RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux denneed01 3.13.0-51-powerpc64-smp #84-Ubuntu SMP Wed Apr 15 16:03:13 UTC 2015 ppc64 Buildd toolchain package versions: launchpad-buildd_126 python-lpbuildd_126 dpkg-dev_1.17.5ubuntu5.4. Syncing the system clock with the buildd NTP service... 18 May 19:18:45 ntpdate[13257]: adjust time server 10.211.37.1 offset -0.003176 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-7442402', '/home/buildd/filecache-default/c11a9ad9a9a7f8fd186ea187129a5fb922712bf7'] Unpacking chroot for build PACKAGEBUILD-7442402 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-7442402'] Mounting chroot for build PACKAGEBUILD-7442402 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-7442402', 'deb http://ftpmaster.internal/ubuntu wily main universe', 'deb http://ftpmaster.internal/ubuntu wily-security main universe', 'deb http://ftpmaster.internal/ubuntu wily-updates main universe', 'deb http://ftpmaster.internal/ubuntu wily-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-7442402 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-7442402', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-7442402 Ign http://ftpmaster.internal wily InRelease Ign http://archive-team.internal wily InRelease Ign http://ftpmaster.internal wily-security InRelease Ign http://archive-team.internal wily Release.gpg Ign http://ftpmaster.internal wily-updates InRelease Ign http://ftpmaster.internal wily-proposed InRelease Get:1 http://archive-team.internal wily Release [740 B] Get:2 http://ftpmaster.internal wily Release.gpg [933 B] Get:3 http://ftpmaster.internal wily-security Release.gpg [933 B] Get:4 http://ftpmaster.internal wily-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal wily-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal wily Release [217 kB] Get:7 http://archive-team.internal wily/main powerpc Packages Ign http://archive-team.internal wily/main Translation-en Get:8 http://ftpmaster.internal wily-security Release [63.5 kB] Get:9 http://ftpmaster.internal wily-updates Release [63.5 kB] Get:10 http://ftpmaster.internal wily-proposed Release [63.5 kB] Get:11 http://ftpmaster.internal wily/main powerpc Packages [1348 kB] Get:12 http://ftpmaster.internal wily/universe powerpc Packages [6399 kB] Get:13 http://ftpmaster.internal wily/main Translation-en [812 kB] Get:14 http://ftpmaster.internal wily/universe Translation-en [4492 kB] Get:15 http://ftpmaster.internal wily-security/main powerpc Packages [28 B] Get:16 http://ftpmaster.internal wily-security/universe powerpc Packages [28 B] Get:17 http://ftpmaster.internal wily-security/main Translation-en [28 B] Get:18 http://ftpmaster.internal wily-security/universe Translation-en [28 B] Get:19 http://ftpmaster.internal wily-updates/main powerpc Packages [28 B] Get:20 http://ftpmaster.internal wily-updates/universe powerpc Packages [28 B] Get:21 http://ftpmaster.internal wily-updates/main Translation-en [28 B] Get:22 http://ftpmaster.internal wily-updates/universe Translation-en [28 B] Get:23 http://ftpmaster.internal wily-proposed/main powerpc Packages [69.9 kB] Get:24 http://ftpmaster.internal wily-proposed/universe powerpc Packages [435 kB] Get:25 http://ftpmaster.internal wily-proposed/main Translation-en [40.9 kB] Get:26 http://ftpmaster.internal wily-proposed/universe Translation-en [228 kB] Fetched 14.2 MB in 9s (1447 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: adduser dmsetup init libapparmor1 libcap2-bin libcryptsetup4 libdevmapper1.02.1 libfdisk1 libkmod2 systemd systemd-sysv udev The following packages will be upgraded: apt apt-transport-https base-files binutils bsdutils cpp-4.9 debianutils dpkg dpkg-dev g++-4.9 gcc-4.9 gcc-4.9-base gcc-5-base initscripts libapt-pkg4.12 libasan1 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libcap2 libcloog-isl4 libcurl3-gnutls libdpkg-perl libgcc-4.9-dev libgcc1 libgomp1 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libisl13 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libmount1 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libroken18-heimdal librtmp1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-4.9-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login mount openssl passwd patch perl perl-base perl-modules pkg-create-dbgsym sysv-rc sysvinit-utils tzdata util-linux 72 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 41.5 MB of archives. After this operation, 28.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ wily/main base-files powerpc 7.2ubuntu10 [68.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main bsdutils powerpc 1:2.26.2-2ubuntu2 [49.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main debianutils powerpc 4.5 [84.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main dpkg powerpc 1.17.25ubuntu1 [2191 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily-proposed/main libapparmor1 powerpc 2.9.2-0ubuntu1 [23.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main libaudit-common all 1:2.3.7-1ubuntu2 [4176 B] Get:7 http://ftpmaster.internal/ubuntu/ wily/main libaudit1 powerpc 1:2.3.7-1ubuntu2 [33.0 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libpam0g powerpc 1.1.8-3.1ubuntu3 [55.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libpam-modules-bin powerpc 1.1.8-3.1ubuntu3 [33.1 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main libpam-modules powerpc 1.1.8-3.1ubuntu3 [235 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main passwd powerpc 1:4.1.5.1-1.1ubuntu4 [710 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main libuuid1 powerpc 2.26.2-2ubuntu2 [17.0 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main libblkid1 powerpc 2.26.2-2ubuntu2 [101 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main libfdisk1 powerpc 2.26.2-2ubuntu2 [124 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main sysvinit-utils powerpc 2.88dsf-53.2ubuntu12 [37.6 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main sysv-rc all 2.88dsf-53.2ubuntu12 [36.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main mount powerpc 2.26.2-2ubuntu2 [117 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main initscripts powerpc 2.88dsf-53.2ubuntu12 [27.9 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main tzdata all 2015d-1 [183 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main util-linux powerpc 2.26.2-2ubuntu2 [703 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main libdevmapper1.02.1 powerpc 2:1.02.90-2ubuntu1 [96.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main dmsetup powerpc 2:1.02.90-2ubuntu1 [35.6 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main libudev1 powerpc 219-9ubuntu1 [41.2 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main libcryptsetup4 powerpc 2:1.6.1-1ubuntu7 [63.6 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libkmod2 powerpc 18-3ubuntu1 [38.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main libsystemd0 powerpc 219-9ubuntu1 [73.5 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily-proposed/main perl powerpc 5.20.2-6 [2152 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily-proposed/main perl-base powerpc 5.20.2-6 [1104 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily-proposed/main perl-modules all 5.20.2-6 [2501 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main adduser all 3.113+nmu3ubuntu3 [169 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main udev powerpc 219-9ubuntu1 [889 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main libcap2 powerpc 1:2.24-8 [12.6 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main libcap2-bin powerpc 1:2.24-8 [19.7 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main libmount1 powerpc 2.26.2-2ubuntu2 [101 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main systemd powerpc 219-9ubuntu1 [2967 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily/main systemd-sysv powerpc 219-9ubuntu1 [15.8 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily/main init powerpc 1.23ubuntu1 [4106 B] Get:38 http://ftpmaster.internal/ubuntu/ wily/main login powerpc 1:4.1.5.1-1.1ubuntu4 [297 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily-proposed/main gcc-5-base powerpc 5.1.1-5ubuntu4 [16.6 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily-proposed/main libgcc1 powerpc 1:5.1.1-5ubuntu4 [27.3 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily-proposed/main libstdc++6 powerpc 5.1.1-5ubuntu4 [316 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily/main libapt-pkg4.12 powerpc 1.0.9.9ubuntu1 [628 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily/main apt powerpc 1.0.9.9ubuntu1 [977 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily/main libsmartcols1 powerpc 2.26.2-2ubuntu2 [58.4 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily/main libp11-kit0 powerpc 0.23.1-2 [85.1 kB] Get:46 http://ftpmaster.internal/ubuntu/ wily-proposed/main libsqlite3-0 powerpc 3.8.10.1-1 [336 kB] Get:47 http://ftpmaster.internal/ubuntu/ wily-proposed/main libssl1.0.0 powerpc 1.0.2a-1ubuntu1 [733 kB] Get:48 http://ftpmaster.internal/ubuntu/ wily-proposed/main libroken18-heimdal powerpc 1.6~rc2+dfsg-10 [38.9 kB] Get:49 http://ftpmaster.internal/ubuntu/ wily-proposed/main libasn1-8-heimdal powerpc 1.6~rc2+dfsg-10 [131 kB] Get:50 http://ftpmaster.internal/ubuntu/ wily-proposed/main libgssapi-krb5-2 powerpc 1.12.1+dfsg-20 [102 kB] Get:51 http://ftpmaster.internal/ubuntu/ wily-proposed/main libkrb5-3 powerpc 1.12.1+dfsg-20 [237 kB] Get:52 http://ftpmaster.internal/ubuntu/ wily-proposed/main libkrb5support0 powerpc 1.12.1+dfsg-20 [28.7 kB] Get:53 http://ftpmaster.internal/ubuntu/ wily-proposed/main libk5crypto3 powerpc 1.12.1+dfsg-20 [82.4 kB] Get:54 http://ftpmaster.internal/ubuntu/ wily/main librtmp1 powerpc 2.4+20150115.gita107cef-1 [50.7 kB] Get:55 http://ftpmaster.internal/ubuntu/ wily/main libcurl3-gnutls powerpc 7.38.0-3ubuntu3 [156 kB] Get:56 http://ftpmaster.internal/ubuntu/ wily-proposed/main libhcrypto4-heimdal powerpc 1.6~rc2+dfsg-10 [80.4 kB] Get:57 http://ftpmaster.internal/ubuntu/ wily-proposed/main libheimbase1-heimdal powerpc 1.6~rc2+dfsg-10 [27.0 kB] Get:58 http://ftpmaster.internal/ubuntu/ wily-proposed/main libwind0-heimdal powerpc 1.6~rc2+dfsg-10 [47.1 kB] Get:59 http://ftpmaster.internal/ubuntu/ wily-proposed/main libhx509-5-heimdal powerpc 1.6~rc2+dfsg-10 [91.7 kB] Get:60 http://ftpmaster.internal/ubuntu/ wily-proposed/main libkrb5-26-heimdal powerpc 1.6~rc2+dfsg-10 [176 kB] Get:61 http://ftpmaster.internal/ubuntu/ wily-proposed/main libheimntlm0-heimdal powerpc 1.6~rc2+dfsg-10 [15.0 kB] Get:62 http://ftpmaster.internal/ubuntu/ wily-proposed/main libgssapi3-heimdal powerpc 1.6~rc2+dfsg-10 [81.4 kB] Get:63 http://ftpmaster.internal/ubuntu/ wily/main libisl13 powerpc 0.14-2 [376 kB] Get:64 http://ftpmaster.internal/ubuntu/ wily/main libcloog-isl4 powerpc 0.18.3-1 [53.3 kB] Get:65 http://ftpmaster.internal/ubuntu/ wily/main g++-4.9 powerpc 4.9.2-17ubuntu1 [5022 kB] Get:66 http://ftpmaster.internal/ubuntu/ wily/main gcc-4.9 powerpc 4.9.2-17ubuntu1 [5071 kB] Get:67 http://ftpmaster.internal/ubuntu/ wily/main cpp-4.9 powerpc 4.9.2-17ubuntu1 [4644 kB] Get:68 http://ftpmaster.internal/ubuntu/ wily/main binutils powerpc 2.25-5ubuntu7 [2143 kB] Get:69 http://ftpmaster.internal/ubuntu/ wily-proposed/main libgomp1 powerpc 5.1.1-5ubuntu4 [51.6 kB] Get:70 http://ftpmaster.internal/ubuntu/ wily-proposed/main libatomic1 powerpc 5.1.1-5ubuntu4 [7504 B] Get:71 http://ftpmaster.internal/ubuntu/ wily-proposed/main libubsan0 powerpc 5.1.1-5ubuntu4 [96.1 kB] Get:72 http://ftpmaster.internal/ubuntu/ wily/main libstdc++-4.9-dev powerpc 4.9.2-17ubuntu1 [1086 kB] Get:73 http://ftpmaster.internal/ubuntu/ wily/main libgcc-4.9-dev powerpc 4.9.2-17ubuntu1 [423 kB] Get:74 http://ftpmaster.internal/ubuntu/ wily/main libasan1 powerpc 4.9.2-17ubuntu1 [175 kB] Get:75 http://ftpmaster.internal/ubuntu/ wily/main gcc-4.9-base powerpc 4.9.2-17ubuntu1 [16.7 kB] Get:76 http://ftpmaster.internal/ubuntu/ wily/main libpam-runtime all 1.1.8-3.1ubuntu3 [39.8 kB] Get:77 http://ftpmaster.internal/ubuntu/ wily/main libtasn1-6 powerpc 4.5-2 [39.3 kB] Get:78 http://ftpmaster.internal/ubuntu/ wily/main apt-transport-https powerpc 1.0.9.9ubuntu1 [26.0 kB] Get:79 http://ftpmaster.internal/ubuntu/ wily-proposed/main openssl powerpc 1.0.2a-1ubuntu1 [484 kB] Get:80 http://ftpmaster.internal/ubuntu/ wily/main dpkg-dev all 1.17.25ubuntu1 [762 kB] Get:81 http://ftpmaster.internal/ubuntu/ wily/main libdpkg-perl all 1.17.25ubuntu1 [194 kB] Get:82 http://ftpmaster.internal/ubuntu/ wily/main patch powerpc 2.7.5-1 [91.3 kB] Get:83 http://ftpmaster.internal/ubuntu/ wily/main linux-libc-dev powerpc 3.19.0-17.17 [788 kB] Get:84 http://ftpmaster.internal/ubuntu/ wily/main pkg-create-dbgsym all 0.67 [8956 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.5 MB in 41s (996 kB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10581 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.26.2-2ubuntu2_powerpc.deb ... Unpacking libfdisk1:powerpc (2.26.2-2ubuntu2) ... Setting up libfdisk1:powerpc (2.26.2-2ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10586 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-53.2ubuntu12_powerpc.deb ... Unpacking sysvinit-utils (2.88dsf-53.2ubuntu12) over (2.88dsf-53.2ubuntu11) ... Setting up sysvinit-utils (2.88dsf-53.2ubuntu12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10586 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-53.2ubuntu12_all.deb ... Unpacking sysv-rc (2.88dsf-53.2ubuntu12) over (2.88dsf-53.2ubuntu11) ... Setting up sysv-rc (2.88dsf-53.2ubuntu12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10586 files and directories currently installed.) Preparing to unpack .../mount_2.26.2-2ubuntu2_powerpc.deb ... Unpacking mount (2.26.2-2ubuntu2) over (2.25.2-4ubuntu2) ... Setting up mount (2.26.2-2ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10586 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-53.2ubuntu12_powerpc.deb ... Unpacking initscripts (2.88dsf-53.2ubuntu12) over (2.88dsf-53.2ubuntu11) ... Setting up initscripts (2.88dsf-53.2ubuntu12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10586 files and directories currently installed.) Preparing to unpack .../tzdata_2015d-1_all.deb ... Unpacking tzdata (2015d-1) over (2015b-1) ... Setting up tzdata (2015d-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon May 18 23:19:45 UTC 2015. Universal Time is now: Mon May 18 23:19:45 UTC 2015. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10588 files and directories currently installed.) Preparing to unpack .../util-linux_2.26.2-2ubuntu2_powerpc.deb ... Unpacking util-linux (2.26.2-2ubuntu2) over (2.25.2-4ubuntu2) ... Setting up util-linux (2.26.2-2ubuntu2) ... Selecting previously unselected package libdevmapper1.02.1:powerpc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10591 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.90-2ubuntu1_powerpc.deb ... Unpacking libdevmapper1.02.1:powerpc (2:1.02.90-2ubuntu1) ... Selecting previously unselected package dmsetup. Preparing to unpack .../dmsetup_2%3a1.02.90-2ubuntu1_powerpc.deb ... Unpacking dmsetup (2:1.02.90-2ubuntu1) ... Setting up libdevmapper1.02.1:powerpc (2:1.02.90-2ubuntu1) ... Setting up dmsetup (2:1.02.90-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10605 files and directories currently installed.) Preparing to unpack .../libudev1_219-9ubuntu1_powerpc.deb ... Unpacking libudev1:powerpc (219-9ubuntu1) over (219-6ubuntu1) ... Setting up libudev1:powerpc (219-9ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package libcryptsetup4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10605 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.6.1-1ubuntu7_powerpc.deb ... Unpacking libcryptsetup4 (2:1.6.1-1ubuntu7) ... Setting up libcryptsetup4 (2:1.6.1-1ubuntu7) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package libkmod2:powerpc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10611 files and directories currently installed.) Preparing to unpack .../libkmod2_18-3ubuntu1_powerpc.deb ... Unpacking libkmod2:powerpc (18-3ubuntu1) ... Setting up libkmod2:powerpc (18-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10616 files and directories currently installed.) Preparing to unpack .../libsystemd0_219-9ubuntu1_powerpc.deb ... Unpacking libsystemd0:powerpc (219-9ubuntu1) over (219-6ubuntu1) ... Setting up libsystemd0:powerpc (219-9ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10616 files and directories currently installed.) Preparing to unpack .../perl_5.20.2-6_powerpc.deb ... Unpacking perl (5.20.2-6) over (5.20.2-2) ... Preparing to unpack .../perl-base_5.20.2-6_powerpc.deb ... Unpacking perl-base (5.20.2-6) over (5.20.2-2) ... Setting up perl-base (5.20.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10612 files and directories currently installed.) Preparing to unpack .../perl-modules_5.20.2-6_all.deb ... Unpacking perl-modules (5.20.2-6) over (5.20.2-2) ... Selecting previously unselected package adduser. Preparing to unpack .../adduser_3.113+nmu3ubuntu3_all.deb ... Unpacking adduser (3.113+nmu3ubuntu3) ... Setting up adduser (3.113+nmu3ubuntu3) ... Selecting previously unselected package udev. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10701 files and directories currently installed.) Preparing to unpack .../udev_219-9ubuntu1_powerpc.deb ... Unpacking udev (219-9ubuntu1) ... Setting up udev (219-9ubuntu1) ... A chroot environment has been detected, udev not started. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10819 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.24-8_powerpc.deb ... Unpacking libcap2:powerpc (1:2.24-8) over (1:2.24-6) ... Setting up libcap2:powerpc (1:2.24-8) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package libcap2-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10819 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.24-8_powerpc.deb ... Unpacking libcap2-bin (1:2.24-8) ... Setting up libcap2-bin (1:2.24-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10833 files and directories currently installed.) Preparing to unpack .../libmount1_2.26.2-2ubuntu2_powerpc.deb ... Unpacking libmount1:powerpc (2.26.2-2ubuntu2) over (2.25.2-4ubuntu2) ... Setting up libmount1:powerpc (2.26.2-2ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10833 files and directories currently installed.) Preparing to unpack .../systemd_219-9ubuntu1_powerpc.deb ... Unpacking systemd (219-9ubuntu1) ... Setting up systemd (219-9ubuntu1) ... Created symlink from /etc/systemd/system/getty.target.wants/getty@tty1.service to /lib/systemd/system/getty@.service. Created symlink from /etc/systemd/system/multi-user.target.wants/remote-fs.target to /lib/systemd/system/remote-fs.target. Created symlink from /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service to /lib/systemd/system/systemd-timesyncd.service. Initializing machine ID from random generator. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11494 files and directories currently installed.) Preparing to unpack .../systemd-sysv_219-9ubuntu1_powerpc.deb ... Unpacking systemd-sysv (219-9ubuntu1) ... Setting up systemd-sysv (219-9ubuntu1) ... Selecting previously unselected package init. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11511 files and directories currently installed.) Preparing to unpack .../init_1.23ubuntu1_powerpc.deb ... Unpacking init (1.23ubuntu1) ... Setting up init (1.23ubuntu1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11514 files and directories currently installed.) Preparing to unpack .../gcc-5-base_5.1.1-5ubuntu4_powerpc.deb ... Unpacking gcc-5-base:powerpc (5.1.1-5ubuntu4) over (5-20150401-0ubuntu1) ... Setting up gcc-5-base:powerpc (5.1.1-5ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11514 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a5.1.1-5ubuntu4_powerpc.deb ... Unpacking libgcc1:powerpc (1:5.1.1-5ubuntu4) over (1:5-20150401-0ubuntu1) ... Setting up libgcc1:powerpc (1:5.1.1-5ubuntu4) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11514 files and directories currently installed.) Preparing to unpack .../libstdc++6_5.1.1-5ubuntu4_powerpc.deb ... Unpacking libstdc++6:powerpc (5.1.1-5ubuntu4) over (4.9.2-10ubuntu12) ... Setting up libstdc++6:powerpc (5.1.1-5ubuntu4) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11515 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.9.9ubuntu1_powerpc.deb ... Unpacking libapt-pkg4.12:powerpc (1.0.9.9ubuntu1) over (1.0.9.7ubuntu3) ... Setting up libapt-pkg4.12:powerpc (1.0.9.9ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11515 files and directories currently installed.) Preparing to unpack .../apt_1.0.9.9ubuntu1_powerpc.deb ... Unpacking apt (1.0.9.9ubuntu1) over (1.0.9.7ubuntu3) ... Setting up apt (1.0.9.9ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11515 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.26.2-2ubuntu2_powerpc.deb ... Unpacking libsmartcols1:powerpc (2.26.2-2ubuntu2) over (2.25.2-4ubuntu2) ... Setting up libsmartcols1:powerpc (2.26.2-2ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11515 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.1-2_powerpc.deb ... Unpacking libp11-kit0:powerpc (0.23.1-2) over (0.20.7-1) ... Preparing to unpack .../libsqlite3-0_3.8.10.1-1_powerpc.deb ... Unpacking libsqlite3-0:powerpc (3.8.10.1-1) over (3.8.7.4-1) ... Preparing to unpack .../libssl1.0.0_1.0.2a-1ubuntu1_powerpc.deb ... Unpacking libssl1.0.0:powerpc (1.0.2a-1ubuntu1) over (1.0.1f-1ubuntu11) ... 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Preparing to unpack .../dpkg-dev_1.17.25ubuntu1_all.deb ... Unpacking dpkg-dev (1.17.25ubuntu1) over (1.17.24ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.17.25ubuntu1_all.deb ... Unpacking libdpkg-perl (1.17.25ubuntu1) over (1.17.24ubuntu1) ... Preparing to unpack .../patch_2.7.5-1_powerpc.deb ... Unpacking patch (2.7.5-1) over (2.7.4-2) ... Preparing to unpack .../linux-libc-dev_3.19.0-17.17_powerpc.deb ... Unpacking linux-libc-dev:powerpc (3.19.0-17.17) over (3.19.0-11.11) ... Preparing to unpack .../pkg-create-dbgsym_0.67_all.deb ... Unpacking pkg-create-dbgsym (0.67) over (0.65) ... Setting up perl-modules (5.20.2-6) ... Setting up perl (5.20.2-6) ... Setting up libp11-kit0:powerpc (0.23.1-2) ... Setting up libsqlite3-0:powerpc (3.8.10.1-1) ... Setting up libssl1.0.0:powerpc (1.0.2a-1ubuntu1) ... Checking for services that may need to be restarted...done. Checking for services that may need to be restarted...done. Setting up libroken18-heimdal:powerpc (1.6~rc2+dfsg-10) ... Setting up libasn1-8-heimdal:powerpc (1.6~rc2+dfsg-10) ... Setting up libkrb5support0:powerpc (1.12.1+dfsg-20) ... Setting up libk5crypto3:powerpc (1.12.1+dfsg-20) ... Setting up libkrb5-3:powerpc (1.12.1+dfsg-20) ... Setting up libgssapi-krb5-2:powerpc (1.12.1+dfsg-20) ... Setting up librtmp1:powerpc (2.4+20150115.gita107cef-1) ... Setting up libcurl3-gnutls:powerpc (7.38.0-3ubuntu3) ... Setting up libhcrypto4-heimdal:powerpc (1.6~rc2+dfsg-10) ... Setting up libheimbase1-heimdal:powerpc (1.6~rc2+dfsg-10) ... Setting up libwind0-heimdal:powerpc (1.6~rc2+dfsg-10) ... Setting up libhx509-5-heimdal:powerpc (1.6~rc2+dfsg-10) ... Setting up libkrb5-26-heimdal:powerpc (1.6~rc2+dfsg-10) ... Setting up libheimntlm0-heimdal:powerpc (1.6~rc2+dfsg-10) ... Setting up libgssapi3-heimdal:powerpc (1.6~rc2+dfsg-10) ... Setting up libisl13:powerpc (0.14-2) ... Setting up libcloog-isl4:powerpc (0.18.3-1) ... Setting up gcc-4.9-base:powerpc (4.9.2-17ubuntu1) ... Setting up cpp-4.9 (4.9.2-17ubuntu1) ... Setting up binutils (2.25-5ubuntu7) ... Setting up libgomp1:powerpc (5.1.1-5ubuntu4) ... Setting up libatomic1:powerpc (5.1.1-5ubuntu4) ... Setting up libasan1:powerpc (4.9.2-17ubuntu1) ... Setting up libubsan0:powerpc (5.1.1-5ubuntu4) ... Setting up libgcc-4.9-dev:powerpc (4.9.2-17ubuntu1) ... Setting up gcc-4.9 (4.9.2-17ubuntu1) ... Setting up libstdc++-4.9-dev:powerpc (4.9.2-17ubuntu1) ... Setting up g++-4.9 (4.9.2-17ubuntu1) ... Setting up libtasn1-6:powerpc (4.5-2) ... Setting up apt-transport-https (1.0.9.9ubuntu1) ... Setting up openssl (1.0.2a-1ubuntu1) ... Setting up libdpkg-perl (1.17.25ubuntu1) ... Setting up patch (2.7.5-1) ... Setting up dpkg-dev (1.17.25ubuntu1) ... Setting up linux-libc-dev:powerpc (3.19.0-17.17) ... Setting up pkg-create-dbgsym (0.67) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-7442402', 'powerpc', 'wily-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=wily-proposed', '--purpose=PRIMARY', '--build-debug-symbols', '--architecture=powerpc', '--comp=universe', 'ncbi-blast+_2.2.30-3.dsc'] Initiating build PACKAGEBUILD-7442402 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.13.0-51-powerpc64-smp #84-Ubuntu SMP Wed Apr 15 16:03:13 UTC 2015 ppc Automatic build of ncbi-blast+_2.2.30-3 on denneed01 by sbuild/powerpc 1.170.5 Build started at 20150518-1919 ****************************************************************************** ncbi-blast+_2.2.30-3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: autotools-dev (>= 20100122), debhelper (>= 9), dpkg-dev (>= 1.16.1), libboost-test-dev, libbz2-dev, libc0.3-dev (>= 2.13-9~) [hurd-i386], libpcre3-dev, quilt, time, zlib1g-dev Checking for already installed source dependencies... autotools-dev: missing debhelper: missing dpkg-dev: already installed (1.17.25ubuntu1 >= 1.16.1 is satisfied) libboost-test-dev: missing libbz2-dev: missing libpcre3-dev: missing quilt: missing time: missing zlib1g-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install autotools-dev debhelper libboost-test-dev libbz2-dev libpcre3-dev quilt time zlib1g-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor diffstat file gettext gettext-base groff-base intltool-debian libasprintf0c2 libboost-test1.55-dev libboost-test1.55.0 libboost1.55-dev libcroco3 libglib2.0-0 libicu52 libmagic1 libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff libboost1.55-doc libboost-atomic1.55-dev libboost-chrono1.55-dev libboost-context1.55-dev libboost-coroutine1.55-dev libboost-date-time1.55-dev libboost-exception1.55-dev libboost-filesystem1.55-dev libboost-graph1.55-dev libboost-graph-parallel1.55-dev libboost-iostreams1.55-dev libboost-locale1.55-dev libboost-log1.55-dev libboost-math1.55-dev libboost-mpi1.55-dev libboost-mpi-python1.55-dev libboost-program-options1.55-dev libboost-python1.55-dev libboost-random1.55-dev libboost-regex1.55-dev libboost-serialization1.55-dev libboost-signals1.55-dev libboost-system1.55-dev libboost-thread1.55-dev libboost-timer1.55-dev libboost-wave1.55-dev libboost1.55-tools-dev libmpfrc++-dev libntl-dev less www-browser libmail-box-perl procmail graphviz default-mta mail-transport-agent Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper dh-apparmor diffstat file gettext gettext-base groff-base intltool-debian libasprintf0c2 libboost-test-dev libboost-test1.55-dev libboost-test1.55.0 libboost1.55-dev libbz2-dev libcroco3 libglib2.0-0 libicu52 libmagic1 libpcre3-dev libpcrecpp0 libpipeline1 libunistring0 libxml2 man-db po-debconf quilt time zlib1g-dev 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After this operation, 157 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 powerpc 1:5.20-1ubuntu2 [206 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0c2 powerpc 0.19.2-2ubuntu1 [6384 B] Get:3 http://ftpmaster.internal/ubuntu/ wily-proposed/main libglib2.0-0 powerpc 2.45.1-2 [961 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 powerpc 1.4.0-1 [24.2 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily-proposed/main libicu52 powerpc 52.1-9 [6616 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main libxml2 powerpc 2.9.2+dfsg1-3 [587 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main groff-base powerpc 1.22.3-1 [1229 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils powerpc 9.0.6ubuntu1 [172 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main man-db powerpc 2.7.0.2-5 [838 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main libboost-test1.55.0 powerpc 1.55.0+dfsg-3ubuntu2 [162 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 powerpc 0.6.8-3 [70.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main libpcrecpp0 powerpc 2:8.35-3.3ubuntu1 [15.4 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 powerpc 0.9.3-5.2ubuntu1 [254 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main file powerpc 1:5.20-1ubuntu2 [20.1 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main gettext-base powerpc 0.19.2-2ubuntu1 [44.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main time powerpc 1.7-25 [26.0 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main autotools-dev all 20140911.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main gettext powerpc 0.19.2-2ubuntu1 [795 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily-proposed/main dh-apparmor all 2.9.2-0ubuntu1 [11.5 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150507ubuntu1 [737 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main diffstat powerpc 1.59-1 [20.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main libboost1.55-dev powerpc 1.55.0+dfsg-3ubuntu2 [5783 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libboost-test1.55-dev powerpc 1.55.0+dfsg-3ubuntu2 [202 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main libboost-test-dev powerpc 1.55.0.2 [2918 B] Get:27 http://ftpmaster.internal/ubuntu/ wily/main libbz2-dev powerpc 1.0.6-7 [30.5 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main libpcre3-dev powerpc 2:8.35-3.3ubuntu1 [311 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main quilt all 0.63-3 [272 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main zlib1g-dev powerpc 1:1.2.8.dfsg-2ubuntu1 [164 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 16s (1189 kB/s) Selecting previously unselected package libmagic1:powerpc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11511 files and directories currently installed.) Preparing to unpack .../libmagic1_1%3a5.20-1ubuntu2_powerpc.deb ... Unpacking libmagic1:powerpc (1:5.20-1ubuntu2) ... Selecting previously unselected package libasprintf0c2:powerpc. Preparing to unpack .../libasprintf0c2_0.19.2-2ubuntu1_powerpc.deb ... Unpacking libasprintf0c2:powerpc (0.19.2-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:powerpc. 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Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.2-2ubuntu1_powerpc.deb ... Unpacking gettext-base (0.19.2-2ubuntu1) ... Selecting previously unselected package time. Preparing to unpack .../time_1.7-25_powerpc.deb ... Unpacking time (1.7-25) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20140911.1_all.deb ... Unpacking autotools-dev (20140911.1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.2-2ubuntu1_powerpc.deb ... Unpacking gettext (0.19.2-2ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.2_all.deb ... Unpacking intltool-debian (0.35.0+20060710.2) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package dh-apparmor. 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Unpacking libboost-test-dev:powerpc (1.55.0.2) ... Selecting previously unselected package libbz2-dev:powerpc. Preparing to unpack .../libbz2-dev_1.0.6-7_powerpc.deb ... Unpacking libbz2-dev:powerpc (1.0.6-7) ... Selecting previously unselected package libpcre3-dev:powerpc. Preparing to unpack .../libpcre3-dev_2%3a8.35-3.3ubuntu1_powerpc.deb ... Unpacking libpcre3-dev:powerpc (2:8.35-3.3ubuntu1) ... Selecting previously unselected package quilt. Preparing to unpack .../archives/quilt_0.63-3_all.deb ... Unpacking quilt (0.63-3) ... Selecting previously unselected package zlib1g-dev:powerpc. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2ubuntu1_powerpc.deb ... Unpacking zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu1) ... Setting up libmagic1:powerpc (1:5.20-1ubuntu2) ... Setting up libasprintf0c2:powerpc (0.19.2-2ubuntu1) ... Setting up libglib2.0-0:powerpc (2.45.1-2) ... No schema files found: doing nothing. Setting up libpipeline1:powerpc (1.4.0-1) ... Setting up libicu52:powerpc (52.1-9) ... Setting up libxml2:powerpc (2.9.2+dfsg1-3) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-5) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-test1.55.0:powerpc (1.55.0+dfsg-3ubuntu2) ... Setting up libcroco3:powerpc (0.6.8-3) ... Setting up libpcrecpp0:powerpc (2:8.35-3.3ubuntu1) ... Setting up libunistring0:powerpc (0.9.3-5.2ubuntu1) ... Setting up file (1:5.20-1ubuntu2) ... Setting up gettext-base (0.19.2-2ubuntu1) ... Setting up time (1.7-25) ... Setting up autotools-dev (20140911.1) ... Setting up gettext (0.19.2-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up dh-apparmor (2.9.2-0ubuntu1) ... Setting up debhelper (9.20150507ubuntu1) ... Setting up diffstat (1.59-1) ... Setting up libboost1.55-dev:powerpc (1.55.0+dfsg-3ubuntu2) ... Setting up libboost-test1.55-dev:powerpc (1.55.0+dfsg-3ubuntu2) ... Setting up libboost-test-dev:powerpc (1.55.0.2) ... Setting up libbz2-dev:powerpc (1.0.6-7) ... Setting up libpcre3-dev:powerpc (2:8.35-3.3ubuntu1) ... Setting up quilt (0.63-3) ... Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.21-0ubuntu4 make_4.0-8.1 dpkg-dev_1.17.25ubuntu1 gcc-4.9_4.9.2-17ubuntu1 g++-4.9_4.9.2-17ubuntu1 binutils_2.25-5ubuntu7 libstdc++-4.9-dev_4.9.2-17ubuntu1 libstdc++6_5.1.1-5ubuntu4 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Mon May 18 13:54:53 2015 UTC using RSA key ID 326D8438 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.2.30-3.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.2.30 dpkg-source: info: unpacking ncbi-blast+_2.2.30.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.2.30-3.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying fix_compilation dpkg-source: info: applying allow_gcc5 dpkg-buildpackage: source package ncbi-blast+ dpkg-buildpackage: source version 2.2.30-3 dpkg-buildpackage: source distribution unstable dpkg-source --before-build ncbi-blast+-2.2.30 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev --with quilt dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ dh_quilt_unpatch -O-Dc\+\+ Removing patch allow_gcc5 Restoring c++/src/build-system/configure Restoring c++/src/build-system/configure.ac Removing patch fix_compilation Restoring c++/src/util/regexp/pcretest.c Removing patch fix_configure Restoring c++/configure.orig Removing patch skip_services_unit_test Restoring c++/src/objtools/blast/services/unit_test/Makefile.blast_services_unit_test.app Removing patch use_pie_for_apps Restoring c++/src/build-system/Makefile.app.in Removing patch no_multiarch_rpath Restoring c++/src/build-system/configure Restoring c++/src/build-system/configure.ac Removing patch fix_lib_deps Restoring c++/src/connect/Makefile.xconnect.lib Restoring c++/src/connect/ext/Makefile.xconnext.lib Restoring c++/src/util/xregexp/Makefile.xregexp.lib Restoring c++/src/util/Makefile.util.lib Restoring c++/src/util/compress/api/Makefile.compress.lib Restoring c++/src/util/sequtil/Makefile.sequtil.lib Restoring c++/src/objmgr/util/Makefile.util.lib Restoring c++/src/objmgr/split/Makefile.id2_split.lib Restoring c++/src/build-system/library_relations.txt Restoring c++/src/objects/scoremat/Makefile.scoremat.lib Restoring c++/src/objects/general/Makefile.general.lib Restoring c++/src/objects/seq/Makefile.seq.lib Restoring c++/src/objects/id1/Makefile.id1.lib Restoring c++/src/objects/blast/Makefile.blast.lib Restoring c++/src/objects/blast/Makefile.xnetblastcli.lib Restoring c++/src/objects/seqset/Makefile.seqset.lib Restoring c++/src/objects/pub/Makefile.pub.lib Restoring c++/src/objects/genomecoll/Makefile.genome_collection.lib Restoring c++/src/objects/seqedit/Makefile.seqedit.lib Restoring c++/src/objects/blastxml/Makefile.blastxml.lib Restoring c++/src/objects/blastdb/Makefile.blastdb.lib Restoring c++/src/objects/seqsplit/Makefile.seqsplit.lib Restoring c++/src/objects/submit/Makefile.submit.lib Restoring c++/src/objects/medline/Makefile.medline.lib Restoring c++/src/objects/id2/Makefile.id2.lib Restoring c++/src/objects/biblio/Makefile.biblio.lib Restoring c++/src/objects/seqcode/Makefile.seqcode.lib Restoring c++/src/algo/dustmask/Makefile.xalgodustmask.lib Restoring c++/src/algo/segmask/Makefile.xalgosegmask.lib Restoring c++/src/algo/blast/core/Makefile.blast.lib Restoring c++/src/algo/blast/Makefile.blast_macros.mk Restoring c++/src/algo/blast/blastinput/Makefile.blastinput.lib Restoring c++/src/algo/blast/api/Makefile.xblast.lib Restoring c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app Restoring c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib Restoring c++/src/algo/blast/format/Makefile.xblastformat.lib Restoring c++/src/algo/winmask/Makefile.xalgowinmask.lib Restoring c++/src/html/Makefile.html.lib Restoring c++/src/corelib/Makefile.test_boost.lib Restoring c++/src/corelib/Makefile.test_mt.lib Restoring c++/src/cgi/Makefile.cgi.lib Restoring c++/src/serial/Makefile.serial.lib Restoring c++/src/objtools/simple/Makefile.xobjsimple.lib Restoring c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib Restoring c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib Restoring c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib Restoring c++/src/objtools/blast/services/Makefile.blast_services.lib Restoring c++/src/objtools/alnmgr/Makefile.alnmgr.lib Restoring c++/src/objtools/readers/Makefile.xobjread.lib Restoring c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib Restoring c++/src/objtools/align_format/Makefile.align_format.lib Restoring c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib Restoring c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib Restoring c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib Restoring c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib Restoring c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib Removing patch legacy_rename_rpsblast Restoring c++/src/app/blast/legacy_blast.pl Removing patch hurd_fixes Restoring c++/src/connect/ncbi_socket_cxx.cpp Restoring c++/src/connect/ext/ncbi_localnet.c Restoring c++/src/build-system/configure Restoring c++/src/build-system/configure.ac Removing patch enable_clean_after_failed_compile Restoring c++/src/build-system/new_module.sh.in No patches applied debian/rules override_dh_clean make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.30' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:78: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30' debian/rules build-arch dh build-arch -Dc++ --with autotools_dev --with quilt dh_testdir -a -O-Dc\+\+ dh_autotools-dev_updateconfig -a -O-Dc\+\+ dh_quilt_patch -a -O-Dc\+\+ Applying patch enable_clean_after_failed_compile patching file c++/src/build-system/new_module.sh.in Applying patch hurd_fixes patching file c++/src/build-system/configure patching file c++/src/build-system/configure.ac Hunk #1 succeeded at 1778 (offset 220 lines). patching file c++/src/connect/ncbi_socket_cxx.cpp patching file c++/src/connect/ext/ncbi_localnet.c Applying patch legacy_rename_rpsblast patching file c++/src/app/blast/legacy_blast.pl Applying patch fix_lib_deps (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/blast/core/Makefile.blast.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/blast/dbindex/Makefile.xalgoblastdbindex.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/blast/format/Makefile.xblastformat.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/winmask/Makefile.xalgowinmask.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/cgi/Makefile.cgi.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/html/Makefile.html.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/blast/Makefile.xnetblastcli.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/align_format/Makefile.align_format.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/alnmgr/Makefile.alnmgr.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/readers/Makefile.xobjread.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/seqmasks_io/Makefile.seqmasks_io.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/simple/Makefile.xobjsimple.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/blast/seqdb_reader/Makefile.seqdb.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/data_loaders/blastdb/Makefile.ncbi_xloader_blastdb_rmt.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/blast/api/Makefile.xblast.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/blast/blastinput/Makefile.blastinput.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/dustmask/Makefile.xalgodustmask.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/connect/Makefile.xconnect.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/connect/ext/Makefile.xconnext.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/blast/Makefile.blast.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/blastxml/Makefile.blastxml.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/scoremat/Makefile.scoremat.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/seqedit/Makefile.seqedit.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/submit/Makefile.submit.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objmgr/util/Makefile.util.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/blast/services/Makefile.blast_services.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xloader_genbank.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/data_loaders/genbank/Makefile.ncbi_xreader.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/util/compress/api/Makefile.compress.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/util/sequtil/Makefile.sequtil.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/corelib/Makefile.test_boost.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/corelib/Makefile.test_mt.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/biblio/Makefile.biblio.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/blastdb/Makefile.blastdb.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/general/Makefile.general.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/genomecoll/Makefile.genome_collection.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/id1/Makefile.id1.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/id2/Makefile.id2.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/medline/Makefile.medline.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/pub/Makefile.pub.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/seq/Makefile.seq.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/seqcode/Makefile.seqcode.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/seqset/Makefile.seqset.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objects/seqsplit/Makefile.seqsplit.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/serial/Makefile.serial.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/util/Makefile.util.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/util/xregexp/Makefile.xregexp.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/segmask/Makefile.xalgosegmask.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objmgr/split/Makefile.id2_split.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/objtools/blast/seqdb_writer/Makefile.writedb.lib (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/blast/Makefile.blast_macros.mk (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/algo/blast/dbindex/makeindex/Makefile.makeindex.app (Stripping trailing CRs from patch; use --binary to disable.) patching file c++/src/build-system/library_relations.txt Applying patch no_multiarch_rpath patching file c++/src/build-system/configure patching file c++/src/build-system/configure.ac Applying patch use_pie_for_apps patching file c++/src/build-system/Makefile.app.in Applying patch skip_services_unit_test patching file c++/src/objtools/blast/services/unit_test/Makefile.blast_services_unit_test.app Applying patch fix_configure patching file c++/configure.orig Applying patch fix_compilation patching file c++/src/util/regexp/pcretest.c Applying patch allow_gcc5 patching file c++/src/build-system/configure patching file c++/src/build-system/configure.ac Now at patch allow_gcc5 debian/rules override_dh_auto_configure make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.30' cd c++ && LD_LIBRARY_PATH=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking build system type... powerpc-unknown-linux-gnu checking host system type... powerpc-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default 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/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/cache/Makefile config.status: creating /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb/Makefile config.status: creating /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/Makefile config.status: creating /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/format/Makefile config.status: creating /build/buildd/ncbi-blast+-2.2.30/c++/./Makefile config.status: creating /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib/ncbicfg.c is updated Platform not defined for Linux ppc -- please fix me project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/3.11.3/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/corelib TMPL=corelib -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 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-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:822:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:1790) [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:1743:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:924) [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:1806:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:924) [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:1831:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:924) [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:1863:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:924) [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag.cpp:3025:44: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbiapp.hpp:343) [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/syslog.cpp -o syslog.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT 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-I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include 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-Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbierror.cpp -o ncbierror.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /bin/rm -f libxncbi.so .libxncbi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxncbi.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/test_boost.cpp -o test_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/corelib/teamcity_messages.cpp -o teamcity_messages.o /bin/rm -f libtest_boost.so .libtest_boost.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_boost.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC test_boost.o teamcity_messages.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_boost.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libtest_boost.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libtest_boost.so /bin/ln -f .test_boost.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util TMPL=util -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread 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-D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/format_guess.cpp -o format_guess.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/ascii85.cpp -o ascii85.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/md5.cpp -o md5.o /build/buildd/ncbi-blast+-2.2.30/c++/src/util/md5.cpp: In member function 'void ncbi::CMD5::Finalize(unsigned char*)': /build/buildd/ncbi-blast+-2.2.30/c++/src/util/md5.cpp:155:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] reinterpret_cast(m_In)[14] = static_cast(m_Bits); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/md5.cpp:156:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] reinterpret_cast(m_In)[15] = static_cast(m_Bits >> 32); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/file_obsolete.cpp -o file_obsolete.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/unicode.cpp -o unicode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/dictionary.cpp -o dictionary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/dictionary_util.cpp -o dictionary_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/sgml_entity.cpp -o sgml_entity.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/static_set.cpp -o static_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/transmissionrw.cpp -o transmissionrw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/miscmath.c -o miscmath.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/mutex_pool.cpp -o mutex_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/ncbi_cache.cpp -o ncbi_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/line_reader.cpp -o line_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/util_exception.cpp -o util_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/uttp.cpp -o uttp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/multi_writer.cpp -o multi_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/itransaction.cpp -o itransaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/thread_pool.cpp -o thread_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/scheduler.cpp -o scheduler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/distribution.cpp -o distribution.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/rangelist.cpp -o rangelist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/util_misc.cpp -o util_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/histogram_binning.cpp -o histogram_binning.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:30:0, from /build/buildd/ncbi-blast+-2.2.30/c++/src/util/histogram_binning.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/table_printer.cpp -o table_printer.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxutil.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxutil.so /bin/ln -f .xutil.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xutil.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxregexp.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxregexp.so /bin/ln -f .xregexp.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/xregexp' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/xregexp' make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp -o msvc_prj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f project_tree_builder /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/buildd/ncbi-blast+-2.2.30/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Z BZ2 PCRE Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GCRYPT GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON23 PYTHON24 PYTHON25 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Threads C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO MONGODB PROJECTS: enabled: cgi local_lbsm connext ncbi_crypt serial objects app algo disabled: bdb dbapi ctools gui gbench Tools / flags / paths: /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.mk Configuration header: /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build && make all_r or simply run make in the current directory Alternatively, cd /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build && make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30' debian/rules override_dh_auto_build make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.30' cd c++/BUILD/build && \ make -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build' /usr/bin/make -w -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build' cd corelib/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' cd corelib/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' cd util/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' cd util/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial' cd serial/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/serial TMPL=serial -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/typeinfo.cpp -o typeinfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/typeinfo.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objectinfo.cpp -o objectinfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objectinfo.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objectiter.cpp -o objectiter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectiter.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objectiter.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objectio.cpp -o objectio.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectiter.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectio.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objectio.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/typeref.cpp -o typeref.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/typeref.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/stdtypes.cpp -o stdtypes.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/stdtypes.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/enumerated.cpp -o enumerated.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/enumerated.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/enumerated.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/ptrinfo.cpp -o ptrinfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/ptrinfo.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/autoptrinfo.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/continfo.cpp -o continfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/continfo.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/stltypes.cpp -o stltypes.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/stltypes.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/classinfob.cpp -o classinfob.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/classinfob.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/member.cpp -o member.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/member.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/classinfo.cpp -o classinfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/classinfo.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/variant.cpp -o variant.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/variant.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/choice.cpp -o choice.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/choice.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/choiceptr.cpp -o choiceptr.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/choiceptr.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/choiceptr.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/aliasinfo.cpp -o aliasinfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/aliasinfo.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistr.cpp -o objistr.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistr.cpp:46: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostr.cpp -o objostr.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostr.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objcopy.cpp -o objcopy.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objcopy.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objcopy.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/iterator.cpp -o iterator.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectiter.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/iterator.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/serial.cpp -o serial.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/serial.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/delaybuf.cpp -o delaybuf.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/delaybuf.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/pack_string.cpp -o pack_string.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/pack_string.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/pack_string.cpp:32: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/exception.cpp -o exception.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/exception.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objhook.cpp -o objhook.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objhook.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostrasn.cpp -o objostrasn.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostrasn.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrasn.cpp -o objistrasn.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrasn.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostrasnb.cpp -o objostrasnb.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostrasnb.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostrasnb.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrasnb.cpp -o objistrasnb.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistrasnb.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrasnb.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostrxml.cpp -o objostrxml.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostrxml.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostrxml.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrxml.cpp -o objistrxml.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistrxml.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrxml.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrxml.cpp: In member function 'virtual std::string ncbi::CObjectIStreamXml::ReadFileHeader()': /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrxml.cpp:583:33: warning: variable 'docType' set but not used [-Wunused-but-set-variable] CTempString docType = ReadName(SkipWS()); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostrjson.cpp -o objostrjson.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostrjson.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objostrjson.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrjson.cpp -o objistrjson.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistrjson.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/objistrjson.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/serialobject.cpp -o serialobject.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/serialobject.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/pathhook.cpp -o pathhook.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxser.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxser.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxser.so /bin/ln -f .xser.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial/datatool' cd serial/datatool/ && /usr/bin/make -w APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool TMPL=datatool -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/datatool.cpp -o datatool.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/datatool.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/statictype.cpp -o statictype.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/statictype.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/enumtype.cpp -o enumtype.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/enumerated.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/enumtype.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/reftype.cpp -o reftype.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/reftype.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/unitype.cpp -o unitype.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/unitype.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/value.cpp -o value.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/module.cpp -o module.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/generate.cpp -o generate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/filecode.cpp -o filecode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/code.cpp -o code.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/fileutil.cpp -o fileutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/alexer.cpp -o alexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/aparser.cpp -o aparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/parser.cpp -o parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/lexer.cpp -o lexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/comments.cpp -o comments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/srcutil.cpp -o srcutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f datatool /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/general' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh general all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/general' cd objects/general/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/general' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general TMPL=general -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general__.cpp -o general__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/Date.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general___.cpp -o general___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/Date_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/uoconv.cpp -o uoconv.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/uoconv.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/uoconv.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libgeneral.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libgeneral.so /bin/ln -f .general.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/general' cd objects/biblio/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biblio' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh biblio all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biblio' cd objects/biblio/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biblio' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio TMPL=biblio -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio__.cpp -o biblio__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/biblio/Affil_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/biblio/Affil.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/Affil.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio___.cpp -o biblio___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/Affil_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/citation_base.cpp -o citation_base.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/citation_base.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libbiblio.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libbiblio.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libbiblio.so /bin/ln -f .biblio.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biblio' cd algo/blast/composition_adjustment/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/composition_adjustment' cd algo/blast/composition_adjustment/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/compo_heap.c:142:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/redo_alignment.c:190:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/redo_alignment.c:205:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libcomposition_adjustment.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libcomposition_adjustment.so /bin/ln -f .composition_adjustment.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/composition_adjustment' cd util/tables/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/tables' cd util/tables/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/tables' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util/tables TMPL=tables -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libtables.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libtables.so /bin/ln -f .tables.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/tables' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/tables' cd connect/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect' cd connect/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/connect TMPL=xconnect -w all /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnect to make__connect_common per /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/.#lock-map. make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_lbsm.c -o ncbi_lbsm.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_lbsm_ipc.c -o ncbi_lbsm_ipc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_lbsmd.c -o ncbi_lbsmd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_service_connector.c: In function 's_ParseHeader': /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_service_connector.c:168:17: warning: format '%n' expects argument of type 'int *', but argument 7 has type 'unsigned int *' [-Wformat=] if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_service_connector.c:169:21: warning: format '%n' expects argument of type 'int *', but argument 5 has type 'unsigned int *' [-Wformat=] || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbi_lbsm.o ncbi_lbsm_ipc.o ncbi_lbsmd.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxncbi -lnsl -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxconnect.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxconnect.so /bin/ln -f .xconnect.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect' cd algo/blast/core/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/core' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/core' cd algo/blast/core/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/core' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core TMPL=blast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/aa_ungapped.c:489:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/aa_ungapped.c:496:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_OneHit': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/aa_ungapped.c:756:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/aa_ungapped.c:763:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_engine.c:1261:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_engine.c:1387:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_engine.c:1465:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_aascan.c: In function 'BlastChooseProteinScanSubject': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_aascan.c:572:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_aascan.c:575:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_aascan.c:580:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c: In function 's_NaChooseScanSubject': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:296:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:298:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c: In function 's_SmallNaChooseScanSubject': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1325:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1332:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1339:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1341:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1348:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1350:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1352:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1359:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1365:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1369:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_1Mod4; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1373:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_2Mod4; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:1377:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c: In function 's_MBChooseScanSubject': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2583:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2585:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2587:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2589:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2597:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2599:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2601:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2606:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2608:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2610:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2612:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2618:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2621:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2624:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2627:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2638:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c: In function 'BlastChooseNucleotideScanSubjectAny': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2657:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2660:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastSmallNaScanSubject_Any; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_nascan.c:2662:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c: In function 's_IsSeedMasked': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:489:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c: In function 'BlastNaWordFinder': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1605:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1606:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1618:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1619:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1626:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1627:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1640:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c: In function 'MB_IndexedWordFinder': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1706:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1708:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c: In function 'BlastChooseNaExtend': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1778:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_MBLookup; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1782:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1785:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1787:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1791:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1795:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1801:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtend; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1805:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_NaLookup; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1809:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1812:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/na_ungapped.c:1814:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_stat.c:5088:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function] static double s_CalculateNormalProbability(double x_, double eps_) ^ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 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-I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libblast.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libblast.so /bin/ln -f .blast.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/core' cd objects/medline/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medline' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh medline all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medline' cd objects/medline/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medline' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline TMPL=medline -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medline' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline__.cpp -o medline__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/medline/DocRef_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/medline/DocRef.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/DocRef.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline___.cpp -o medline___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/DocRef_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedline.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libmedline.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libmedline.so /bin/ln -f .medline.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pub' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh pub all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub' /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pub' cd objects/pub/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pub' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub TMPL=pub -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pub' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub/pub__.cpp -o pub__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/pub/Pub_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/pub/Pub.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub/Pub.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub/pub__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub/pub___.cpp -o pub___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub/Pub_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub/pub___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpub.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libpub.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libpub.so /bin/ln -f .pub.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pub' cd objects/seqcode/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqcode' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh seqcode all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqcode' cd objects/seqcode/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqcode' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode TMPL=seqcode -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode/seqcode__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqcode/seqcode___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqcode.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libseqcode.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libseqcode.so /bin/ln -f .seqcode.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqcode' cd util/sequtil/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/sequtil' /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/sequtil' cd util/sequtil/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util/sequtil TMPL=sequtil -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libsequtil.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libsequtil.so /bin/ln -f .sequtil.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/sequtil' cd objects/seq/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/Makefile.sources builddir=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -w all make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' status=0 ; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../$x ; \ (cd $d && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status Platform not defined for Linux ppc -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqalign' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqalign' Platform not defined for Linux ppc -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqblock' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqblock' Platform not defined for Linux ppc -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub/pub.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqfeat' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqfeat' Platform not defined for Linux ppc -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc' Platform not defined for Linux ppc -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqres' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqres' Platform not defined for Linux ppc -- please fix me /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqtable' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.12.0 make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqtable' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh seq all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub/pub.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqblock/seqblock.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqalign/seqalign.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqres/seqres.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq' /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' cd objects/seq/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq TMPL=seq -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq__.cpp -o seq__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/Align_def.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqalign__.cpp -o seqalign__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/Seq_align.cpp:1371:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909) [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/Seq_align.cpp:1375:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Std_seg.hpp:79) [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/Seq_align.cpp:1380:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/Seq_align.cpp:1354) [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqblock__.cpp -o seqblock__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqfeat__.cpp -o seqfeat__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqloc__.cpp -o seqloc__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqres__.cpp -o seqres__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqtable__.cpp -o seqtable__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqtable/BVector_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqtable/BVector_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq___.cpp -o seq___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/Align_def_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqalign___.cpp -o seqalign___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqblock___.cpp -o seqblock___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqfeat___.cpp -o seqfeat___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqloc___.cpp -o seqloc___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqres___.cpp -o seqres___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include seqtable___.cpp -o seqtable___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_data.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seqport_util.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seqport_util.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_id_tree.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_id_tree.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_id_handle.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_mapper.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_loc_mapper_base.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seqlocinfo.cpp:32: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/sofa_type.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/sofa_map.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_loc_from_string.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_loc_from_string.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -I/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libseq.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libseq.so /bin/ln -f .seq.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastdb' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh blastdb all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb' /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastdb' cd objects/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb TMPL=blastdb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb/blastdb__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastdb/blastdb___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libblastdb.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libblastdb.so /bin/ln -f .blastdb.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastdb' cd util/creaders/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/creaders' /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/creaders' cd util/creaders/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util/creaders TMPL=creaders -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/creaders' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libcreaders.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libcreaders.so /bin/ln -f .creaders.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.creaders.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/creaders' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/creaders' cd objects/genomecoll/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genomecoll' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh genome_collection all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh gencoll_client all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genomecoll' cd objects/genomecoll/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genomecoll' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll TMPL=genome_collection -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgenome_collection.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libgenome_collection.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libgenome_collection.so /bin/ln -f .genome_collection.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genomecoll' cd objects/seqset/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqset' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh seqset all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/medline/medline.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqset' cd objects/seqset/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqset' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset TMPL=seqset -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset__.cpp -o seqset__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/Bioseq_set.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset___.cpp -o seqset___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/gb_release_file.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/gb_release_file.cpp:32: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqset.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libseqset.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libseqset.so /bin/ln -f .seqset.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqset' cd objects/scoremat/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/scoremat' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh scoremat all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat' /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/scoremat' cd objects/scoremat/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat TMPL=scoremat -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat/scoremat__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat/scoremat___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libscoremat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libscoremat.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libscoremat.so /bin/ln -f .scoremat.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/scoremat' cd objects/seqedit/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqedit' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh seqedit all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqalign/seqalign.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqedit' cd objects/seqedit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit TMPL=seqedit -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit/seqedit__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqedit/seqedit___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqedit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libseqedit.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libseqedit.so /bin/ln -f .seqedit.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqedit' cd objmgr/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr' cd objmgr/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr TMPL=objmgr -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_table_setters.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_table_setters.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_table_info.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_annot_info.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_annot_info.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/table_field.cpp -o table_field.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/table_field.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_map.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_map_switch.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_map_switch.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/snp_annot_info.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/snp_annot_info.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_types_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_types_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_loc_cvt.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_selector.cpp -o annot_selector.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_selector.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seqdesc.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_descr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_descr_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/feat_ci.cpp -o feat_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_types_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/feat_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/feat_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/graph_ci.cpp -o graph_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_types_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/graph_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/graph_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_object.cpp -o annot_object.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_object.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_object_index.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_object_index.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_ci.cpp -o annot_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_types_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_info.cpp -o tse_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/data_source.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_info.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_info_object.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_entry_info.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_base_info.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_set_info.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_info.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/data_source.cpp -o data_source.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/data_source.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/data_source.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/priority.cpp -o priority.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_info.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/priority.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/prefetch_impl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/prefetch_impl.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/prefetch_actions.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/prefetch_actions.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope.cpp -o scope.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/heap_scope.cpp -o heap_scope.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/heap_scope.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope_impl.cpp -o scope_impl.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope_impl.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope_info.cpp -o scope_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_info.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope_info.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_handle.cpp -o tse_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/tse_handle.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_map.cpp -o seq_map.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_map.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_map.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_map.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_map_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_map_ci.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_entry_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_annot_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_annot_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_types_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_table_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_table_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_entry_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_handle.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/tse_handle.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_annot_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_annot_handle.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/align_ci.cpp -o align_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_types_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/align_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/align_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/data_loader.cpp -o data_loader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/data_loader.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/handle_range.cpp -o handle_range.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/handle_range.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/handle_range.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/handle_range.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/handle_range_map.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/object_manager.cpp -o object_manager.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/object_manager.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_vector.cpp -o seq_vector.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_vector.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_vector_ci.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seqdesc.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_descr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seqdesc_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_split_info.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_split_info.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_chunk_info.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_chunk_info.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_ci.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_type_index.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_type_index.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_loc_mapper.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_align_mapper.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_collector.cpp -o annot_collector.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_selector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_collector.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader_factory.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/data_loader_factory.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/mapped_feat.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/mapped_feat.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_feat_handle.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqres/Seq_graph_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqres/Seq_graph.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_graph_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_graph_handle.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_align_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_align_handle.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/tse_assigner.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope_transaction.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/edit_commands_impl.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/edit_saver.cpp -o edit_saver.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/edit_saver.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/edit_saver.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/edit_saver.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/edit_saver.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/edits_db_saver.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/edits_db_saver.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_finder.cpp -o annot_finder.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/annot_finder.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/gc_assembly_parser.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/gc_assembly_parser.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxobjmgr.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxobjmgr.so /bin/ln -f .xobjmgr.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:55: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'ncbi::CRef ncbi::CSeqDBVol::x_GetTaxDefline(int, int, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1005:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::iterator TBDLLIter; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1006:43: warning: typedef 'TBDLLConstIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::const_iterator TBDLLConstIter; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'std::list > ncbi::CSeqDBVol::x_GetTaxonomy(int, int, ncbi::CRef, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1058:43: warning: typedef 'TBDLLIter' locally defined but not used [-Wunused-local-typedefs] typedef TBDLL::iterator TBDLLIter; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'int ncbi::CSeqDBIsam::x_DiffCharLease(const string&, ncbi::CSeqDBMemLease&, const string&, ncbi::CSeqDBIsam::TIndx, Uint4, ncbi::CSeqDBIsam::TIndx, bool, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:450:9: warning: variable 'result' set but not used [-Wunused-but-set-variable] int result(-1); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:943:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libseqdb.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libseqdb.so /bin/ln -f .seqdb.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader' cd objects/submit/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/submit' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh submit all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/biblio/biblio.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/submit' cd objects/submit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit TMPL=submit -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit/submit__.cpp -o submit__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/submit/Contact_info_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/submit/Contact_info.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit/Contact_info.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit/submit__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit/submit___.cpp -o submit___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit/Contact_info_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/submit/submit___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsubmit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libsubmit.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libsubmit.so /bin/ln -f .submit.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/submit' cd objtools/readers/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/readers' cd objtools/readers/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers TMPL=xobjread -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/read_util.cpp -o read_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/read_util.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/format_guess_ex.cpp:45: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_read.cpp -o agp_read.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/agp_read.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_read.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/agp_read.hpp:61) [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/agp_read.hpp:52) [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_validate_reader.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/aln_reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/aln_reader.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/bed_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/cigar.cpp -o cigar.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/cigar.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/cigar.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/fasta.cpp -o fasta.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/fasta.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/fasta_aln_builder.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/getfeature.cpp -o getfeature.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/featuredump.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/getfeature.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/getfeature.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/gff_reader.hpp:48, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff_reader.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/microarray_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/microarray_reader.cpp:86:0: /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/microarray_reader.hpp: In constructor 'ncbi::objects::CMicroArrayReader::CMicroArrayReader(int)': /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/microarray_reader.hpp:114:10: warning: 'ncbi::objects::CMicroArrayReader::m_usescore' will be initialized after [-Wreorder] bool m_usescore; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/microarray_reader.hpp:113:31: warning: 'std::vector >::size_type ncbi::objects::CMicroArrayReader::m_columncount' [-Wreorder] vector::size_type m_columncount; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/microarray_reader.cpp:99:1: warning: when initialized here [-Wreorder] CMicroArrayReader::CMicroArrayReader( ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/phrap.cpp -o phrap.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/phrap.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/reader_base.cpp -o reader_base.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/reader_base.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/reader_base.cpp:87:0: /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/reader_base.hpp: In constructor 'ncbi::objects::CReaderBase::CReaderBase(ncbi::objects::CReaderBase::TReaderFlags)': /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/reader_base.hpp:320:16: warning: 'ncbi::objects::CReaderBase::m_pCanceler' will be initialized after [-Wreorder] ICanceled* m_pCanceler; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/reader_base.hpp:317:24: warning: 'ncbi::objects::CReaderBase::TReaderFlags ncbi::objects::CReaderBase::m_iFlags' [-Wreorder] TReaderFlags m_iFlags; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/reader_base.cpp:147:1: warning: when initialized here [-Wreorder] CReaderBase::CReaderBase( ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/readfeat.cpp -o readfeat.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/readfeat.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/rm_reader.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Object_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Object_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/wiggle_reader.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/gff3_sofa.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff3_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gtf_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Object_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Object_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff2_data.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff2_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff2_reader.cpp: In member function 'virtual bool ncbi::objects::CGff2Reader::x_ParseFeatureGff(const string&, ncbi::objects::CGff2Reader::TAnnots&, ncbi::objects::IMessageListener*)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gff2_reader.cpp:381:37: warning: unused variable 'table' [-Wunused-variable] CSeq_annot::TData::TFtable& table = pAnnot->SetData().SetFtable(); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/gvf_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/vcf_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/User_object_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/User_object.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/source_mod_parser.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/source_mod_parser.cpp: In member function 'void ncbi::objects::CSourceModParser::x_ApplyMods(ncbi::objects::CAutoInitDesc&, ncbi::CTempString)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/source_mod_parser.cpp:648:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( colon_location == string::npos ) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/fasta_exception.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/fasta_exception.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/agp_converter.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/agp_converter.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/ucscregion_reader.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjread.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o message_listener.o line_error.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lsubmit -lseqset -lseq -lpub -lgeneral -lxser -lcreaders -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxobjread.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxobjread.so /bin/ln -f .xobjread.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/readers' cd objmgr/util/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/util' cd objmgr/util/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/util' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util TMPL=util -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/weight.cpp -o weight.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/weight.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/sequence.cpp -o sequence.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/sequence.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/feature.cpp -o feature.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/feature.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/seqtitle.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/create_defline.cpp -o create_defline.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/MolInfo_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/MolInfo.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/create_defline.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/create_defline.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/obj_sniff.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/obj_sniff.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/seq_align_util.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxobjutil.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxobjutil.so /bin/ln -f .xobjutil.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/util' cd objtools/seqmasks_io/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/seqmasks_io' cd objtools/seqmasks_io/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seqdesc.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libseqmasks_io.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libseqmasks_io.so /bin/ln -f .seqmasks_io.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/seqmasks_io' cd objects/variation/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/variation' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh variation all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqfeat/seqfeat.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/general/general.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/pub/pub.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation' /usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/variation' cd objects/variation/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/variation' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation TMPL=variation -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/variation' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation/variation__.cpp -o variation__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation/variation__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation/variation___.cpp -o variation___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/variation/variation___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libvariation.so .libvariation.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvariation.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC variation__.o variation___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libvariation.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libvariation.so /bin/ln -f .variation.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/variation' cd algo/blast/dbindex/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex' cd algo/blast/dbindex/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:274) [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/dbindex/sequence_istream.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/dbindex/dbindex.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxalgoblastdbindex.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxalgoblastdbindex.so /bin/ln -f .xalgoblastdbindex.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex' cd algo/dustmask/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/dustmask' /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/dustmask' cd algo/dustmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/dustmask' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask TMPL=xalgodustmask -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp -o symdust.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/tempstr.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbistr.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:1848:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2316:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Username; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2317:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_AppName; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2319:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2336:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2337:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:45:0, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbistr.hpp:3741:22: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Encoded; ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:48, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbi_param.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_map.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:50, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbiapp.hpp:577:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_map.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:50, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp: In member function 'std::auto_ptr > > ncbi::CSymDustMasker::operator()(const sequence_type&, ncbi::CSymDustMasker::size_type, ncbi::CSymDustMasker::size_type)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:218:35: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res( new TMaskList ); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp: At global scope: /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:289:55: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] CSymDustMasker::operator()( const sequence_type & seq ) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp: In member function 'void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector >&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:299:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res = (*this)( seq ); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:298:59: warning: typedef 'locs_type' locally defined but not used [-Wunused-local-typedefs] typedef std::vector< CConstRef< objects::CSeq_loc > > locs_type; ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp: In member function 'ncbi::CRef ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/dustmask/symdust.cpp:313:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] std::auto_ptr< TMaskList > res = (*this)( seq ); ^ /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxalgodustmask.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxalgodustmask.so /bin/ln -f .xalgodustmask.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/dustmask' cd algo/winmask/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/winmask' /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/winmask' cd algo/winmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask TMPL=xalgowinmask -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/winmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/tempstr.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbistr.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbistd.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:1848:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2316:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Username; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2317:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_AppName; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2319:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2336:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2337:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbistd.hpp:37:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbicntr.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbiobj.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbistr.hpp:3741:22: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Encoded; ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbi_param.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_map.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbiapp.hpp:577:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_map.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:111:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_window.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/seq_masker_istat.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_util.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:274) [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/winmask/win_mask_config.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/winmask/win_mask_config.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxalgowinmask.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxalgowinmask.so /bin/ln -f .xalgowinmask.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/winmask' cd objects/blast/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh blast all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/scoremat/scoremat.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' cd objects/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast TMPL=blast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/blast__.cpp -o blast__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Bla_com_opt_db_res_by_orga_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Bla_com_opt_db_res_by_orga.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/Bla_com_opt_db_res_by_orga.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/blast__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/blast___.cpp -o blast___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/Bla_com_opt_db_res_by_orga_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/blast___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/names.cpp -o names.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/names.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/names.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxnetblast.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxnetblast.so /bin/ln -f .xnetblast.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' cd objects/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast TMPL=xnetblastcli -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/blastclient.cpp -o blastclient.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/blastclient_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/blastclient.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/blastclient.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blast/blastclient_.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxnetblastcli.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxnetblastcli.so /bin/ln -f .xnetblastcli.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' cd algo/blast/api/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/api' /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/api' cd algo/blast/api/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api TMPL=xblast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_aux.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_cxx.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_local_priv.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_setup_cxx.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_handle.cpp:98:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_options_handle.cpp:104:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blastx_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/pssm_engine.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/local_blast.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/remote_blast.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/bl2seq.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_objmgr_tools.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psibl2seq.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/local_db_adapter.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/psiblast.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_impl.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_impl.cpp: In member function 'void ncbi::blast::CPsiBlastImpl::x_ExtractQueryFromPssm()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_impl.cpp:122:23: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] m_Query.Reset(new CObjMgrFree_QueryFactory(query_bioseq)); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_iteration.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psi_pssm_input.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/msa_pssm_input.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_aux_priv.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function 'void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/psiblast_aux_priv.cpp:474:41: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef seq_fetcher(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_aux_priv.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_aux_priv.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/dust_filter.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/rps_aux.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/search_strategy.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/setup_factory.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/prelim_stage.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/traceback_stage.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/uniform_search.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/local_search.cpp -o local_search.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/scoremat/Pssm.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/local_search.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/local_search.cpp: In member function 'virtual ncbi::CRef ncbi::blast::CLocalPssmSearch::Run()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/local_search.cpp:171:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(query)); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_results.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_results.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/remote_search.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/query_data.cpp -o query_data.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/query_data.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/objmgr_query_data.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/objmgrfree_query_data.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/blast_dbindex.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/split_query.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/split_query_cxx.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/split_query_aux_priv.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/split_query.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/split_query_blk.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/winmask_filter.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/rpsblast_local.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/seedtop.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seedtop.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seedtop.cpp: In member function 'void ncbi::blast::CSeedTop::x_ParsePattern()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/seedtop.cpp:73:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i<(*unit).length(); ++i) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/cdd_pssm_input.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/psiblast.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/api/deltablast.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxblast.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/api' cd objtools/blast/services/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services' /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services' cd objtools/blast/services/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/services TMPL=blast_services -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=NETBLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/services/blast_services.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast_services.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libblast_services.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libblast_services.so /bin/ln -f .blast_services.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgene_info.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libgene_info.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libgene_info.so /bin/ln -f .gene_info.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader' cd objects/id1/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id1' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1 && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh id1 all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1' /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id1' cd objects/id1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1 TMPL=id1 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1/id1__.cpp -o id1__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1/id1__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1/id1___.cpp -o id1___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id1/id1___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libid1.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libid1.so /bin/ln -f .id1.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id1' cd objects/seqsplit/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqsplit' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh seqsplit all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqset/seqset.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seq/seq.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqalign/seqalign.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqsplit' cd objects/seqsplit/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit TMPL=seqsplit -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqsplit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libseqsplit.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libseqsplit.so /bin/ln -f .seqsplit.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqsplit' cd objects/id2/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id2' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2 && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh id2 all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqsplit/seqsplit.asn /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2' /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id2' cd objects/id2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2 TMPL=id2 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2/id2__.cpp -o id2__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2/id2__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2/id2___.cpp -o id2___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/id2/id2___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libid2.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libid2.so /bin/ln -f .id2.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id2' cd util/compress/api/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/api' /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/api' cd util/compress/api/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api TMPL=compress -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:3325:27: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE int mz_zip_reader_filename_compare(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, const char *pR, mz_uint r_len) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:3314:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_reader_string_equal(const char *pA, const char *pB, mz_uint len, mz_uint flags) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:3225:39: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE const mz_uint8 *mz_zip_reader_get_cdh(mz_zip_archive *pZip, mz_uint file_index) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:2991:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_reader_filename_less(const mz_zip_array *pCentral_dir_array, const mz_zip_array *pCentral_dir_offsets, mz_uint l_index, mz_uint r_index) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:2918:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_push_back(mz_zip_archive *pZip, mz_zip_array *pArray, const void *pElements, size_t n) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:2913:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_ensure_room(mz_zip_archive *pZip, mz_zip_array *pArray, size_t n) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:2906:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_resize(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_size, mz_uint growing) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:2900:31: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE mz_bool mz_zip_array_reserve(mz_zip_archive *pZip, mz_zip_array *pArray, size_t new_capacity, mz_uint growing) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:2885:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void mz_zip_array_clear(mz_zip_archive *pZip, mz_zip_array *pArray) ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:2431:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_record_match(tdefl_compressor *d, mz_uint match_len, mz_uint match_dist) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:2423:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_record_literal(tdefl_compressor *d, mz_uint8 lit) ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/api/miniz/miniz.c:2255:28: warning: always_inline function might not be inlinable [-Wattributes] static MZ_FORCEINLINE void tdefl_find_match(tdefl_compressor *d, mz_uint lookahead_pos, mz_uint max_dist, mz_uint max_match_len, mz_uint *pMatch_dist, mz_uint *pMatch_len) ^ /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxcompress.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxcompress.so /bin/ln -f .xcompress.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/api' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/genbank/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/blob_id.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/seqref.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/blob_id.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/split_parser.cpp -o split_parser.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bio_object_id.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/impl/tse_info.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/split_parser.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xreader.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader-static.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xreader-static.dep /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o split_parser.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -ldl -lnsl -lz -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xreader.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xreader.so /bin/ln -f .ncbi_xreader.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache-static.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -ldl -lnsl -lz -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xreader_cache.so /bin/ln -f .ncbi_xreader_cache.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1-static.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -ldl -lnsl -lz -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xreader_id1.so /bin/ln -f .ncbi_xreader_id1.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2-static.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -ldl -lnsl -lz -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xreader_id2.so /bin/ln -f .ncbi_xreader_id2.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd objtools/data_loaders/genbank/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank-static.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lbz2 -ldl -lnsl -lz -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xloader_genbank.so /bin/ln -f .ncbi_xloader_genbank.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/alnmgr/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/alnmgr' /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/alnmgr' cd objtools/alnmgr/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr TMPL=alnmgr -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_builders.cpp: In function 'void ncbi::BuildAln(ncbi::TAnchoredAlnVec&, ncbi::CAnchoredAln&, const ncbi::CAlnUserOptions&, ncbi::TAlnSeqIdIRef)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_builders.cpp:551:46: warning: typedef 'TPairwiseAlnVector' locally defined but not used [-Wunused-local-typedefs] typedef CAnchoredAln::TPairwiseAlnVector TPairwiseAlnVector; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmap.cpp:1469:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmerger.cpp:1223:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnsegments.cpp:308:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_inst.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/Date.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/general/general__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/alntext.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/alnmgr/score_builder_base.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/score_builder_base.cpp: In function 'bool ncbi::s_IsProteinToGenomic(ncbi::objects::CScope&, const ncbi::objects::CSeq_align&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/alnmgr/score_builder_base.cpp:519:20: warning: unused variable 'id1' [-Wunused-variable] const CSeq_id& id1 = align.GetSeq_id(1); ^ /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxalnmgr.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxalnmgr.so /bin/ln -f .xalnmgr.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/alnmgr' cd cgi/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/cgi' /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/cgi' cd cgi/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/cgi' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/cgi TMPL=cgi -w all /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_cgi to make__cgi_common per /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/.#lock-map. make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxcgi.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxcgi.so /bin/ln -f .xcgi.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/cgi' cd html/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/html' /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/html' cd html/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/html' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/html TMPL=html -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxhtml.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxhtml.so /bin/ln -f .xhtml.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/html' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/html' cd objtools/align_format/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format' /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format' cd objtools/align_format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format TMPL=align_format -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/align_format_util.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static std::map, ncbi::CRef > ncbi::align_format::CAlignFormatUtil::HspListToHitMap(std::vector >, const ncbi::objects::CSeq_align_set&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/align_format_util.cpp:1493:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= seqIdList.size()) { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/showdefline.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/showalign.cpp -o showalign.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/align_format/showalign.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/showalign.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::string&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/showalign.cpp:4409:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/showalign.cpp:4409:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/tabular.cpp -o tabular.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/tabular.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/align_format/vectorscreen.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/vectorscreen.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/seqalignfilter.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/aln_printer.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libalign_format.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libalign_format.so /bin/ln -f .align_format.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format' cd objtools/blast/blastdb_format/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format' cd objtools/blast/blastdb_format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libblastdb_format.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libblastdb_format.so /bin/ln -f .blastdb_format.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xloader_blastdb.so /bin/ln -f .ncbi_xloader_blastdb.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' cd connect/ext/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/ext' /usr/bin/make[4] (Makefile.connext.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xconnext.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/ext' cd connect/ext/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xconnext UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/ext' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ext TMPL=xconnext -w all /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_xconnext to make__ext_common per /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ext/.#lock-map. make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/ext' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ext/ncbi_ifconf.c -o ncbi_ifconf.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ext/ncbi_crypt.c -o ncbi_crypt.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ext/ncbi_dblb.c -o ncbi_dblb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ext/ncbi_iprange.c -o ncbi_iprange.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ext/ncbi_localnet.c -o ncbi_localnet.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/connect/ext/ncbi_dblb_svcmapper.cpp -o ncbi_dblb_svcmapper.o /bin/rm -f libxconnext.so .libxconnext.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnext.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC ncbi_ifconf.o ncbi_crypt.o ncbi_dblb.o ncbi_iprange.o ncbi_localnet.o ncbi_dblb_svcmapper.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxconnect -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnext.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxconnext.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxconnext.so /bin/ln -f .xconnext.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xconnext.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/ext' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/ext' cd algo/blast/blastinput/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/blastinput/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput TMPL=blastinput -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_input.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_scope_src.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_args.cpp:45: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blastp_args.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/rmblastn_args.cpp:25: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/blastx_args.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/tblastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/tblastx_args.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/psiblast_args.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/rpsblast_args.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/igblastn_args.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/igblastp_args.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/deltablast_args.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lxconnext -lxconnect -lncbi_xreader -lxconnext -lxconnect -lid1 -lid2 -lseqsplit -lxcompress -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libblastinput.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libblastinput.so /bin/ln -f .blastinput.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput' cd objects/blastxml/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh blastxml all File blastxml.module not found. Using defaults... Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml' /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml' cd objects/blastxml/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml TMPL=blastxml -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml/blastxml__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml/blastxml___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxser -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libblastxml.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libblastxml.so /bin/ln -f .blastxml.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml' cd objects/blastxml2/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml2' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2 && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh blastxml2 all File blastxml2.module not found. Using defaults... Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2' /usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml2' cd objects/blastxml2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2 TMPL=blastxml2 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastxml2/BlastOutput_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastxml2/BlastOutput.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2/BlastOutput.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2/blastxml2__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2/BlastOutput_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblastxml2.so .libblastxml2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libblastxml2.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libblastxml2.so /bin/ln -f .blastxml2.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml2' cd objects/entrez2/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2 && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh entrez2 all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2' /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2 TMPL=entrez2 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/entrez2__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/entrez2___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libentrez2.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libentrez2.so /bin/ln -f .entrez2.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2 TMPL=entrez2cli -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2cli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libentrez2cli.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libentrez2cli.so /bin/ln -f .entrez2cli.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' cd objects/taxon1/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon1' cd /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1 && /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/new_module.sh taxon1 all Platform not defined for Linux ppc -- please fix me /usr/bin/make -w -f /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/buildd/ncbi-blast+-2.2.30/c++ DATATOOL=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool MODULE_SEARCH=/build/buildd/ncbi-blast+-2.2.30/c++/src all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1' /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/datatool -oR /build/buildd/ncbi-blast+-2.2.30/c++ -opm /build/buildd/ncbi-blast+-2.2.30/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.12.0 make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1' /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon1' cd objects/taxon1/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1 TMPL=taxon1 -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/taxon1__.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stltypes.hpp:46, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialimpl.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/taxon1___.cpp:2: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/taxon1.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/taxon1.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/cache.cpp -o cache.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/cache.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/utils.cpp -o utils.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/taxon1.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/utils.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/taxon1/taxon1.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objects/taxon1/ctreecont.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libtaxon1.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libtaxon1.so /bin/ln -f .taxon1.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon1' cd corelib/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' cd algo/blast/format/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/format' /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/format' cd algo/blast/format/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format TMPL=xblastformat -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_results.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blastfmtutil.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blastxml_format.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blastxml2_format.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/blast_format.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blast_format.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blast_format.cpp:52:0: /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blast_format.cpp:54:0: /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/blast_format.cpp:470:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/data4xmlformat.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/data4xmlformat.cpp:41:0: /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/data4xml2format.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/data4xml2format.cpp:40:0: /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/data4xml2format.cpp: In member function 'virtual int ncbi::CCmdLineBlastXML2ReportData::GetQueryGeneticCode() const': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/data4xml2format.cpp:343:11: warning: unused variable 'blast_prog' [-Wunused-variable] EProgram blast_prog = GetBlastTask(); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/build_archive.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/format/blast_format.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/format/vecscreen_run.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblastformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxblast -lalign_format -lxalnmgr -lxobjmgr -lxnetblast -lscoremat -lblastxml -lseq -lgeneral -lxser -ltables -lxncbi -lblastxml2 -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxblastformat.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxblastformat.so /bin/ln -f .xblastformat.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/format' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lentrez2cli -lblastxml -lblastxml2 -lentrez2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lnsl -lz -lbz2 -ldl -lm -lpthread -o blastinput_unit_test strip blastinput_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blastinput_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o makembindex strip makembindex /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f makembindex /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/makembindex make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/igblast/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/igblast' /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/igblast' cd algo/blast/igblast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/igblast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/igblast TMPL=igblast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/igblast/igblast.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lblast -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxalnmgr -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libigblast.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libigblast.so /bin/ln -f .igblast.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.igblast.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/igblast' cd objtools/simple/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/simple' /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/simple' cd objtools/simple/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/simple TMPL=xobjsimple -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/simple/simple_om.cpp -o simple_om.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/simple/simple_om.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/simple/simple_om.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxobjsimple.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxobjsimple.so /bin/ln -f .xobjsimple.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/simple' cd algo/blast/unit_tests/api/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function 'Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:258:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] Uint4 end_value = *((int *) & end_bytes); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::FullyMaskedSequence::test_method()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:875:10: warning: unused variable 'caught_exception' [-Wunused-variable] bool caught_exception = false; ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0: /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/test_boost.hpp:109:5: note: in definition of macro 'BOOST_CHECK_NO_THROW_IMPL' S; \ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1249:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1253:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1258:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1260:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1264:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1266:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1270:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1272:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1276:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1278:38: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /usr/include/boost/test/unit_test.hpp:19:0, from /usr/include/boost/test/auto_unit_test.hpp:18, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/test_boost.hpp:66, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1317:57: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:167) [-Wdeprecated-declarations] BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/simple/simple_om.hpp:35, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:169) [-Wdeprecated-declarations] options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Std_seg_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Std_seg.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq(ncbi::TGi)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:495:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set(const std::vector&)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:509:47: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs));/* NCBI_FAKE_WARNING */ ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function 'void QueryData::ObjMgr_QueryFactory_LocalData_GetSumOfSequenceLengths::test_method()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:580:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bs)); /* NCBI_FAKE_WARNING */ ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/search_strategy.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_types.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../api -I/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/../../core -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/api -I/build/buildd/ncbi-blast+-2.2.30/c++/algo/blast/core /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie test_objmgr.o blast_test_util.o blast_unit_test.o bl2seq_unit_test.o gencode_singleton_unit_test.o blastoptions_unit_test.o blastfilter_unit_test.o uniform_search_unit_test.o remote_blast_unit_test.o aascan_unit_test.o ntscan_unit_test.o version_reference_unit_test.o aalookup_unit_test.o subj_ranges_unit_test.o blastengine_unit_test.o linkhsp_unit_test.o blasthits_unit_test.o gapinfo_unit_test.o rps_unit_test.o hspstream_unit_test.o hspstream_test_util.o scoreblk_unit_test.o seqalign_cmp.o seqalign_set_convert.o split_query_unit_test.o phiblast_unit_test.o prelimsearch_unit_test.o psiblast_unit_test.o psibl2seq_unit_test.o traceback_unit_test.o tracebacksearch_unit_test.o msa2pssm_unit_test.o optionshandle_unit_test.o hspfilter_culling_unit_test.o hspfilter_besthit_unit_test.o psiblast_iteration_unit_test.o pssmcreate_unit_test.o blastdiag_unit_test.o blastextend_unit_test.o blastsetup_unit_test.o pssmenginefreqratios_unit_test.o querydata_unit_test.o queryinfo_unit_test.o redoalignment_unit_test.o search_strategy_unit_test.o setupfactory_unit_test.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o seqinfosrc_unit_test.o ntlookup_unit_test.o seqsrc_unit_test.o seqsrc_mock.o pssm_test_util.o pssmcreate_cdd_unit_test.o delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lxobjsimple -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lnsl -lz -lbz2 -ldl -lm -lpthread -o blast_unit_test strip blast_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blast_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithDB::test_method()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:79:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp: In member function 'void blast_archive::BuildArchiveWithBl2seq::test_method()': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:118:43: warning: 'CObjMgrFree_QueryFactory' is deprecated (declared at /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/objmgrfree_query_data.hpp:51) [-Wdeprecated-declarations] CRef query_factory(new CObjMgrFree_QueryFactory(bss_ref)); ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o blast_format_unit_test strip blast_format_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blast_format_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs -I../ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/annot_type_selector.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/data_loader.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lnsl -lz -lbz2 -ldl -lm -lpthread -o bdbloader_unit_test strip bdbloader_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f bdbloader_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function 'void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)': /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:78:18: warning: variable 'wholeL' set but not used [-Wunused-but-set-variable] int wholeL(0); ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -o seqdb_unit_test strip seqdb_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f seqdb_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd app/blast/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/Makefile.legacy_blast builddir=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast -w all make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/legacy_blast.pl /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/legacy_blast.pl /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/Makefile.update_blastdb builddir=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast -w all make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/update_blastdb.pl /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/update_blastdb.pl /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=blast_app_util -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blast_app_util.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blast_app_util.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libblast_app_util.a /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=blast_formatter -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/iterator.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blast_formatter.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blast_formatter strip blast_formatter /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blast_formatter /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=blastn -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blastn_app.cpp -o blastn_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blastn_app.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastn strip blastn /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blastn /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=blastp -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blastp_app.cpp -o blastp_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blastp_app.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastp strip blastp /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blastp /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=blastx -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blastx_app.cpp -o blastx_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/blastx_app.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastx strip blastx /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blastx /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=deltablast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/deltablast.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/deltablast_app.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o deltablast strip deltablast /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f deltablast /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=psiblast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blast/Blast4_value.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_options.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/psiblast_app.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o psiblast strip psiblast /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f psiblast /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=rpsblast -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/rpsblast_app.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o rpsblast strip rpsblast /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f rpsblast /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=rpstblastn -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/rpstblastn_app.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o rpstblastn strip rpstblastn /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f rpstblastn /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=seedtop -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/seedtop.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/seedtop_app.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o seedtop strip seedtop /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f seedtop /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=tblastn -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/tblastn_app.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o tblastn strip tblastn /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f tblastn /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast TMPL=tblastx -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/query_data.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/local_blast.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blast/tblastx_app.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast_app_util -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o tblastx strip tblastx /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f tblastx /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Align_def.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/build_db.cpp:41: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/seqloc__.hpp:1, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:40: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libwritedb.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libwritedb.so /bin/ln -f .writedb.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer' cd app/blastdb/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb TMPL=blastdb_aliastool -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/blastdb_aliastool.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastdb_aliastool strip blastdb_aliastool /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blastdb_aliastool /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb TMPL=blastdbcheck -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/blastdbcheck.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastdbcheck strip blastdbcheck /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blastdbcheck /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb TMPL=blastdbcmd -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/blastdbcmd.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastdbcmd strip blastdbcmd /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blastdbcmd /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb TMPL=blastdbcp -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/blastdbcp.cpp:33: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o blastdbcp strip blastdbcp /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blastdbcp /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb TMPL=convert2blastmask -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/convert2blastmask.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxblast -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxconnext -lxser -lsequtil -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o convert2blastmask strip convert2blastmask /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f convert2blastmask /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb TMPL=makeblastdb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/makeblastdb.cpp:42: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/masked_range_set.cpp:31: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o makeblastdb strip makeblastdb /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f makeblastdb /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb TMPL=makeprofiledb -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistrasn.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/blastdb/makeprofiledb.cpp:44: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblastinput -lxblastformat -lalign_format -lxblast -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lwritedb -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lblastxml -lblastxml2 -lgeneral -lseqcode -lblast -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -lxconnect -lxhtml -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -ldl -lnsl -lm -lpthread -o makeprofiledb strip makeprofiledb /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f makeprofiledb /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' cd app/dustmasker/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/dustmasker' cd app/dustmasker/ && /usr/bin/make -w APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/dustmasker TMPL=dustmasker -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/dustmasker/main.cpp -o main.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/dustmasker/main.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lncbi_xloader_genbank -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lncbi_xreader -lseqdb -lxalgodustmask -lxobjutil -lid2 -lxobjmgr -lxobjread -lid1 -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxconnext -lxser -lsequtil -lxconnect -lxutil -lcreaders -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o dustmasker strip dustmasker /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f dustmasker /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/dustmasker' cd algo/segmask/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/segmask' /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/segmask' cd algo/segmask/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/algo/segmask TMPL=xalgosegmask -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/segmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/segmask/segmask.cpp -o segmask.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/segmask/segmask.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/algo/segmask/segmask.cpp:36: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libxalgosegmask.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libxalgosegmask.so /bin/ln -f .xalgosegmask.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/segmask' cd app/segmasker/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/segmasker' cd app/segmasker/ && /usr/bin/make -w APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/segmasker TMPL=segmasker -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/segmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/segmasker/segmasker.cpp -o segmasker.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/segmasker/segmasker.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxblast -lxobjsimple -lncbi_xloader_genbank -lxalgowinmask -lblast_services -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalgoblastdbindex -lxalnmgr -lncbi_xreader -lseqdb -lxalgodustmask -lxalgosegmask -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxconnext -lxser -lsequtil -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o segmasker strip segmasker /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f segmasker /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker -w all make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' cd app/winmasker/ && /usr/bin/make -w APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker TMPL=winmasker -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Bioseq.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/readers/fasta.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_app.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/tempstr.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbistr.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:1848:34: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_DefaultRequestCtx; // Default request context ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2316:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Username; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2317:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_AppName; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2319:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] mutable auto_ptr m_DefaultSessionId; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2336:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_ErrLogRC; ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbidiag.hpp:2337:41: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_TraceLogRC; ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:45:0, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbistr.hpp:3741:22: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Encoded; ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:48, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbi_param.hpp:41:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_map.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:50, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/corelib/ncbiapp.hpp:577:32: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] auto_ptr m_Args; ///< Parsed cmd.-line args ^ In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_map.hpp:40:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqfeat/SeqFeatData.hpp:97, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/tse_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/bioseq_handle.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/seq_vector.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/algo/dustmask/symdust.hpp:50, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp: In member function 'void ncbi::NStaticArray::CPairConverter::Convert(void*, const void*) const': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp:402:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /build/buildd/ncbi-blast+-2.2.30/c++/include/util/static_set.hpp:405:14: warning: 'auto_ptr' is deprecated (declared at /usr/include/c++/4.9/backward/auto_ptr.h:87) [-Wdeprecated-declarations] (MakeConverter(static_cast(0), ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lncbi_xloader_genbank -lxalgowinmask -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lncbi_xreader -lseqdb -lxalgodustmask -lxobjutil -lid2 -lxobjmgr -lxobjread -lid1 -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lblast -lxcompress -lxconnext -lxser -lsequtil -lxconnect -lxutil -lcomposition_adjustment -lcreaders -ltables -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o windowmasker strip windowmasker /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f windowmasker /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/windowmasker make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' cd objmgr/split/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/split' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/split' cd objmgr/split/ && /usr/bin/make -w APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split TMPL=id2_split -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/blob_splitter.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/blob_splitter.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/split_blob.cpp -o split_blob.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/split_blob.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/split_blob.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/id_range.cpp -o id_range.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/id_range.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/id_range.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/Seq_annot.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/object_splitinfo.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/asn_sizer.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/id_range.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/annot_piece.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/annot_piece.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/place_id.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/chunk_info.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/chunk_info.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/size.cpp -o size.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/size.cpp:37: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -lm -lpthread /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib /bin/ln -f libid2_split.so /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib/libid2_split.so /bin/ln -f .id2_split.dep /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/split' cd objtools/align_format/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/align_format/unit_test/ && /usr/bin/make -w APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/util/sequence.hpp:39, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:39: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objostr.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objmgr/scope.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/stdtypes.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objectinfo.hpp:40, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/impl/objecttype.hpp:36, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objhook.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/objistr.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:38: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_genbank -lblast_services -lblastdb_format -lncbi_xloader_blastdb -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lseqmasks_io -lxalnmgr -lncbi_xreader -lseqdb -lxnetblastcli -lxobjutil -lid2 -lxnetblast -lxobjmgr -lxobjread -lid1 -lscoremat -lseqedit -lseqsplit -lsubmit -lblastdb -lgenome_collection -lseqset -ltaxon1 -lvariation -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcgi -lxcompress -lxconnext -lxser -lgene_info -lsequtil -ltest_boost -lxconnect -lxhtml -lxutil -lcreaders -ltables -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o align_format_unit_test strip align_format_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f align_format_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seq_writer_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread -o blastdb_format_unit_test strip blastdb_format_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blastdb_format_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f gene_info_reader /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/demo' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -lm -lpthread -o gene_info_unit_test strip gene_info_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f gene_info_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o seqdb_demo strip seqdb_demo /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f seqdb_demo /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f seqdb_perf /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:43: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lnsl -ldl -lm -lpthread -o writedb_unit_test strip writedb_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f writedb_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w sources make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services/unit_test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w all make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/inc -I/build/buildd/ncbi-blast+-2.2.30/c++/include -Wno-unused-local-typedefs /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o In file included from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bm.h:51:0, from /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/buildd/ncbi-blast+-2.2.30/c++/include/serial/serialbase.hpp:45, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/buildd/ncbi-blast+-2.2.30/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h: In instantiation of 'const char bm::first_bit_table::_idx [256]': /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmutil.h:147:56: required from here /build/buildd/ncbi-blast+-2.2.30/c++/include/util/bitset/bmconst.h:154:12: warning: narrowing conversion of '-1' from 'int' to 'const char' inside { } [-Wnarrowing] const char first_bit_table::_idx[256] = { ^ /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -L/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lnsl -lz -lbz2 -ldl -lm -lpthread -o blast_services_unit_test strip blast_services_unit_test /bin/bash /build/buildd/ncbi-blast+-2.2.30/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin /bin/ln -f blast_services_unit_test /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services/unit_test' make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build' make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build' make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30' debian/rules override_dh_auto_test make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.30' dh_auto_test /usr/bin/make -j1 check make[2]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++' if test -s ""; then \ cd /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build' ====================================================================== make[4]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/zlib' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/compress' /bin/echo 'Warning: non-existent sub-project "diff"' Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/tables' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect' /usr/bin/make -C services -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/services' /usr/bin/make -C ext -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/ext' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect/ext' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/cgi' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/html' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder/msbuild' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial/datatool' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/serial' /bin/echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/general' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id1' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml' /usr/bin/make -C blastxml2 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/blastxml2' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/ncbimime' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/taxon3' /usr/bin/make -C gbproj -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/gbproj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/gbproj' /usr/bin/make -C trackmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/trackmgr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/trackmgr' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/access' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genomecoll' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/macro' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/macro' /usr/bin/make -C genesbyloc -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genesbyloc' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/genesbyloc' /usr/bin/make -C coords -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/coords' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects/coords' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/util' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/readers' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -C pubseq -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' NOTE: Skipping project pubseq due to unmet requirements: PubSeqOS make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/pubseq TMPL=ncbi_xreader_pubseqos -w mark-as-disabled make[10]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' make[10]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq' /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -C pubseq2 -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' NOTE: Skipping project pubseq2 due to unmet requirements: PubSeqOS make[9]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' /usr/bin/make -f /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/data_loaders/genbank/pubseq2 TMPL=ncbi_xreader_pubseqos2 -w mark-as-disabled make[10]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' make[10]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' make[9]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/pubseq2' /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds"' Warning: non-existent sub-project "lds" /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" /bin/echo 'Warning: non-existent sub-project "trace"' Warning: non-existent sub-project "trace" /bin/echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/cleanup' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/format' /usr/bin/make -C edit -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" /bin/echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/align_format' /bin/echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" /bin/echo 'Warning: non-existent sub-project "uudutil"' Warning: non-existent sub-project "uudutil" /bin/echo 'Warning: non-existent sub-project "variation"' Warning: non-existent sub-project "variation" /bin/echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput/unit_test' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test make[8]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /bin/echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" /bin/echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" /bin/echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" /bin/echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" /bin/echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" /bin/echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" /bin/echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" /bin/echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" /bin/echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" /bin/echo 'Warning: non-existent sub-project "primer"' Warning: non-existent sub-project "primer" /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/algo' /bin/echo 'Warning: non-existent sub-project "misc"' Warning: non-existent sub-project "misc" /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" /bin/echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" /bin/echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" /bin/echo 'Warning: non-existent sub-project "asn_cleanup"' Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blast' /bin/echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" /bin/echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" /bin/echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" /bin/echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" /bin/echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" /bin/echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app/blastdb' /bin/echo 'Warning: non-existent sub-project "vecscreen"' Warning: non-existent sub-project "vecscreen" /bin/echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" /bin/echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" /bin/echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" /bin/echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" /bin/echo 'Warning: non-existent sub-project "lds_indexer"' Warning: non-existent sub-project "lds_indexer" /bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" /bin/echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" /bin/echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" /bin/echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" /bin/echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" /bin/echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" /bin/echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" /bin/echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" /bin/echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" /bin/echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" /bin/echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" /bin/echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" /bin/echo 'Warning: non-existent sub-project "lds2_indexer"' Warning: non-existent sub-project "lds2_indexer" /bin/echo 'Warning: non-existent sub-project "discrep_report"' Warning: non-existent sub-project "discrep_report" /bin/echo 'Warning: non-existent sub-project "biosample_chk"' Warning: non-existent sub-project "biosample_chk" /bin/echo 'Warning: non-existent sub-project "gap_stats"' Warning: non-existent sub-project "gap_stats" /bin/echo 'Warning: non-existent sub-project "table2asn"' Warning: non-existent sub-project "table2asn" /bin/echo 'Warning: non-existent sub-project "srcchk"' Warning: non-existent sub-project "srcchk" /bin/echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" /bin/echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" /bin/echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" /bin/echo 'Warning: non-existent sub-project "rmblastn"' Warning: non-existent sub-project "rmblastn" make[5]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" /bin/echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... Done. OK -- [serial/datatool] datatool.sh (real 0.39, user 0.24, sys 0.16) SKP -- [serial/datatool] datatool_xml.sh ERR [201] -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.00, sys 0.02) Succeeded : 1 Timeout : 0 Failed : 1 Absent : 1 /build/buildd/ncbi-blast+-2.2.30/c++/src/build-system/Makefile.meta_r:46: recipe for target 'check_r.real' failed make[3]: *** [check_r.real] Error 7 make[3]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build' Makefile:32: recipe for target 'check' failed make[2]: *** [check] Error 2 make[2]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30/c++' dh_auto_test: /usr/bin/make -j1 check returned exit code 2 debian/rules:51: recipe for target 'override_dh_auto_test' failed make[1]: [override_dh_auto_test] Error 2 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err ERR [201] -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.00, sys 0.02) ====================================================================== gene_info_unit_test ====================================================================== 12769/000/0000/PB 9B4831E155A802F1 0001/0001 2015-05-19T00:13:35.293542 denneed01 UNK_CLIENT UNK_SESSION gene_info_unit_test start /build/buildd/ncbi-blast+-2.2.30/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test/gene_info_unit_test Running 4 test cases... /build/buildd/ncbi-blast+-2.2.30/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp(340): fatal error in "s_MainInfoReaderTest": critical check fileReader1->GetGeneInfoForGi(gi, infoList1) failed Executed 4 test cases. *** 1 failure detected in test suite "Master Test Suite" 12769/000/0000/PE 9B4831E155A802F1 0002/0002 2015-05-19T00:13:35.299380 denneed01 UNK_CLIENT UNK_SESSION gene_info_unit_test stop 201 0.008255004 Command exited with non-zero status 201 real 0.02 user 0.00 sys 0.02 Start time : 05/19/2015 00:13:35 Stop time : 05/19/2015 00:13:35 Load averages: 0.91 0.93 0.92 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 201 make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch -Dc++ --with autotools_dev --with quilt dh_testroot -a -O-Dc\+\+ dh_prep -a -O-Dc\+\+ dh_installdirs -a -O-Dc\+\+ debian/rules override_dh_auto_install make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.30' cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30' debian/rules override_dh_install make[1]: Entering directory '/build/buildd/ncbi-blast+-2.2.30' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool \ debian/ncbi-blast+/usr/bin/project_tree_builder \ debian/ncbi-blast+/usr/lib/ncbi-blast+/libtest_*.so if test -d debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin; then cp debian/legacy/legacy.sh debian/ncbi-blast+-legacy/usr/share/ncbi-blast+/bin/; fi make[1]: Leaving directory '/build/buildd/ncbi-blast+-2.2.30' dh_installdocs -a -O-Dc\+\+ dh_installchangelogs -a -O-Dc\+\+ dh_installexamples -a -O-Dc\+\+ dh_installman -a -O-Dc\+\+ dh_installcatalogs -a -O-Dc\+\+ dh_installcron -a -O-Dc\+\+ dh_installdebconf -a -O-Dc\+\+ dh_installemacsen -a -O-Dc\+\+ dh_installifupdown -a -O-Dc\+\+ dh_installinfo -a -O-Dc\+\+ dh_installinit -a -O-Dc\+\+ dh_installmenu -a -O-Dc\+\+ dh_installmime -a -O-Dc\+\+ dh_installmodules -a -O-Dc\+\+ dh_installlogcheck -a -O-Dc\+\+ dh_installlogrotate -a -O-Dc\+\+ dh_installpam -a -O-Dc\+\+ dh_installppp -a -O-Dc\+\+ dh_installudev -a -O-Dc\+\+ dh_installgsettings -a -O-Dc\+\+ dh_bugfiles -a -O-Dc\+\+ dh_ucf -a -O-Dc\+\+ dh_lintian -a -O-Dc\+\+ dh_gconf -a -O-Dc\+\+ dh_icons -a -O-Dc\+\+ dh_perl -a -O-Dc\+\+ dh_usrlocal -a -O-Dc\+\+ dh_link -a -O-Dc\+\+ dh_installwm -a -O-Dc\+\+ dh_installxfonts -a -O-Dc\+\+ dh_compress -a -O-Dc\+\+ dh_fixperms -a -O-Dc\+\+ dh_strip -a -O-Dc\+\+ dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: ncbi-blast+ dh_strip debug symbol extraction: packages to act on: ncbi-blast+ dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 ncbi-blast+ has no unstripped objects, ignoring find: `/build/buildd/ncbi-blast+-2.2.30/debian/ncbi-blast+-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/buildd/ncbi-blast+-2.2.30/debian/ncbi-blast+-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a -O-Dc\+\+ dh_shlibdeps -a -O-Dc\+\+ dh_installdeb -a -O-Dc\+\+ dh_gencontrol -a -O-Dc\+\+ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform powerpc: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: ncbi-blast+ dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: no debian/ncbi-blast+-dbgsym, skipping package ncbi-blast+ dh_md5sums -a -O-Dc\+\+ dh_builddeb -a -O-Dc\+\+ INFO: pkgstriptranslations version 121 pkgstriptranslations: processing ncbi-blast+ (in debian/ncbi-blast+); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+/DEBIAN/control, package ncbi-blast+, directory debian/ncbi-blast+ pkgstripfiles: Truncating usr/share/doc/ncbi-blast+/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package ncbi-blast+ took 0 s dpkg-deb: building package `ncbi-blast+' in `../ncbi-blast+_2.2.30-3_powerpc.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../ncbi-blast+_2.2.30-3_powerpc.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build ncbi-blast+-2.2.30 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20150518-2014 chroot-autobuild/build/buildd/ncbi-blast+_2.2.30-3_powerpc.deb: new debian package, version 2.0. size 7549116 bytes: control archive=3855 bytes. 1287 bytes, 25 lines control 6329 bytes, 96 lines md5sums Package: ncbi-blast+ Version: 2.2.30-3 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 39531 Depends: ncbi-data, python, perl, libbz2-1.0, libc6 (>= 2.15), libgcc1 (>= 1:4.2.1), libgomp1 (>= 4.9), libpcre3, libstdc++6 (>= 4.9), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. chroot-autobuild/build/buildd/ncbi-blast+_2.2.30-3_powerpc.deb: drwxr-xr-x root/root 0 2015-05-18 20:13 ./ drwxr-xr-x root/root 0 2015-05-18 20:13 ./usr/ drwxr-xr-x root/root 0 2015-05-18 20:13 ./usr/bin/ -rwxr-xr-x root/root 198352 2015-05-18 20:13 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 67168 2015-05-18 20:13 ./usr/bin/dustmasker -rwxr-xr-x root/root 263888 2015-05-18 20:13 ./usr/bin/tblastn -rwxr-xr-x root/root 67168 2015-05-18 20:13 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 67176 2015-05-18 20:13 ./usr/bin/segmasker -rwxr-xr-x root/root 198352 2015-05-18 20:13 ./usr/bin/deltablast -rwxr-xr-x root/root 51346 2015-05-18 20:13 ./usr/bin/legacy_blast -rwxr-xr-x root/root 198340 2015-05-18 20:13 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 132860 2015-05-18 20:13 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 67220 2015-05-18 20:13 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 198352 2015-05-18 20:13 ./usr/bin/rpstblastn -rwxr-xr-x root/root 198336 2015-05-18 20:13 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 263888 2015-05-18 20:13 ./usr/bin/tblastx -rwxr-xr-x root/root 263888 2015-05-18 20:13 ./usr/bin/blastx -rwxr-xr-x root/root 67168 2015-05-18 20:13 ./usr/bin/windowmasker -rwxr-xr-x root/root 67168 2015-05-18 20:13 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 67168 2015-05-18 20:13 ./usr/bin/makembindex -rwxr-xr-x root/root 132820 2015-05-18 20:13 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 263888 2015-05-18 20:13 ./usr/bin/makeblastdb -rwxr-xr-x root/root 198352 2015-05-18 20:13 ./usr/bin/seedtop+ -rwxr-xr-x root/root 263888 2015-05-18 20:13 ./usr/bin/psiblast -rwxr-xr-x root/root 263900 2015-05-18 20:13 ./usr/bin/blast_formatter -rwxr-xr-x root/root 198352 2015-05-18 20:13 ./usr/bin/blastn -rwxr-xr-x root/root 263888 2015-05-18 20:13 ./usr/bin/blastp -rwxr-xr-x root/root 5950 2015-05-18 20:13 ./usr/bin/windowmasker_2.2.22_adapter -rwxr-xr-x root/root 67192 2015-05-18 20:13 ./usr/bin/blastdbcp -rwxr-xr-x root/root 12486 2015-05-18 20:13 ./usr/bin/update_blastdb drwxr-xr-x root/root 0 2015-05-18 20:13 ./usr/lib/ drwxr-xr-x root/root 0 2015-05-18 20:13 ./usr/lib/ncbi-blast+/ -rw-r--r-- root/root 67116 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libseqmasks_io.so -rw-r--r-- root/root 788180 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libxalnmgr.so -rw-r--r-- root/root 460332 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libxblastformat.so -rw-r--r-- root/root 614808 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libblast.so -rw-r--r-- root/root 132612 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so -rw-r--r-- root/root 132512 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libmedline.so -rw-r--r-- root/root 66984 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libxalgodustmask.so -rw-r--r-- root/root 198112 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libblastxml2.so -rw-r--r-- root/root 132512 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libsequtil.so -rw-r--r-- root/root 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./usr/lib/ncbi-blast+/libvariation.so -rw-r--r-- root/root 2628312 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libxncbi.so -rw-r--r-- root/root 657064 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libblastinput.so -rw-r--r-- root/root 132584 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libpub.so -rw-r--r-- root/root 854400 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libncbi_xreader.so -rw-r--r-- root/root 132588 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libblastdb_format.so -rw-r--r-- root/root 1641356 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libxser.so -rw-r--r-- root/root 198120 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libid1.so -rw-r--r-- root/root 67024 2015-05-18 20:13 ./usr/lib/ncbi-blast+/libxregexp.so drwxr-xr-x root/root 0 2015-05-18 20:13 ./usr/share/ drwxr-xr-x root/root 0 2015-05-18 20:13 ./usr/share/man/ drwxr-xr-x root/root 0 2015-05-18 20:13 ./usr/share/man/man1/ -rw-r--r-- root/root 760 2015-05-18 20:13 ./usr/share/man/man1/ncbi-blast+.1.gz drwxr-xr-x root/root 0 2015-05-18 20:13 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-05-18 20:13 ./usr/share/doc/ncbi-blast+/ -rw-r--r-- root/root 957 2015-05-18 20:14 ./usr/share/doc/ncbi-blast+/changelog.Debian.gz -rw-r--r-- root/root 11447 2014-11-21 12:20 ./usr/share/doc/ncbi-blast+/copyright -rw-r--r-- root/root 504 2014-11-21 12:20 ./usr/share/doc/ncbi-blast+/README.Debian ncbi-blast+_2.2.30-3_powerpc.changes: Format: 1.8 Date: Mon, 18 May 2015 14:34:50 +0200 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy Architecture: powerpc Version: 2.2.30-3 Distribution: wily-proposed Urgency: medium Maintainer: Ubuntu Build Daemon Changed-By: Olivier Sallou Description: ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.2.30-3) unstable; urgency=medium . * Switch to unstable after unfreeze. Checksums-Sha1: 857dcfcb1dcbc18be9b0650ba0aede104fa7cd7b 7549116 ncbi-blast+_2.2.30-3_powerpc.deb Checksums-Sha256: fe0bddcfa5ba3620156733c9ca059dd2c5a7190892b1a236eaaf09e225f1bcc5 7549116 ncbi-blast+_2.2.30-3_powerpc.deb Files: 27a3cfb6a4701223f07753cb10dc1a3a 7549116 science optional ncbi-blast+_2.2.30-3_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20150518-2014 Build needed 00:53:56, 319476k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-7442402'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-7442402/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-7442402'] Unmounting chroot for build PACKAGEBUILD-7442402... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-7442402'] Removing build PACKAGEBUILD-7442402