh_md5sums -a -O-Dc\+\+ dh_builddeb -a -O-Dc\+\+ INFO: pkgstriptranslations version 125 pkgstriptranslations: processing ncbi-blast+ (in debian/ncbi-blast+); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+/DEBIAN/control, package ncbi-blast+, directory debian/ncbi-blast+ DEBUG: wait ncbi-blast+ 1:ncbi-blast+ DEBUG: clear ncbi-blast+ 1:ncbi-blast+ DEBUG: done ncbi-blast+ pkgstripfiles: Truncating usr/share/doc/ncbi-blast+/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncbi-blast+ ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.2.31-3_i386.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../ncbi-blast+_2.2.31-3_i386.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build ncbi-blast+-2.2.31 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151228-2344 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ ncbi-blast+_2.2.31-3_i386.changes: ────────────────────────────────── Format: 1.8 Date: Mon, 28 Dec 2015 12:32:23 +0100 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy Architecture: i386 Version: 2.2.31-3 Distribution: xenial-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 809120 Changes: ncbi-blast+ (2.2.31-3) unstable; urgency=medium . * Drop explicite mentioning of quilt * Enable building architecture independent package separately Closes: #809120 * Override false lintian error * DEP5 fixes Checksums-Sha1: 7c5cb9804e2a18c05bf2e8353f5d5e1a085f9283 9387212 ncbi-blast+_2.2.31-3_i386.deb Checksums-Sha256: 4c88c94cc74aa9a31db4120dce022b77c92eb8cab940b44fefa1a90e0e786022 9387212 ncbi-blast+_2.2.31-3_i386.deb Files: 4a919fc2231fdfca72873879dcea92b3 9387212 science optional ncbi-blast+_2.2.31-3_i386.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ ncbi-blast+_2.2.31-3_i386.deb ───────────────────────────── new debian package, version 2.0. size 9387212 bytes: control archive=3896 bytes. 1282 bytes, 25 lines control 6930 bytes, 105 lines md5sums Package: ncbi-blast+ Version: 2.2.31-3 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 36596 Depends: ncbi-data, python, perl, libbz2-1.0, libc6 (>= 2.15), libgcc1 (>= 1:4.2), libgomp1 (>= 4.9), libpcre3, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. drwxr-xr-x root/root 0 2015-12-28 23:43 ./ drwxr-xr-x root/root 0 2015-12-28 23:43 ./usr/ drwxr-xr-x root/root 0 2015-12-28 23:43 ./usr/bin/ -rwxr-xr-x root/root 202204 2015-12-28 23:43 ./usr/bin/blast_formatter -rwxr-xr-x root/root 91608 2015-12-28 23:43 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 136616 2015-12-28 23:43 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 112084 2015-12-28 23:43 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 46452 2015-12-28 23:43 ./usr/bin/blastdbcp -rwxr-xr-x root/root 165336 2015-12-28 23:43 ./usr/bin/blastn -rwxr-xr-x root/root 165336 2015-12-28 23:43 ./usr/bin/blastp -rwxr-xr-x root/root 165336 2015-12-28 23:43 ./usr/bin/blastx -rwxr-xr-x root/root 54648 2015-12-28 23:43 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 185816 2015-12-28 23:43 ./usr/bin/deltablast -rwxr-xr-x root/root 34204 2015-12-28 23:43 ./usr/bin/dustmasker -rwxr-xr-x root/root 25972 2015-12-28 23:43 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 51346 2015-12-28 23:43 ./usr/bin/legacy_blast -rwxr-xr-x root/root 173528 2015-12-28 23:43 ./usr/bin/makeblastdb -rwxr-xr-x root/root 50544 2015-12-28 23:43 ./usr/bin/makembindex -rwxr-xr-x root/root 136680 2015-12-28 23:43 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 194008 2015-12-28 23:43 ./usr/bin/psiblast -rwxr-xr-x root/root 165336 2015-12-28 23:43 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 161240 2015-12-28 23:43 ./usr/bin/rpstblastn -rwxr-xr-x root/root 165336 2015-12-28 23:43 ./usr/bin/seedtop+ -rwxr-xr-x root/root 34208 2015-12-28 23:43 ./usr/bin/segmasker -rwxr-xr-x root/root 38264 2015-12-28 23:43 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 177624 2015-12-28 23:43 ./usr/bin/tblastn -rwxr-xr-x root/root 165336 2015-12-28 23:43 ./usr/bin/tblastx -rwxr-xr-x root/root 12486 2015-12-28 23:43 ./usr/bin/update_blastdb -rwxr-xr-x root/root 38256 2015-12-28 23:43 ./usr/bin/windowmasker -rwxr-xr-x root/root 5950 2015-12-28 23:43 ./usr/bin/windowmasker_2.2.22_adapter drwxr-xr-x root/root 0 2015-12-28 23:43 ./usr/lib/ drwxr-xr-x root/root 0 2015-12-28 23:43 ./usr/lib/ncbi-blast+/ -rw-r--r-- root/root 869648 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libalign_format.so -rw-r--r-- root/root 320788 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libbiblio.so -rw-r--r-- root/root 631260 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libblast.so -rw-r--r-- root/root 66836 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libblast_services.so -rw-r--r-- root/root 79116 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libblastdb.so -rw-r--r-- root/root 95504 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libblastdb_format.so -rw-r--r-- root/root 513432 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libblastinput.so -rw-r--r-- root/root 70924 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libblastxml.so -rw-r--r-- root/root 144652 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libblastxml2.so -rw-r--r-- root/root 83268 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libcomposition_adjustment.so -rw-r--r-- root/root 402700 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libconnect.so -rw-r--r-- root/root 46232 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libcreaders.so -rw-r--r-- root/root 263440 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libentrez2.so -rw-r--r-- root/root 54544 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libentrez2cli.so -rw-r--r-- root/root 218380 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libgbseq.so -rw-r--r-- root/root 66824 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libgene_info.so -rw-r--r-- root/root 357852 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libgeneral.so -rw-r--r-- root/root 337164 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libgenome_collection.so -rw-r--r-- root/root 87308 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libid1.so -rw-r--r-- root/root 263436 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libid2.so -rw-r--r-- root/root 398608 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libid2_split.so -rw-r--r-- root/root 111880 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libigblast.so -rw-r--r-- root/root 25868 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libmedlars.so -rw-r--r-- root/root 111884 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libmedline.so -rw-r--r-- root/root 62732 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libmla.so -rw-r--r-- root/root 38160 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libmlacli.so -rw-r--r-- root/root 111916 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so -rw-r--r-- root/root 107792 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so -rw-r--r-- root/root 206332 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libncbi_xloader_genbank.so -rw-r--r-- root/root 772484 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libncbi_xreader.so -rw-r--r-- root/root 197996 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libncbi_xreader_cache.so -rw-r--r-- root/root 132724 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libncbi_xreader_id1.so -rw-r--r-- root/root 99996 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libncbi_xreader_id2.so -rw-r--r-- root/root 136460 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libpub.so -rw-r--r-- root/root 29964 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libpubmed.so -rw-r--r-- root/root 140556 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libscoremat.so -rw-r--r-- root/root 5123256 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libseq.so -rw-r--r-- root/root 62732 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libseqcode.so -rw-r--r-- root/root 746884 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libseqdb.so -rw-r--r-- root/root 242956 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libseqedit.so -rw-r--r-- root/root 46412 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libseqmasks_io.so -rw-r--r-- root/root 148752 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libseqset.so -rw-r--r-- root/root 308492 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libseqsplit.so -rw-r--r-- root/root 79164 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libsequtil.so -rw-r--r-- root/root 83212 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libsubmit.so -rw-r--r-- root/root 13512 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libtables.so -rw-r--r-- root/root 239060 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libtaxon1.so -rw-r--r-- root/root 144652 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libvalerr.so -rw-r--r-- root/root 152876 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libvalid.so -rw-r--r-- root/root 206092 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libvariation.so -rw-r--r-- root/root 378140 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libwritedb.so -rw-r--r-- root/root 226572 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxalgoblastdbindex.so -rw-r--r-- root/root 21712 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxalgodustmask.so -rw-r--r-- root/root 9424 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxalgosegmask.so -rw-r--r-- root/root 296216 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxalgowinmask.so -rw-r--r-- root/root 726436 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxalnmgr.so -rw-r--r-- root/root 1602980 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxblast.so -rw-r--r-- root/root 394516 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxblastformat.so -rw-r--r-- root/root 653368 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxcgi.so -rw-r--r-- root/root 857660 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxcleanup.so -rw-r--r-- root/root 525600 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxcompress.so -rw-r--r-- root/root 763324 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxconnect.so -rw-r--r-- root/root 1660204 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxformat.so -rw-r--r-- root/root 386396 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxhtml.so -rw-r--r-- root/root 2420724 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxncbi.so -rw-r--r-- root/root 644388 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxnetblast.so -rw-r--r-- root/root 42256 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxnetblastcli.so -rw-r--r-- root/root 2922332 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxobjmgr.so -rw-r--r-- root/root 1717932 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxobjread.so -rw-r--r-- root/root 21768 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxobjsimple.so -rw-r--r-- root/root 701752 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxobjutil.so -rw-r--r-- root/root 34076 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxregexp.so -rw-r--r-- root/root 1428472 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxser.so -rw-r--r-- root/root 732240 2015-12-28 23:43 ./usr/lib/ncbi-blast+/libxutil.so drwxr-xr-x root/root 0 2015-12-28 23:43 ./usr/share/ drwxr-xr-x root/root 0 2015-12-28 23:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-12-28 23:43 ./usr/share/doc/ncbi-blast+/ -rw-r--r-- root/root 504 2014-11-21 17:20 ./usr/share/doc/ncbi-blast+/README.Debian -rw-r--r-- root/root 970 2015-12-28 23:44 ./usr/share/doc/ncbi-blast+/changelog.Debian.gz -rw-r--r-- root/root 9215 2015-12-28 12:35 ./usr/share/doc/ncbi-blast+/copyright drwxr-xr-x root/root 0 2015-12-28 23:43 ./usr/share/man/ drwxr-xr-x root/root 0 2015-12-28 23:43 ./usr/share/man/man1/ -rw-r--r-- root/root 760 2015-12-28 23:43 ./usr/share/man/man1/ncbi-blast+.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: i386 Build-Space: 333468 Build-Time: 1881 Distribution: xenial-proposed Host Architecture: i386 Install-Time: 18 Job: ncbi-blast+_2.2.31-3.dsc Machine Architecture: amd64 Package: ncbi-blast+ Package-Time: 1903 Source-Version: 2.2.31-3 Space: 333468 Status: successful Version: 2.2.31-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151228-2344 Build needed 00:31:43, 333468k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8768837'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8768837/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8768837'] Unmounting chroot for build PACKAGEBUILD-8768837... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8768837'] Removing build PACKAGEBUILD-8768837